Rytas Vilgalys, Ph.D. - Publications

Biology Duke University, Durham, NC 
Fungal evolution and phylogenetics

164 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, et al. Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. The New Phytologist. PMID 33355923 DOI: 10.1111/nph.17160  0.4
2020 Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, ... ... Vilgalys R, et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications. 11: 5125. PMID 33046698 DOI: 10.1038/s41467-020-18795-w  0.56
2020 Steidinger BS, Bhatnagar JM, Vilgalys R, Taylor JW, Qin C, Zhu K, Bruns TD, Peay KG. Ectomycorrhizal fungal diversity predicted to substantially decline due to climate changes in North American Pinaceae forests Journal of Biogeography. 47: 772-782. DOI: 10.1111/jbi.13802  0.52
2019 Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/fmicb.2019.02163  0.76
2018 Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R. Phylogenetic taxon definitions for and . Ima Fungus. 9: 291-298. PMID 30622884 DOI: 10.5598/imafungus.2018.09.02.05  0.92
2018 Misztal PK, Lymperopoulou DS, Adams R, Scott R, Lindow S, Bruns T, Taylor JW, Uehling J, Bonito G, Vilgalys R, Goldstein AH. Emission Factors of Microbial Volatile Organic Compounds from Environmental Bacteria and Fungi. Environmental Science & Technology. PMID 29947506 DOI: 10.1021/acs.est.8b00806  0.52
2018 Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, ... ... Vilgalys R, et al. Phylogenetic and Phylogenomic Definition of Species. G3 (Bethesda, Md.). PMID 29674435 DOI: 10.1534/g3.118.200235  0.76
2017 Smith ME, Henkel TW, Williams GC, Aime MC, Fremier AK, Vilgalys R. Investigating niche partitioning of ectomycorrhizal fungi in specialized rooting zones of the monodominant leguminous tree Dicymbe corymbosa. The New Phytologist. PMID 28493414 DOI: 10.1111/nph.14570  0.8
2017 Gryganskyi AP, Mullens BA, Gajdeczka MT, Rehner SA, Vilgalys R, Hajek AE. Hijacked: Co-option of host behavior by entomophthoralean fungi. Plos Pathogens. 13: e1006274. PMID 28472199 DOI: 10.1371/journal.ppat.1006274  0.4
2017 Rosenthal LM, Larsson KH, Branco S, Chung JA, Glassman SI, Liao HL, Peay KG, Smith DP, Talbot JM, Taylor JW, Vellinga EC, Vilgalys R, Bruns TD. Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal. Mycologia. 109: 115-127. PMID 28402791 DOI: 10.1080/00275514.2017.1281677  0.52
2017 Bonito G, Hameed K, Toome-Heller M, Healy R, Reid C, Liao HL, Aime MC, Schadt C, Vilgalys R. Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome. Mycologia. 109: 18-26. PMID 28402786 DOI: 10.1080/00275514.2016.1271689  0.8
2016 Li Z, Yao Q, Dearth SP, Entler MR, Castro Gonzalez HF, Uehling JK, Vilgalys RJ, Hurst GB, Campagna SR, Labbé JL, Pan C. Integrated Proteomics and Metabolomics Suggests Symbiotic Metabolism and Multimodal Regulation in a Fungal-Endobacterial System. Environmental Microbiology. PMID 27871150 DOI: 10.1111/1462-2920.13605  0.76
2016 Branco S, Bi K, Liao HL, Gladieux P, Badouin H, Ellison CE, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology. PMID 27761941 DOI: 10.1111/mec.13892  0.52
2016 Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, ... Vilgalys R, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042  0.92
2016 Ekblad A, Mikusinska A, Ågren GI, Menichetti L, Wallander H, Vilgalys R, Bahr A, Eriksson U. Production and turnover of ectomycorrhizal extramatrical mycelial biomass and necromass under elevated CO2 and nitrogen fertilization. The New Phytologist. PMID 27118132 DOI: 10.1111/nph.13961  1
2016 Johansen RB, Johnston P, Mieczkowski P, Perry GLW, Robeson MS, Burns BR, Vilgalys R. A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities Fungal Ecology. 23: 141-155. DOI: 10.1016/j.funeco.2016.08.003  1
2016 Czaplicki LM, Cooper E, Ferguson PL, Stapleton HM, Vilgalys R, Gunsch CK. A New Perspective on Sustainable Soil Remediation-Case Study Suggests Novel Fungal Genera Could Facilitate in situ Biodegradation of Hazardous Contaminants Remediation. 26: 59-72. DOI: 10.1002/rem.21458  1
2015 Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Genetic isolation between two recently diverged populations of a symbiotic fungus. Molecular Ecology. 24: 2747-58. PMID 25728665 DOI: 10.1111/mec.13132  1
2015 Glassman SI, Peay KG, Talbot JM, Smith DP, Chung JA, Taylor JW, Vilgalys R, Bruns TD. A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern. The New Phytologist. 205: 1619-31. PMID 25557275 DOI: 10.1111/nph.13240  1
2015 Kuske CR, Hesse CN, Challacombe JF, Cullen D, Herr JR, Mueller RC, Tsang A, Vilgalys R. Prospects and challenges for fungal metatranscriptomics of complex communities Fungal Ecology. 14: 133-137. DOI: 10.1016/j.funeco.2014.12.005  1
2014 Liao HL, Chen Y, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Vilgalys R. Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ. Environmental Microbiology. 16: 3730-42. PMID 25186788 DOI: 10.1111/1462-2920.12619  1
2014 Bonito G, Reynolds H, Robeson MS, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology. 23: 3356-70. PMID 24894495 DOI: 10.1111/mec.12821  1
2014 Talbot JM, Bruns TD, Taylor JW, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Liao HL, Smith ME, Peay KG. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6341-6. PMID 24733885 DOI: 10.1073/pnas.1402584111  1
2014 Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA. Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3. Fems Microbiology Letters. 352: 165-73. PMID 24461055 DOI: 10.1111/1574-6968.12387  1
2014 Hofstetter V, Redhead SA, Kauff F, Moncalvo JM, Matheny PB, Vilgalys R. Taxonomic revision and examination of ecological transitions of the Lyophyllaceae (Basidiomycota, Agaricales) based on a multigene phylogeny Cryptogamie, Mycologie. 35: 399-425. DOI: 10.7872/crym.v35.iss4.2014.399  1
2014 Lodge DJ, Padamsee M, Matheny PB, Aime MC, Cantrell SA, Boertmann D, Kovalenko A, Vizzini A, Dentinger BTM, Kirk PM, Ainsworth AM, Moncalvo JM, Vilgalys R, Larsson E, Lücking R, et al. Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales) Fungal Diversity. 64: 1-99. DOI: 10.1007/s13225-013-0259-0  1
2013 Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW. A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. Plos One. 8: e76382. PMID 24146861 DOI: 10.1371/journal.pone.0076382  1
2013 Benítez MS, Hersh MH, Vilgalys R, Clark JS. Pathogen regulation of plant diversity via effective specialization. Trends in Ecology & Evolution. 28: 705-11. PMID 24091206 DOI: 10.1016/j.tree.2013.09.005  1
2013 Gryganskyi AP, Humber RA, Smith ME, Hodge K, Huang B, Voigt K, Vilgalys R. Phylogenetic lineages in Entomophthoromycota. Persoonia. 30: 94-105. PMID 24027349 DOI: 10.3767/003158513X666330  1
2013 Gryganskyi AP, Humber RA, Stajich JE, Mullens B, Anishchenko IM, Vilgalys R. Sequential utilization of hosts from different fly families by genetically distinct, sympatric populations within the Entomophthora muscae species complex. Plos One. 8: e71168. PMID 23951101 DOI: 10.1371/journal.pone.0071168  1
2013 Weber CF, Vilgalys R, Kuske CR. Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon. Frontiers in Microbiology. 4: 78. PMID 23641237 DOI: 10.3389/fmicb.2013.00078  1
2013 Smith ME, Henkel TW, Uehling JK, Fremier AK, Clarke HD, Vilgalys R. The ectomycorrhizal fungal community in a neotropical forest dominated by the endemic dipterocarp Pakaraimaea dipterocarpacea. Plos One. 8: e55160. PMID 23383090 DOI: 10.1371/journal.pone.0055160  1
2013 Bonito G, Smith ME, Nowak M, Healy RA, Guevara G, Cázares E, Kinoshita A, Nouhra ER, Domínguez LS, Tedersoo L, Murat C, Wang Y, Moreno BA, Pfister DH, Nara K, ... ... Vilgalys R, et al. Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified southern hemisphere sister lineage. Plos One. 8: e52765. PMID 23300990 DOI: 10.1371/journal.pone.0052765  1
2013 Healy RA, Smith ME, Bonito GM, Pfister DH, Ge ZW, Guevara GG, Williams G, Stafford K, Kumar L, Lee T, Hobart C, Trappe J, Vilgalys R, McLaughlin DJ. High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales. Molecular Ecology. 22: 1717-32. PMID 23205556 DOI: 10.1111/mec.12135  1
2013 Husbands DR, Henkel TW, Bonito G, Vilgalys R, Smith ME. New species of Xerocomus (Boletales) from the Guiana Shield, with notes on their mycorrhizal status and fruiting occurrence. Mycologia. 105: 422-35. PMID 23080024 DOI: 10.3852/12-146  1
2013 Guevara G, Bonito G, Trappe JM, Cázares E, Williams G, Healy RA, Schadt C, Vilgalys R. New North American truffles (Tuber spp.) and their ectomycorrhizal associations. Mycologia. 105: 194-209. PMID 22962353 DOI: 10.3852/12-087  1
2013 Golonka AM, Vilgalys R. Nectar inhabiting yeasts in Virginian populations of Silene latifolia (Caryophyllaceae) and coflowering species American Midland Naturalist. 169: 235-258. DOI: 10.1674/0003-0031-169.2.235  1
2013 Gryganskyi AP, Humber RA, Smith ME, Miadlikovska J, Wu S, Voigt K, Walther G, Anishchenko IM, Vilgalys R. Corrigendum to "Molecular phylogeny of the Entomophthoromycota" [Mol. Phylogenet. Evol. 65 (2012) 682-694] Molecular Phylogenetics and Evolution. 66: 1099. DOI: 10.1016/j.ympev.2012.11.001  1
2013 Talbot JM, Bruns TD, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Peay KG. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition Soil Biology and Biochemistry. 57: 282-291. DOI: 10.1016/j.soilbio.2012.10.004  1
2012 Uehling JK, Henkel TW, Aime MC, Vilgalys R, Smith ME. New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa. Fungal Biology. 116: 1263-74. PMID 23245619 DOI: 10.1016/j.funbio.2012.09.004  1
2012 Gryganskyi AP, Humber RA, Smith ME, Miadlikowska J, Miadlikovska J, Wu S, Voigt K, Walther G, Anishchenko IM, Vilgalys R. Molecular phylogeny of the Entomophthoromycota. Molecular Phylogenetics and Evolution. 65: 682-94. PMID 22877646 DOI: 10.1016/j.ympev.2012.07.026  1
2012 Uehling JK, Henkel TW, Vilgalys R, Smith ME. Membranomyces species are common ectomycorrhizal symbionts in Northern Hemisphere forests. Mycorrhiza. 22: 577-81. PMID 22847636 DOI: 10.1007/s00572-012-0457-8  1
2012 Hersh MH, Vilgalys R, Clark JS. Evaluating the impacts of multiple generalist fungal pathogens on temperate tree seedling survival. Ecology. 93: 511-20. PMID 22624206 DOI: 10.1890/11-0598.1  1
2012 Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Hengartner NW, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR. Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide. Environmental Microbiology. 14: 1145-58. PMID 22264231 DOI: 10.1111/j.1462-2920.2011.02695.x  1
2012 Uehling JK, Henkel TW, Aime MC, Vilgalys R, Smith ME. New species of Clavulina (Cantharellales, Basidiomycota) with resupinate and effused basidiomata from the Guiana Shield. Mycologia. 104: 547-56. PMID 22067306 DOI: 10.3852/11-130  1
2012 Thaler AD, Van Dover CL, Vilgalys R. Ascomycete phylotypes recovered from a Gulf of Mexico methane seep are identical to an uncultured deep-sea fungal clade from the Pacific Fungal Ecology. 5: 270-273. DOI: 10.1016/j.funeco.2011.07.002  1
2012 Bonito G, Smith ME, Brenneman T, Vilgalys R. Assessing ectomycorrhizal fungal spore banks of truffle producing soils with pecan seedling trap-plants Plant and Soil. 356: 357-366. DOI: 10.1007/s11104-012-1127-5  1
2012 Henkel TW, Aime MC, Chin MML, Miller SL, Vilgalys R, Smith ME. Ectomycorrhizal fungal sporocarp diversity and discovery of new taxa in Dicymbe monodominant forests of the Guiana Shield Biodiversity and Conservation. 21: 2195-2220. DOI: 10.1007/s10531-011-0166-1  1
2011 Weber CF, Zak DR, Hungate BA, Jackson RB, Vilgalys R, Evans RD, Schadt CW, Megonigal JP, Kuske CR. Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems. Environmental Microbiology. 13: 2778-93. PMID 21883796 DOI: 10.1111/j.1462-2920.2011.02548.x  1
2011 Smith ME, Henkel TW, Catherine Aime M, Fremier AK, Vilgalys R. Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest. The New Phytologist. 192: 699-712. PMID 21883231 DOI: 10.1111/j.1469-8137.2011.03844.x  1
2011 Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/AEM.05255-11  1
2011 Porter TM, Martin W, James TY, Longcore JE, Gleason FH, Adler PH, Letcher PM, Vilgalys R. Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA. Fungal Biology. 115: 381-92. PMID 21530920 DOI: 10.1016/j.funbio.2011.02.004  1
2011 Bonito G, Brenneman T, Vilgalys R. Ectomycorrhizal fungal diversity in orchards of cultivated pecan (Carya illinoinensis; Juglandaceae). Mycorrhiza. 21: 601-12. PMID 21369784 DOI: 10.1007/s00572-011-0368-0  1
2011 Baroni TJ, Hofstetter V, Largent DL, Vilgalys R. Entocybe is proposed as a new genus in the Entolomataceae (Agaricomycetes, Basidiomycota) based on morphological and molecular evidence North American Fungi. 6: 1-19. DOI: 10.2509/naf2011.006.012  1
2011 Bonito G, Trappe JM, Donovan S, Vilgalys R. The Asian black truffle Tuber indicum can form ectomycorrhizas with North American host plants and complete its life cycle in non-native soils Fungal Ecology. 4: 83-93. DOI: 10.1016/j.funeco.2010.08.003  1
2010 Gryganskyi AP, Lee SC, Litvintseva AP, Smith ME, Bonito G, Porter TM, Anishchenko IM, Heitman J, Vilgalys R. Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex. Plos One. 5: e15273. PMID 21151560 DOI: 10.1371/journal.pone.0015273  1
2010 Bonito GM, Gryganskyi AP, Trappe JM, Vilgalys R. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology. 19: 4994-5008. PMID 21040049 DOI: 10.1111/j.1365-294X.2010.04855.x  1
2010 Bonito G, Trappe JM, Rawlinson P, Vilgalys R. Improved resolution of major clades within Tuber and taxonomy of species within the Tuber gibbosum complex. Mycologia. 102: 1042-57. PMID 20943504 DOI: 10.3852/09-213  1
2010 Bonito G, Isikhuemhen OS, Vilgalys R. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresource Technology. 101: 1021-7. PMID 19766485 DOI: 10.1016/j.biortech.2009.08.109  1
2009 McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R. The search for the fungal tree of life. Trends in Microbiology. 17: 488-97. PMID 19782570 DOI: 10.1016/j.tim.2009.08.001  1
2009 James TY, Litvintseva AP, Vilgalys R, Morgan JA, Taylor JW, Fisher MC, Berger L, Weldon C, du Preez L, Longcore JE. Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations. Plos Pathogens. 5: e1000458. PMID 19478871 DOI: 10.1371/journal.ppat.1000458  1
2009 Parrent JL, Vilgalys R. Expression of genes involved in symbiotic carbon and nitrogen transport in Pinus taeda mycorrhizal roots exposed to CO2 enrichment and nitrogen fertilization. Mycorrhiza. 19: 469-79. PMID 19415342 DOI: 10.1007/s00572-009-0250-5  1
2009 Findley K, Rodriguez-Carres M, Metin B, Kroiss J, Fonseca A, Vilgalys R, Heitman J. Phylogeny and phenotypic characterization of pathogenic Cryptococcus species and closely related saprobic taxa in the Tremellales. Eukaryotic Cell. 8: 353-61. PMID 19151324 DOI: 10.1128/EC.00373-08  1
2008 Hartman WH, Richardson CJ, Vilgalys R, Bruland GL. Environmental and anthropogenic controls over bacterial communities in wetland soils. Proceedings of the National Academy of Sciences of the United States of America. 105: 17842-7. PMID 19004771 DOI: 10.1073/pnas.0808254105  1
2008 Porter TM, Schadt CW, Rizvi L, Martin AP, Schmidt SK, Scott-Denton L, Vilgalys R, Moncalvo JM. Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution. 46: 635-44. PMID 18032071 DOI: 10.1016/j.ympev.2007.10.002  1
2007 Henk DA, Vilgalys R. Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium. American Journal of Botany. 94: 1515-26. PMID 21636518 DOI: 10.3732/ajb.94.9.1515  1
2007 Ceresini PC, Shew HD, James TY, Vilgalys RJ, Cubeta MA. Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. Bmc Evolutionary Biology. 7: 163. PMID 17854492 DOI: 10.1186/1471-2148-7-163  1
2007 Parrent JL, Vilgalys R. Biomass and compositional responses of ectomycorrhizal fungal hyphae to elevated CO2 and nitrogen fertilization. The New Phytologist. 176: 164-74. PMID 17803647 DOI: 10.1111/j.1469-8137.2007.02155.x  1
2007 Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R. Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia. 99: 185-206. PMID 17682771 DOI: 10.3852/mycologia.99.2.185  1
2007 Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, ... ... Vilgalys R, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/j.mycres.2007.03.004  1
2006 Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, ... ... Vilgalys R, et al. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia. 98: 982-95. PMID 17486974 DOI: 10.1080/15572536.2006.11832627  1
2006 Moncalvo JM, Nilsson RH, Koster B, Dunham SM, Bernauer T, Matheny PB, Porter TM, Margaritescu S, Weiss M, Garnica S, Danell E, Langer G, Langer E, Larsson E, Larsson KH, ... Vilgalys R, et al. The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia. 98: 937-48. PMID 17486970 DOI: 10.1080/15572536.2006.11832623  1
2006 James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia. 98: 860-71. PMID 17486963 DOI: 10.1080/15572536.2006.11832616  1
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... ... Vilgalys R, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/nature05110  1
2006 Parrent JL, Morris WF, Vilgalys R. CO2-enrichment and nutrient availability alter ectomycorrhizal fungal communities. Ecology. 87: 2278-87. PMID 16995628 DOI: 10.1890/0012-9658(2006)87[2278:CANAAE]2.0.CO;2  1
2006 Yahr R, Vilgalys R, DePriest PT. Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis. The New Phytologist. 171: 847-60. PMID 16918555 DOI: 10.1111/j.1469-8137.2006.01792.x  1
2006 González D, Cubeta MA, Vilgalys R. Phylogenetic utility of indels within ribosomal DNA and beta-tubulin sequences from fungi in the Rhizoctonia solani species complex. Molecular Phylogenetics and Evolution. 40: 459-70. PMID 16647865 DOI: 10.1016/j.ympev.2006.03.022  1
2006 James TY, Srivilai P, Kües U, Vilgalys R. Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function. Genetics. 172: 1877-91. PMID 16461425 DOI: 10.1534/genetics.105.051128  1
2006 Litvintseva AP, Thakur R, Vilgalys R, Mitchell TG. Multilocus sequence typing reveals three genetic subpopulations of Cryptococcus neoformans var. grubii (serotype A), including a unique population in Botswana. Genetics. 172: 2223-38. PMID 16322524 DOI: 10.1534/genetics.105.046672  1
2005 Aime MC, Vilgalys R, Miller OK. The Crepidotaceae (Basidiomycota, Agaricales): phylogeny and taxonomy of the genera and revision of the family based on molecular evidence. American Journal of Botany. 92: 74-82. PMID 21652386 DOI: 10.3732/ajb.92.1.74  1
2005 O'Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology. 71: 5544-50. PMID 16151147 DOI: 10.1128/AEM.71.9.5544-5550.2005  1
2005 Didukh M, Vilgalys R, Wasser SP, Isikhuemhen OS, Nevo E. Notes on Agaricus section Duploannulati using molecular and morphological data. Mycological Research. 109: 729-40. PMID 16080396 DOI: 10.1017/S0953756205002443  1
2005 Fierer N, Jackson JA, Vilgalys R, Jackson RB. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Applied and Environmental Microbiology. 71: 4117-20. PMID 16000830 DOI: 10.1128/AEM.71.7.4117-4120.2005  1
2005 Litvintseva AP, Kestenbaum L, Vilgalys R, Mitchell TG. Comparative analysis of environmental and clinical populations of Cryptococcus neoformans. Journal of Clinical Microbiology. 43: 556-64. PMID 15695645 DOI: 10.1128/JCM.43.2.556-564.2005  1
2005 Wallenstein MD, Vilgalys RJ. Quantitative analyses of nitrogen cycling genes in soils Pedobiologia. 49: 665-672. DOI: 10.1016/j.pedobi.2005.05.005  1
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, ... ... Vilgalys R, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/ajb.91.10.1446  1
2004 Peintner U, Moncalvo JM, Vilgalys R. Toward a better understanding of the infrageneric relationships in Cortinarius (Agaricales, Basidiomycota). Mycologia. 96: 1042-58. PMID 21148925  1
2004 Diezmann S, Cox CJ, Schönian G, Vilgalys RJ, Mitchell TG. Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. Journal of Clinical Microbiology. 42: 5624-35. PMID 15583292 DOI: 10.1128/JCM.42.12.5624-5635.2004  1
2004 Yahr R, Vilgalys R, Depriest PT. Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens. Molecular Ecology. 13: 3367-78. PMID 15487996 DOI: 10.1111/j.1365-294X.2004.02350.x  1
2004 Marra RE, Huang JC, Fung E, Nielsen K, Heitman J, Vilgalys R, Mitchell TG. A genetic linkage map of Cryptococcus neoformans variety neoformans serotype D (Filobasidiella neoformans). Genetics. 167: 619-31. PMID 15238516 DOI: 10.1534/genetics.103.023408  1
2004 James TY, Liou SR, Vilgalys R. The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor. Fungal Genetics and Biology : Fg & B. 41: 813-25. PMID 15219565 DOI: 10.1016/j.fgb.2004.04.005  1
2004 Zervakis GI, Moncalvo JM, Vilgalys R. Molecular phylogeny, biogeography and speciation of the mushroom species Pleurotus cystidiosus and allied taxa. Microbiology (Reading, England). 150: 715-26. PMID 14993321  1
2004 James TY, Kües U, Rehner SA, Vilgalys R. Evolution of the gene encoding mitochondrial intermediate peptidase and its cosegregation with the A mating-type locus of mushroom fungi. Fungal Genetics and Biology : Fg & B. 41: 381-90. PMID 14761798 DOI: 10.1016/j.fgb.2003.11.008  1
2003 Davis EC, Franklin JB, Shaw AJ, Vilgalys R. Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. American Journal of Botany. 90: 1661-7. PMID 21653342 DOI: 10.3732/ajb.90.11.1661  1
2003 Ceresini PC, Shew HD, Vilgalys RJ, Gale LR, Cubeta MA. Detecting Migrants in Populations of Rhizoctonia solani Anastomosis Group 3 from Potato in North Carolina Using Multilocus Genotype Probabilities. Phytopathology. 93: 610-5. PMID 18942984 DOI: 10.1094/PHYTO.2003.93.5.610  1
2003 Litvintseva AP, Marra RE, Nielsen K, Heitman J, Vilgalys R, Mitchell TG. Evidence of sexual recombination among Cryptococcus neoformans serotype A isolates in sub-Saharan Africa. Eukaryotic Cell. 2: 1162-8. PMID 14665451 DOI: 10.1128/EC.2.6.1162-1168.2003  1
2003 Pringle A, Moncalvo JM, Vilgalys R. Revisiting the rDNA sequence diversity of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica. Mycorrhiza. 13: 227-31. PMID 12898351 DOI: 10.1007/s00572-003-0249-2  1
2003 Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ, Longcore JE. Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology. 12: 395-403. PMID 12535090 DOI: 10.1046/j.1365-294X.2003.01732.x  1
2003 Vilgalys R. Taxonomic misidentification in public DNA databases New Phytologist. 160: 4-5. DOI: 10.1046/j.1469-8137.2003.00894.x  1
2002 Peintner U, Horak E, Moser MM, Vilgalys R. Phylogeny of Rozites, Cuphocybe and Rapacea inferred from ITS and LSU rDNA sequences. Mycologia. 94: 620-9. PMID 21156535  1
2002 Ceresini PC, Shew HD, Vilgalys RJ, Rosewich UL, Cubeta MA. Genetic structure of populations of Rhizoctonia solani AG-3 on potato in eastern North Carolina. Mycologia. 94: 450-60. PMID 21156516  1
2002 Ceresini PC, Shew HD, Vilgalys RJ, Cubeta MA. Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina. Mycologia. 94: 437-49. PMID 21156515  1
2002 Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Catherine Aime M, Hofstetter V, Verduin SJ, Larsson E, Baroni TJ, Greg Thorn R, Jacobsson S, Clémençon H, Miller OK. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution. 23: 357-400. PMID 12099793 DOI: 10.1016/S1055-7903(02)00027-1  1
2002 Xu J, Luo G, Vilgalys RJ, Brandt ME, Mitchell TG. Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology (Reading, England). 148: 203-12. PMID 11782512  1
2002 Hofstetter V, Clémençon H, Vilgalys R, Moncalvo JM. Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycota) based on nuclear and mitochondrial rDNA sequences Mycological Research. 106: 1043-1059. DOI: 10.1017/S095375620200641X  1
2002 Henkel TW, Terborgh J, Vilgalys RJ. Ectomycorrhizal fungi and their leguminous hosts in the Pakaraima Mountains of Guyana Mycological Research. 106: 515-531. DOI: 10.1017/S0953756202005919  1
2002 Redhead SA, Lutzoni F, Moncalvo JM, Vilgalys R. Phylogeny of agarics: Partial systematics solutions for core Omphalinoid genera in the Agaricales (Euagarics) Mycotaxon. 83: 19-57.  1
2002 Peintner U, Horak E, Moser M, Vilgalys R. Rozites, Cuphocybe and Rapacea are taxonomic synonyms of Cortinarius: New combinations and new names Mycotaxon. 83: 447-451.  1
2002 Peintner U, Moser M, Vilgalys R. Thaxterogaster is a taxonomic synonym of Cortinarius: New combinations and new names Mycotaxon. 81: 177-184.  1
2001 Peintner U, Bougher NL, Castellano MA, Moncalvo JM, Moser MM, Trappe JM, Vilgalys R. Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). American Journal of Botany. 88: 2168-79. PMID 21669649  1
2001 Kües U, James TY, Vilgalys R, Challen MP. The chromosomal region containing pab-1, mip, and the A mating type locus of the secondarily homothallic homobasidiomycete Coprinus bilanatus. Current Genetics. 39: 16-24. PMID 11318102 DOI: 10.1007/s002940000176  1
2001 James TY, Vilgalys R. Abundance and diversity of Schizophyllum commune spore clouds in the Caribbean detected by selective sampling. Molecular Ecology. 10: 471-9. PMID 11298961 DOI: 10.1046/j.1365-294X.2001.01224.x  1
2001 Xu J, Onyewu C, Yoell HJ, Ali RY, Vilgalys RJ, Mitchell TG. Dynamic and heterogeneous mutations to fluconazole resistance in Cryptococcus neoformans. Antimicrobial Agents and Chemotherapy. 45: 420-7. PMID 11158735 DOI: 10.1128/AAC.45.2.420-427.2001  1
2001 James TY, Moncalvo JM, Li S, Vilgalys R. Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics. 157: 149-61. PMID 11139499  0.92
2001 Wagner RP, Crow JF. The other fly room: J. T. Patterson and Texas genetics. Genetics. 157: 1-5. PMID 11139486  1
2001 Mueller GM, Wu QX, Huang YQ, Guo SY, Aldana-Gomez R, Vilgalys R. Assessing biogeographic relationships between North American and Chinese macrofungi Journal of Biogeography. 28: 271-281. DOI: 10.1046/j.1365-2699.2001.00540.x  1
2001 Hughes KW, Petersen RH, Johnson JE, Moncalvo JM, Vilgalys R, Redhead SA, Thomas T, McGhee LL. Infragenic phylogeny of Collybia s. str. based on sequences of ribosomal ITS and LSU regions Mycological Research. 105: 164-172. DOI: 10.1017/S0953756200003415  1
2001 Gonzalez D, Carling DE, Kuninaga S, Vilgalys R, Cubetae MA. Ribosomal DNA systematics of Ceratobasidium and Thanatephorus with Rhizoctonia anamorphs Mycologia. 93: 1138-1150.  1
2001 Redhead SA, Vilgalys R, Moncalvo JM, Johnson J, Hopple J.S. J. Coprinus Pers. and the disposition of Coprinus species sensu lato Taxon. 50: 203-241.  1
2000 Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology. 49: 278-305. PMID 12118409  1
2000 Schönian G, Forche A, Tietz HJ, Müller M, Gräser Y, Vilgalys R, Mitchell TG, Presber W. [Genetic structure of geographically different populations of candida albicans]. Mycoses. 43: 51-6. PMID 11291578  1
2000 Forche A, Xu J, Vilgalys R, Mitchell TG. Development and characterization of a genetic linkage map of Cryptococcus neoformans var. neoformans using amplified fragment length polymorphisms and other markers. Fungal Genetics and Biology : Fg & B. 31: 189-203. PMID 11273681 DOI: 10.1006/fgbi.2000.1240  1
2000 McEwen JG, Taylor JW, Carter D, Xu J, Felipe MS, Vilgalys R, Mitchell TG, Kasuga T, White T, Bui T, Soares CM. Molecular typing of pathogenic fungi. Medical Mycology. 38: 189-97. PMID 11204145  1
2000 Xu J, Vilgalys R, Mitchell TG. Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Molecular Ecology. 9: 1471-81. PMID 11050543 DOI: 10.1046/j.1365-294X.2000.01021.x  1
2000 Moncalvo JM, Drehmel D, Vilgalys R. Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications. Molecular Phylogenetics and Evolution. 16: 48-63. PMID 10877939 DOI: 10.1006/mpev.2000.0782  1
2000 Xu J, Ramos AR, Vilgalys R, Mitchell TG. Clonal and spontaneous origins of fluconazole resistance in Candida albicans. Journal of Clinical Microbiology. 38: 1214-20. PMID 10699025  1
2000 Xu J, Ali RY, Gregory DA, Amick D, Lambert SE, Yoell HJ, Vilgalys RJ, Mitchell TG. Uniparental mitochondrial transmission in sexual crosses in Cryptococcus neoformans. Current Microbiology. 40: 269-73. PMID 10688697 DOI: 10.1007/s002849910053  1
2000 James TY, Porter D, Leander CA, Vilgalys R, Longcore JE. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics Canadian Journal of Botany. 78: 336-350. DOI: 10.1139/b00-009  1
2000 Isikhuemhen OS, Nerud F, Vilgalys R. Cultivation studies on wild and hybrid strains of Pleurotus tuberregium (Fr.) Sing. on wheat straw substrate World Journal of Microbiology and Biotechnology. 16: 431-435. DOI: 10.1023/A:1008958319418  1
2000 Isikhuemhen OS, Moncalvo JM, Nerud F, Vilgalys R. Mating compatibility and phylogeography in Pleurotus tuberregium Mycological Research. 104: 732-737. DOI: 10.1017/S0953756299001926  1
2000 Redhead SA, Seifert KA, Vilgalys R, Moncalvo JM. Rhacophyllus and Zerovaemyces - Teleomorphs or anamorphs? Taxon. 49: 789-798.  1
2000 Thorn RG, Moncalvo JM, Reddy CA, Vilgalys R. Phylogenetic analyses and the distribution of nematophagy support a monophyletic Pleurotaceae within the polyphyletic pleurotoid-lentinoid fungi Mycologia. 92: 241-252.  1
2000 Pringle A, Moncalvo JM, Vilgalys R. High levels of variation in ribosomal DNA sequences within and among spores of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica Mycologia. 92: 259-268.  1
1999 James TY, Porter D, Hamrick JL, Vilgalys R. EVIDENCE FOR LIMITED INTERCONTINENTAL GENE FLOW IN THE COSMOPOLITAN MUSHROOM, SCHIZOPHYLLUM COMMUNE. Evolution; International Journal of Organic Evolution. 53: 1665-1677. PMID 28565469 DOI: 10.1111/j.1558-5646.1999.tb04552.x  0.92
1999 Forche A, Schönian G, Gräser Y, Vilgalys R, Mitchell TG. Genetic structure of typical and atypical populations of Candida albicans from Africa. Fungal Genetics and Biology : Fg & B. 28: 107-25. PMID 10587473 DOI: 10.1006/fgbi.1999.1164  1
1999 Hopple JS, Vilgalys R. Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Molecular Phylogenetics and Evolution. 13: 1-19. PMID 10508535 DOI: 10.1006/mpev.1999.0634  1
1999 Gräser Y, El Fari M, Vilgalys R, Kuijpers AF, De Hoog GS, Presber W, Tietz H. Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region. Medical Mycology. 37: 105-14. PMID 10361266 DOI: 10.1046/j.1365-280X.1999.00203.x  1
1999 Xu J, Vilgalys R, Mitchell TG. Lack of genetic differentiation between two geographically diverse samples of Candida albicans isolated from patients infected with human immunodeficiency virus. Journal of Bacteriology. 181: 1369-73. PMID 9973371  1
1999 Xu J, Mitchell TG, Vilgalys R. PCR-restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candida albicans. Molecular Ecology. 8: 59-73. PMID 9919698 DOI: 10.1046/j.1365-294X.1999.00523.x  1
1999 James TY, Porter D, Hamrick JL, Vilgalys R. Evidence for limited intercontinental gene flow in the cosmopolitan mushroom, Schizophyllum commune Evolution. 53: 1665-1677.  1
1999 Drehmel D, Moncalvo JM, Vilgalys R. Molecular phylogeny of Amanita based on large-subunit ribosomal DNA sequences: Implications for taxonomy and character evolution Mycologia. 91: 610-618.  1
1999 Baroni TJ, Legon NW, Vilgalys R, Lodge DJ. Calocybe cyanea - A rare and beautiful agaric is discovered in Puerto Rico Mycologist. 13: 7-10.  1
1998 Xu J, Vilgalys R, Mitchell TG. Colony size can be used to determine the MIC of fluconazole for pathogenic yeasts. Journal of Clinical Microbiology. 36: 2383-5. PMID 9666032  1
1998 Johnson J, Vilgalys R. Phylogenetic systematics of Lepiota sensu lato based on nuclear large subunit rDNA evidence Mycologia. 90: 971-979.  1
1997 Cubeta MA, Vilgalys R. Population Biology of the Rhizoctonia solani Complex. Phytopathology. 87: 480-4. PMID 18945130 DOI: 10.1094/PHYTO.1997.87.4.480  1
1997 Lewis LA, Mishler BD, Vilgalys R. Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL. Molecular Phylogenetics and Evolution. 7: 377-93. PMID 9187096 DOI: 10.1006/mpev.1996.0395  1
1997 McPartland JM, Vilgalys RJ, Cubeta MA. Mushroom poisoning. American Family Physician. 55: 1797-800, 1805-9, 18. PMID 9105206  1
1996 Yoder AD, Vilgalys R, Ruvolo M. Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions. Molecular Biology and Evolution. 13: 1339-50. PMID 8952078  1
1996 Gräser Y, Volovsek M, Arrington J, Schönian G, Presber W, Mitchell TG, Vilgalys R. Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination. Proceedings of the National Academy of Sciences of the United States of America. 93: 12473-7. PMID 8901606 DOI: 10.1073/pnas.93.22.12473  1
1996 Haase G, Spatafora JW, Mitchell TG, Vilgalys R. Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens [2] Journal of Clinical Microbiology. 34: 2049-2050. PMID 8818914  1
1996 Yoder AD, Cartmill M, Ruvolo M, Smith K, Vilgalys R. Ancient single origin for Malagasy primates. Proceedings of the National Academy of Sciences of the United States of America. 93: 5122-6. PMID 8643538 DOI: 10.1073/pnas.93.10.5122  1
1995 Spatafora JW, Mitchell TG, Vilgalys R. Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. Journal of Clinical Microbiology. 33: 1322-6. PMID 7615749 DOI: 10.1128/jcm.33.5.1322-1326.1995  1
1994 Vilgalys R, Sun BL. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 91: 4599-603. PMID 8183955  1
1994 Vilgalys R, Cubeta MA. Molecular systematics and population biology of Rhizoctonia Annual Review of Phytopathology. 32: 135-155.  1
1994 Vilgalys R, Sun Bao Lin. Assessment of species distributions in Pleurotus based on trapping of airborne basidiospores Mycologia. 86: 270-274.  1
1993 Meyer W, Mitchell TG, Freedman EZ, Vilgalys R. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. Journal of Clinical Microbiology. 31: 2274-80. PMID 8408543  1
1993 Vilgalys R, Smith A, Bao Lin Sun, Miller OK. Intersterility groups in the Pleurotus ostreatus complex from the continental United States and adjacent Canada Canadian Journal of Botany. 71: 113-128. DOI: 10.1139/b93-013  1
1993 Moncalvo JM, Rehner SA, Vilgalys R. Systematics of Lyophyllum section difformia based on evidence from culture studies and ribosomal DNA sequences Mycologia. 85: 788-794.  1
1992 Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution. 1: 231-41. PMID 1342940 DOI: 10.1016/1055-7903(92)90020-H  1
1992 Kay E, Vilgalys R. Spatial distribution and genetic relationships among individuals in a natural population of the oyster mushroom Pleurotus ostreatus Mycologia. 84: 173-182.  1
1991 Vilgalys R. Speciation and species concepts in the Collybia dryophila complex Mycologia. 83: 758-773.  1
1991 Hibbett DS, Vilgalys R. Evolutionary relationships of Lentinus to the Polyporaceae: evidence from restriction analysis of enzymatically amplified ribosomal DNA Mycologia. 83: 425-439.  1
1990 Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology. 172: 4238-46. PMID 2376561  1
1990 Vilgalys R, Gonzalez D. Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola Current Genetics. 18: 277-280. PMID 2249259 DOI: 10.1007/BF00318394  1
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