David S. Hibbett, Ph.D. - Publications

Affiliations: 
Biology Clark University, Worcester, MA, United States 
Area:
Fungal evolution and phylogenetics

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Menolli N, Sánchez-Ramírez S, Sánchez-García M, Wang C, Patev S, Kazue Ishikawa N, Mata JL, Rafael Lenz A, Vargas-Isla R, Liderman L, Lamb M, Nuhn M, Hughes KW, Xiao Y, Hibbett DS. Global phylogeny of the Shiitake mushroom and related Lentinula species uncovers novel diversity and suggests an origin in the Neotropics. Molecular Phylogenetics and Evolution. 107494. PMID 35490968 DOI: 10.1016/j.ympev.2022.107494  0.69
2021 Zhang J, Shen N, Li C, Xiang X, Liu G, Gui Y, Patev S, Hibbett DS, Barry K, Andreopoulos W, Lipzen A, Riley R, He G, Yan M, Grigoriev IV, et al. Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus . Journal of Advanced Research. 38: 91-106. PMID 35572413 DOI: 10.1016/j.jare.2021.09.008  0.337
2021 Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, ... ... Hibbett D, et al. Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyper-diverse lineage of mushroom-forming fungi. The New Phytologist. PMID 34861049 DOI: 10.1111/nph.17892  0.814
2020 Sánchez-García M, Ryberg M, Khan FK, Varga T, Nagy LG, Hibbett DS. Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 33257574 DOI: 10.1073/pnas.1922539117  0.737
2020 Ruiz-Dueñas FJ, Barrasa JM, Sánchez-García M, Camarero S, Miyauchi S, Serrano A, Linde D, Babiker R, Drula E, Ayuso-Fernández I, Pacheco R, Padilla G, Ferreira P, Barriuso J, Kellner H, ... ... Hibbett D, et al. Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity. Molecular Biology and Evolution. PMID 33211093 DOI: 10.1093/molbev/msaa301  0.745
2020 Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, ... ... Hibbett D, et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications. 11: 5125. PMID 33046698 DOI: 10.1038/s41467-020-18795-w  0.83
2019 Zanne AE, Abarenkov K, Afkhami ME, Aguilar-Trigueros CA, Bates S, Bhatnagar JM, Busby PE, Christian N, Cornwell WK, Crowther TW, Flores-Moreno H, Floudas D, Gazis R, Hibbett D, Kennedy P, et al. Fungal functional ecology: bringing a trait-based approach to plant-associated fungi. Biological Reviews of the Cambridge Philosophical Society. PMID 31763752 DOI: 10.1111/Brv.12570  0.345
2019 Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, ... ... Hibbett DS, et al. Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 30902897 DOI: 10.1073/Pnas.1817822116  0.414
2019 Varga T, Krizsán K, Földi C, Dima B, Sánchez-García M, Sánchez-Ramírez S, Szöllősi GJ, Szarkándi JG, Papp V, Albert L, Andreopoulos W, Angelini C, Antonín V, Barry KW, Bougher NL, ... ... Hibbett DS, et al. Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecology & Evolution. PMID 30886374 DOI: 10.1038/S41559-019-0834-1  0.818
2019 Wu B, Gaskell J, Zhang J, Toapanta C, Ahrendt S, Grigoriev IV, Blanchette RA, Schilling JS, Master E, Cullen D, Hibbett DS. Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi. The Isme Journal. PMID 30718807 DOI: 10.1038/S41396-019-0359-2  0.444
2018 Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R. Phylogenetic taxon definitions for and . Ima Fungus. 9: 291-298. PMID 30622884 DOI: 10.5598/imafungus.2018.09.02.05  0.775
2018 Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S. Contemporaneous radiations of fungi and plants linked to symbiosis. Nature Communications. 9: 5451. PMID 30575731 DOI: 10.1038/S41467-018-07849-9  0.76
2018 Wu B, Xu Z, Knudson A, Carlson A, Chen N, Kovaka S, LaButti K, Lipzen A, Pennachio C, Riley R, Schakwitz W, Umezawa K, Ohm RA, Grigoriev IV, Nagy LG, ... ... Hibbett D, et al. Genomics and development of Lentinus tigrinus, a white-rot wood-decaying mushroom with dimorphic fruiting bodies. Genome Biology and Evolution. PMID 30398645 DOI: 10.1093/Gbe/Evy246  0.418
2018 Krah FS, Bässler C, Heibl C, Soghigian J, Schaefer H, Hibbett DS. Evolutionary dynamics of host specialization in wood-decay fungi. Bmc Evolutionary Biology. 18: 119. PMID 30075699 DOI: 10.1186/S12862-018-1229-7  0.401
2018 Wu B, Gaskell J, Held BW, Toapanta C, Vuong T, Ahrendt S, Lipzen A, Zhang J, Schilling JS, Master E, Grigoriev IV, Blanchette RA, Cullen D, Hibbett DS. Substrate-Specific Differential Gene Expression and RNA editing in the Brown Rot Fungus . Applied and Environmental Microbiology. PMID 29884757 DOI: 10.1128/Aem.00991-18  0.389
2017 Justo A, Miettinen O, Floudas D, Ortiz-Santana B, Sjökvist E, Lindner D, Nakasone K, Niemelä T, Larsson KH, Ryvarden L, Hibbett DS. A revised family-level classification of the Polyporales (Basidiomycota). Fungal Biology. 121: 798-824. PMID 28800851 DOI: 10.1016/J.Funbio.2017.05.010  0.454
2017 Cai C, Leschen RA, Hibbett DS, Xia F, Huang D. Mycophagous rove beetles highlight diverse mushrooms in the Cretaceous. Nature Communications. 8: 14894. PMID 28300055 DOI: 10.1038/Ncomms14894  0.442
2016 Nagy LG, Riley R, Bergmann PJ, Krizsán K, Martin FM, Grigoriev IV, Cullen D, Hibbett DS. Genetic bases of fungal white rot wood decay predicted by phylogenomic analysis of correlated gene-phenotype evolution. Molecular Biology and Evolution. PMID 27834665 DOI: 10.1093/Molbev/Msw238  0.407
2016 Martin F, Kohler A, Murat C, Veneault-Fourrey C, Hibbett DS. Unearthing the roots of ectomycorrhizal symbioses. Nature Reviews. Microbiology. PMID 27795567 DOI: 10.1038/Nrmicro.2016.149  0.422
2016 Hibbett D, Abarenkov K, Koljalg U, Opik M, Chai B, Cole JR, Wang Q, Crous PW, Robert VA, Helgason T, Herr J, Kirk P, Lueschow S, O'Donnell K, Nilsson H, et al. Sequence-based classification and identification of Fungi. Mycologia. PMID 27760854 DOI: 10.3852/16-130  0.4
2016 Miettinen O, Riley R, Barry K, Cullen D, de Vries RP, Hainaut M, Hatakka A, Henrissat B, Hildén K, Kuo R, LaButti K, Lipzen A, Mäkelä MR, Sandor L, Spatafora JW, ... ... Hibbett DS, et al. Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announcements. 4. PMID 27634999 DOI: 10.1128/Genomea.00976-16  0.329
2016 Hibbett D. Digital identifiers for fungal species--Response. Science (New York, N.Y.). 352: 1183. PMID 27257250 DOI: 10.1126/Science.Aaf7370  0.386
2016 Hibbett D. MICROBIOLOGY. The invisible dimension of fungal diversity. Science (New York, N.Y.). 351: 1150-1. PMID 26965611 DOI: 10.1126/Science.Aae0380  0.459
2016 Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS. The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biology. 120: 26-42. PMID 26693682 DOI: 10.1016/J.Funbio.2015.10.002  0.452
2016 Hawksworth DL, Hibbett DS, Kirk PM, Lücking R. (308–310) Proposals to permit DNA sequence data to serve as types of names of fungi Taxon. 65: 899-900. DOI: 10.12705/654.31  0.319
2015 Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, LaButti K, Kuo R, Ohm RA, ... ... Hibbett DS, et al. Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities. Molecular Biology and Evolution. PMID 26659563 DOI: 10.1093/Molbev/Msv337  0.43
2015 Shah F, Nicolás C, Bentzer J, Ellström M, Smits M, Rineau F, Canbäck B, Floudas D, Carleer R, Lackner G, Braesel J, Hoffmeister D, Henrissat B, Ahrén D, Johansson T, ... Hibbett DS, et al. Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. The New Phytologist. PMID 26527297 DOI: 10.1111/Nph.13722  0.399
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.753
2015 Floudas D, Hibbett DS. Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling. Fungal Biology. 119: 679-719. PMID 26228559 DOI: 10.1016/J.Funbio.2015.04.003  0.535
2015 Young D, Rice J, Martin R, Lindquist E, Lipzen A, Grigoriev I, Hibbett D. Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation. Plos One. 10: e0130381. PMID 26111162 DOI: 10.1371/Journal.Pone.0130381  0.303
2015 Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, ... ... Hibbett DS, et al. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics. 47: 410-5. PMID 25706625 DOI: 10.1038/Ng.3223  0.673
2015 Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, ... ... Hibbett DS, et al. Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genetics and Biology : Fg & B. 76: 78-92. PMID 25683379 DOI: 10.1016/J.Fgb.2015.02.002  0.407
2015 Seelan JS, Justo A, Nagy LG, Grand EA, Redhead SA, Hibbett D. Phylogenetic relationships and morphological evolution in Lentinus, Polyporellus and Neofavolus, emphasizing southeastern Asian taxa. Mycologia. 107: 460-74. PMID 25661717 DOI: 10.3852/14-084  0.521
2015 Martin R, Gazis R, Skaltsas D, Chaverri P, Hibbett D. Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea. Mycologia. 107: 284-97. PMID 25572095 DOI: 10.3852/14-206  0.469
2015 Herr JR, Opik M, Hibbett DS. Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms. The New Phytologist. 205: 27-31. PMID 25427218 DOI: 10.1111/Nph.13180  0.366
2015 Morin E, Kohler A, Kuo A, Veneault-Fourrey C, Pellegrin C, Lindquist E, Griegoriev IV, Hibbett DS, Martin FM. Exploring genome diversity of mycorrhizal fungi to understand symbiosis F1000research. 4. DOI: 10.7490/F1000Research.1110976.1  0.354
2015 Halling RE, Fechner N, Nuhn M, Osmundson T, Soytong K, Arora D, Binder M, Hibbett D. Evolutionary relationships of Heimioporus and Boletellus (Boletales), with an emphasis on Australian taxa including new species and new combinations in Aureoboletus, Hemileccinum and Xerocomus Australian Systematic Botany. 28: 1-22. DOI: 10.1071/Sb14049  0.741
2014 Nagy LG, Ohm RA, Kovács GM, Floudas D, Riley R, Gácser A, Sipiczki M, Davis JM, Doty SL, de Hoog GS, Lang BF, Spatafora JW, Martin FM, Grigoriev IV, Hibbett DS. Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts. Nature Communications. 5: 4471. PMID 25034666 DOI: 10.1038/Ncomms5471  0.412
2014 Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R, Lindquist EA, Sun H, LaButti KM, Schmutz J, Jabbour D, ... ... Hibbett DS, et al. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proceedings of the National Academy of Sciences of the United States of America. 111: 9923-8. PMID 24958869 DOI: 10.1073/Pnas.1400592111  0.47
2014 Carlson A, Justo A, Hibbett DS. Species delimitation in Trametes: a comparison of ITS, RPB1, RPB2 and TEF1 gene phylogenies. Mycologia. 106: 735-45. PMID 24898532 DOI: 10.3852/13-275  0.374
2014 Justo A, Malysheva E, Bulyonkova T, Vellinga EC, Cobian G, Nguyen N, Minnis AM, Hibbett DS. Molecular phylogeny and phylogeography of Holarctic species of Pluteus section Pluteus (Agaricales: Pluteaceae), with description of twelve new species Phytotaxa. 180: 1-85. DOI: 10.11646/Phytotaxa.180.1.1  0.383
2013 Drew BT, Gazis R, Cabezas P, Swithers KS, Deng J, Rodriguez R, Katz LA, Crandall KA, Hibbett DS, Soltis DE. Lost branches on the tree of life. Plos Biology. 11: e1001636. PMID 24019756 DOI: 10.1371/Journal.Pbio.1001636  0.392
2013 Binder M, Justo A, Riley R, Salamov A, Lopez-Giraldez F, Sjökvist E, Copeland A, Foster B, Sun H, Larsson E, Larsson KH, Townsend J, Grigoriev IV, Hibbett DS. Phylogenetic and phylogenomic overview of the Polyporales. Mycologia. 105: 1350-73. PMID 23935031 DOI: 10.3852/13-003  0.739
2013 Hori C, Gaskell J, Igarashi K, Samejima M, Hibbett D, Henrissat B, Cullen D. Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay. Mycologia. 105: 1412-27. PMID 23935027 DOI: 10.3852/13-072  0.363
2013 Ortiz-Santana B, Lindner DL, Miettinen O, Justo A, Hibbett DS. A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales). Mycologia. 105: 1391-411. PMID 23935025 DOI: 10.3852/13-051  0.506
2013 Nuhn ME, Binder M, Taylor AF, Halling RE, Hibbett DS. Phylogenetic overview of the Boletineae. Fungal Biology. 117: 479-511. PMID 23931115 DOI: 10.1016/J.Funbio.2013.04.008  0.724
2013 Hibbett DS, Stajich JE, Spatafora JW. Toward genome-enabled mycology. Mycologia. 105: 1339-49. PMID 23928422 DOI: 10.3852/13-196  0.319
2013 Ruiz-Dueñas FJ, Lundell T, Floudas D, Nagy LG, Barrasa JM, Hibbett DS, Martínez AT. Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes. Mycologia. 105: 1428-44. PMID 23921235 DOI: 10.3852/13-059  0.47
2013 Losos JB, Arnold SJ, Bejerano G, Brodie ED, Hibbett D, Hoekstra HE, Mindell DP, Monteiro A, Moritz C, Orr HA, Petrov DA, Renner SS, Ricklefs RE, Soltis PS, Turner TL. Evolutionary biology for the 21st century. Plos Biology. 11: e1001466. PMID 23319892 DOI: 10.1371/Journal.Pbio.1001466  0.352
2013 Hibbett DS, Taylor JW. Fungal systematics: is a new age of enlightenment at hand? Nature Reviews. Microbiology. 11: 129-33. PMID 23288349 DOI: 10.1038/Nrmicro2963  0.377
2013 Taylor JW, Hibbett DS. Toward Sequence-Based Classification of Fungal Species Ima Fungus. 4: 33-34. DOI: 10.1007/BF03449308  0.379
2012 Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, ... ... Hibbett DS, et al. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America. 109: 17501-6. PMID 23045686 DOI: 10.1073/Pnas.1206847109  0.425
2012 Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, ... ... Hibbett DS, et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science (New York, N.Y.). 336: 1715-9. PMID 22745431 DOI: 10.1126/Science.1221748  0.808
2012 Halling RE, Nuhn M, Fechner NA, Osmundson TW, Soytong K, Arora D, Hibbett DS, Binder M. Sutorius: a new genus for Boletus eximius. Mycologia. 104: 951-61. PMID 22495445 DOI: 10.3852/11-376  0.742
2012 Wilson AW, Binder M, Hibbett DS. Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota). The New Phytologist. 194: 1079-95. PMID 22471405 DOI: 10.1111/J.1469-8137.2012.04109.X  0.74
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 5458-63. PMID 22434909 DOI: 10.1073/Pnas.1119912109  0.701
2012 Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, Furukawa K, Hesse C, Hohmann S, James TY, LaButti K, Lapidus A, Lindquist E, Lucas S, Miller K, ... ... Hibbett DS, et al. The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. Fungal Genetics and Biology : Fg & B. 49: 217-26. PMID 22326418 DOI: 10.1016/J.Fgb.2012.01.007  0.811
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Ryu JS, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109) Proceedings of the National Academy of Sciences of the United States of America. 109: 8352. DOI: 10.1073/Pnas.1206295109  0.666
2012 Halling RE, Nuhn M, Osmundson T, Fechner N, Trappe JM, Soytong K, Arora D, Hibbett DS, Binder M. Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus Australian Systematic Botany. 25: 418-431. DOI: 10.1071/Sb12028  0.758
2012 Neves MA, Binder M, Halling R, Hibbett D, Soytong K. The phylogeny of selected Phylloporus species, inferred from NUC-LSU and ITS sequences, and descriptions of new species from the Old World Fungal Diversity. 55: 109-123. DOI: 10.1007/S13225-012-0154-0  0.747
2011 Hibbett D, Glotzer D. Where are all the undocumented fungal species? A study of Mortierella demonstrates the need for sequence-based classification New Phytologist. 191: 592-596. PMID 21770943 DOI: 10.1111/J.1469-8137.2011.03819.X  0.488
2011 Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M, Blumentritt M, Coutinho PM, Cullen D, de Vries RP, Gathman A, ... ... Hibbett DS, et al. The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi. Science (New York, N.Y.). 333: 762-5. PMID 21764756 DOI: 10.1126/Science.1205411  0.674
2011 Martin F, Cullen D, Hibbett D, Pisabarro A, Spatafora JW, Baker SE, Grigoriev IV. Sequencing the fungal tree of life New Phytologist. 190: 818-821. PMID 21401614 DOI: 10.1111/J.1469-8137.2011.03688.X  0.346
2011 Justo A, Vizzini A, Minnis AM, Menolli N, Capelari M, Rodríguez O, Malysheva E, Contu M, Ghignone S, Hibbett DS. Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): taxonomy and character evolution. Fungal Biology. 115: 1-20. PMID 21215950 DOI: 10.1016/J.Funbio.2010.09.012  0.552
2011 Garcia-Sandoval R, Wang Z, Binder M, Hibbett DS. Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot. Mycologia. 103: 510-24. PMID 21186327 DOI: 10.3852/10-209  0.767
2011 Wilson AW, Binder M, Hibbett DS. Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis. Evolution; International Journal of Organic Evolution. 65: 1305-22. PMID 21166793 DOI: 10.1111/J.1558-5646.2010.01214.X  0.728
2011 Seitzman BH, Ouimette A, Mixon RL, Hobbie EA, Hibbett DS. Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses. Mycologia. 103: 280-90. PMID 21139028 DOI: 10.3852/10-195  0.432
2011 Grigoriev IV, Cullen D, Goodwin SB, Hibbett D, Jeffries TW, Kubicek CP, Kuske C, Magnuson JK, Martin F, Spatafora JW, Tsang A, Baker SE. Fueling the future with fungal genomics Mycology. 2: 192-209. DOI: 10.1080/21501203.2011.584577  0.376
2011 Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH. Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences Fungal Biology Reviews. 25: 38-47. DOI: 10.1016/J.Fbr.2011.01.001  0.479
2011 Justo A, Hibbett DS. Phylogenetic classification of trametes (basidiomycota, polyporales) based on a five-marker dataset Taxon. 60: 1567-1583. DOI: 10.1002/Tax.606003  0.368
2010 Morgenstern I, Robertson DL, Hibbett DS. Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales. Applied and Environmental Microbiology. 76: 6431-40. PMID 20675443 DOI: 10.1128/Aem.00547-10  0.671
2010 Binder M, Larsson KH, Matheny PB, Hibbett DS. Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms. Mycologia. 102: 865-80. PMID 20648753 DOI: 10.3852/09-288  0.81
2010 Justo A, Morgenstern I, Hallen-Adams HE, Hibbett DS. Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions. Mycologia. 102: 675-88. PMID 20524599 DOI: 10.3852/09-191  0.698
2010 Slot JC, Hallstrom KN, Matheny PB, Hosaka K, Mueller G, Robertson DL, Hibbett DS. Phylogenetic, structural and functional diversification of nitrate transporters in three ecologically diverse clades of mushroom-forming fungi Fungal Ecology. 3: 160-177. DOI: 10.1016/J.Funeco.2009.10.001  0.814
2009 Hibbett DS, Ohman A, Kirk PM. Fungal ecology catches fire. The New Phytologist. 184: 279-82. PMID 19796334 DOI: 10.1111/J.1469-8137.2009.03042.X  0.36
2009 Stajich JE, Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. The fungi. Current Biology : Cb. 19: R840-5. PMID 19788875 DOI: 10.1016/J.Cub.2009.07.004  0.766
2009 McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R. The search for the fungal tree of life. Trends in Microbiology. 17: 488-97. PMID 19782570 DOI: 10.1016/J.Tim.2009.08.001  0.794
2009 Hibbett DS, Matheny PB. The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses. Bmc Biology. 7: 13. PMID 19284559 DOI: 10.1186/1741-7007-7-13  0.674
2009 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106  0.774
2009 Matheny PB, Aime MC, Bougher NL, Buyck B, Desjardin DE, Horak E, Kropp BR, Lodge DJ, Soytong K, Trappe JM, Hibbett DS. Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae Journal of Biogeography. 36: 577-592. DOI: 10.1111/J.1365-2699.2008.02055.X  0.823
2008 Morgenstern I, Klopman S, Hibbett DS. Molecular evolution and diversity of lignin degrading heme peroxidases in the Agaricomycetes. Journal of Molecular Evolution. 66: 243-57. PMID 18292958 DOI: 10.1007/S00239-008-9079-3  0.666
2008 Ge ZW, Yang ZL, Zhang P, Matheny PB, Hibbett DS. Flammulina species from China inferred by morphological and molecular data Fungal Diversity. 32: 59-68.  0.665
2007 Slot JC, Hibbett DS. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. Plos One. 2: e1097. PMID 17971860 DOI: 10.1371/Journal.Pone.0001097  0.685
2007 Hibbett DS. After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century. Mycological Research. 111: 1001-18. PMID 17964768 DOI: 10.1016/J.Mycres.2007.01.012  0.481
2007 Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/J.Mycres.2007.03.004  0.812
2007 Slot JC, Hallstrom KN, Matheny PB, Hibbett DS. Diversification of NRT2 and the origin of its fungal homolog. Molecular Biology and Evolution. 24: 1731-43. PMID 17513882 DOI: 10.1093/Molbev/Msm098  0.794
2007 Kumar TK, Celio GJ, Matheny PB, McLaughlin DJ, Hibbett DS, Manimohan P. Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies. Mycological Research. 111: 268-74. PMID 17363232 DOI: 10.1016/J.Mycres.2006.12.003  0.708
2007 Matheny PB, Wang Z, Binder M, Curtis JM, Lim YW, Nilsson RH, Hughes KW, Hofstetter V, Ammirati JF, Schoch CL, Langer E, Langer G, McLaughlin DJ, Wilson AW, Frøslev T, ... ... Hibbett DS, et al. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Molecular Phylogenetics and Evolution. 43: 430-51. PMID 17081773 DOI: 10.1016/J.Ympev.2006.08.024  0.811
2007 Wilson AW, Hobbie EA, Hibbett DS. The ectomycorrhizal status of Calostoma cinnabarinum determined using isotopic, molecular, and morphological methods Canadian Journal of Botany. 85: 385-393. DOI: 10.1139/B07-026  0.393
2007 Louzan R, Wilson AW, Binder M, Hibbett DS. Phylogenetic placement of Diplocystis wrightii in the Sclerodermatineae (Boletales) based on nuclear ribosomal large subunit DNA sequences Mycoscience. 48: 66-69. DOI: 10.1007/S10267-006-0325-5  0.792
2006 Binder M, Hibbett DS, Wang Z, Farnham WF. Evolutionary relationships of Mycaureola dilseae (Agaricales), a basidiomycete pathogen of a subtidal rhodophyte. American Journal of Botany. 93: 547-56. PMID 21646215 DOI: 10.3732/Ajb.93.4.547  0.746
2006 Wang Z, Johnston PR, Takamatsu S, Spatafora JW, Hibbett DS. Toward a phylogenetic classification of the leotiomycetes based on rDNA data. Mycologia. 98: 1065-75. PMID 17486981 DOI: 10.3852/Mycologia.98.6.1065  0.524
2006 Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, ... ... Hibbett DS, et al. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia. 98: 982-95. PMID 17486974 DOI: 10.3852/Mycologia.98.6.982  0.811
2006 Binder M, Hibbett DS. Molecular systematics and biological diversification of Boletales. Mycologia. 98: 971-81. PMID 17486973 DOI: 10.3852/Mycologia.98.6.971  0.76
2006 Hibbett DS. A phylogenetic overview of the Agaricomycotina. Mycologia. 98: 917-25. PMID 17486968 DOI: 10.3852/Mycologia.98.6.917  0.466
2006 Aime MC, Matheny PB, Henk DA, Frieders EM, Nilsson RH, Piepenbring M, McLaughlin DJ, Szabo LJ, Begerow D, Sampaio JP, Bauer R, Weiss M, Oberwinkler F, Hibbett D. An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia. 98: 896-905. PMID 17486966 DOI: 10.3852/Mycologia.98.6.896  0.831
2006 Blackwell M, Hibbett DS, Taylor JW, Spatafora JW. Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha). Mycologia. 98: 829-37. PMID 17486960 DOI: 10.3852/Mycologia.98.6.829  0.397
2006 Dai YC, Wang Z, Binder M, Hibbett DS. Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes. Mycologia. 98: 584-92. PMID 17139851 DOI: 10.3852/Mycologia.98.4.584  0.746
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... ... Hibbett DS, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  0.814
2006 Blanco-Dios JB, Wang Z, Binder M, Hibbett DS. A new Sparassis species from Spain described using morphological and molecular data. Mycological Research. 110: 1227-31. PMID 17018255 DOI: 10.1016/J.Mycres.2006.07.012  0.749
2006 Wang Z, Binder M, Schoch CL, Johnston PR, Spatafora JW, Hibbett DS. Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Molecular Phylogenetics and Evolution. 41: 295-312. PMID 16837216 DOI: 10.1016/J.Ympev.2006.05.031  0.757
2006 Matheny PB, Gossmann JA, Zalar P, Kumar TKA, Hibbett DS. Resolving the phylogenetic position of the Wallemiomycetes: An enigmatic major lineage of Basidiomycota Canadian Journal of Botany. 84: 1794-1805. DOI: 10.1139/B06-128  0.631
2006 Dai Y, Wang Z, Binder M, Hibbett DS. Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes Mycologia. 98: 584-592. DOI: 10.1080/15572536.2006.11832661  0.685
2005 Wang Z, Binder M, Hibbett DS. Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological, and molecular studies. American Journal of Botany. 92: 1565-74. PMID 21646174 DOI: 10.3732/Ajb.92.9.1565  0.75
2005 Yang ZL, Matheny PB, Ge ZW, Slot JC, Hibbett DS. New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycological Research. 109: 1259-67. PMID 16279419 DOI: 10.1017/S0953756205003758  0.827
2005 Hibbett DS, Nilsson RH, Snyder M, Fonseca M, Costanzo J, Shonfeld M. Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi). Systematic Biology. 54: 660-8. PMID 16126660 DOI: 10.1080/10635150590947104  0.465
2005 Frøslev TG, Matheny PB, Hibbett DS. Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2, and ITS phylogenies. Molecular Phylogenetics and Evolution. 37: 602-18. PMID 16085431 DOI: 10.1016/J.Ympev.2005.06.016  0.694
2005 Binder M, Hibbett DS, Larsson KH, Larsson E, Langer E, Langer G. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) Systematics and Biodiversity. 3: 113-157. DOI: 10.1017/S1477200005001623  0.774
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446  0.825
2004 Wang Z, Binder M, Dai YC, Hibbett DS. Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and RNA polymerase sequences. Mycologia. 96: 1015-29. PMID 21148923 DOI: 10.2307/3762086  0.757
2004 Desjardin DE, Wang Z, Binder M, Hibbett DS. Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data. Mycologia. 96: 1010-4. PMID 21148922 DOI: 10.2307/3762085  0.818
2004 Hibbett DS. Trends in morphological evolution in homobasidiomycetes inferred using maximum likelihood: A comparison of binary and multistate approaches Systematic Biology. 53: 889-903. PMID 15764558 DOI: 10.1080/10635150490522610  0.356
2004 Wang Z, Binder M, Dai Y, Hibbett DS. Phylogenetic Relationships of Sparassis Inferred from Nuclear and Mitochondrial Ribosomal DNA and RNA Polymerase Sequences Mycologia. 96: 1015. DOI: 10.2307/3762086  0.643
2004 Egger KN, Hibbett DS. The evolutionary implications of exploitation in mycorrhizas 1 Canadian Journal of Botany. 82: 1110-1121. DOI: 10.1139/B04-056  0.321
2004 Wang Z, Binder M, Dai Y, Hibbett DS. Phylogenetic relationships ofSparassisinferred from nuclear and mitochondrial ribosomal DNA and RNA polymerase sequences Mycologia. 96: 1015-1029. DOI: 10.1080/15572536.2005.11832902  0.64
2004 Desjardin DE, Wang Z, Binder M, Hibbett DS. Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data Mycologia. 96: 1010-1014. DOI: 10.1080/15572536.2005.11832901  0.748
2003 Redberg GL, Hibbett DS, Ammirati JF, Rodriguez RJ. Phylogeny and genetic diversity of Bridgeoporus nobilissimus inferred using mitochondrial and nuclear rDNA sequences. Mycologia. 95: 836-45. PMID 21148991 DOI: 10.1080/15572536.2004.11833043  0.711
2003 Hibbett DS, Binder M, Wang Z, Goldman Y. Another fossil agaric from Dominican amber. Mycologia. 95: 685-7. PMID 21148976 DOI: 10.1080/15572536.2004.11833071  0.664
2002 Wang Z, Binder M, Hibbett DS. A new species of Cudonia based on morphological and molecular data. Mycologia. 94: 641-50. PMID 21156537 DOI: 10.1080/15572536.2003.11833192  0.74
2002 Hibbett DS, Binder M. Evolution of complex fruiting-body morphologies in homobasidiomycetes. Proceedings. Biological Sciences / the Royal Society. 269: 1963-9. PMID 12396494 DOI: 10.1098/Rspb.2002.2123  0.696
2002 Hibbett DS. When good relationships go bad. Nature. 419: 345-6. PMID 12353014 DOI: 10.1038/419345A  0.304
2002 Binder M, Hibbett DS. Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions. Molecular Phylogenetics and Evolution. 22: 76-90. PMID 11796031 DOI: 10.1006/Mpev.2001.1043  0.77
2002 Wu SH, Hibbett DS, Binderc M. Phylogenetic analyses of Aleurodiscus s.l. and allied genera Mycologia. 93: 720-731. DOI: 10.1080/00275514.2001.12063203  0.435
2002 Binder M, Hibbett DS, Molitoris HP. Phylogenetic relationships of the marine gasteromycete Nia vibrissa Mycologia. 93: 679-688. DOI: 10.1080/00275514.2001.12063199  0.719
2001 Hibbett DS, Donoghue MJ. Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Systematic Biology. 50: 215-42. PMID 12116929 DOI: 10.1080/10635150121079  0.577
2001 Hibbett DS, Binder M. Evolution of marine mushrooms. The Biological Bulletin. 201: 319-22. PMID 11751244 DOI: 10.2307/1543610  0.757
2001 Wu S, Hibbett DS, Binder M. Phylogenetic analyses of Aleurodiscus s.l. and allied genera Mycologia. 93: 720-731. DOI: 10.1080/00275514.2001.12063203  0.62
2001 Hibbett DS. Shiitake mushrooms and molecular clocks: Historical biogeography of Lentinula Journal of Biogeography. 28: 231-241. DOI: 10.1046/J.1365-2699.2001.00528.X  0.493
2000 Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology : Fg & B. 31: 21-32. PMID 11118132 DOI: 10.1006/Fgbi.2000.1228  0.47
2000 Hibbett DS, Gilbert LB, Donoghue MJ. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature. 407: 506-8. PMID 11029000 DOI: 10.1038/35035065  0.568
2000 Hughey BD, Adams GC, Bruns TD, Hibbett DS. Phylogeny of Calostoma, the gelatinous-stalked puffball, based on nuclear and mitochondrial ribosomal DNA sequences Mycologia. 92: 94-104. DOI: 10.1080/00275514.2000.12061133  0.462
1999 Hansen K, Pfister DH, Hibbett DS. Phylogenetic relationships among species of Phillipsia inferred from molecular and morphological data Mycologia. 91: 299-314. DOI: 10.2307/3761375  0.479
1999 Pine EM, Hibbett DS, Donoghue MJ. Phylogenetic relationships of cantharelloid and clavarioid homobasidiomycetes based on mitochondrial and nuclear rDNA sequences Mycologia. 91: 944-963. DOI: 10.1080/00275514.1999.12061105  0.66
1998 Hibbett DS, Donoghue MJ. Integrating phylogenetic analysis and classification in fungi Mycologia. 90: 347-356. DOI: 10.1080/00275514.1998.12026917  0.602
1998 Hibbett DS, Hansen K, Donoghue MJ. Phylogeny and biogeography of Lentinula inferred from an expanded rDNA dataset Mycological Research. 102: 1041-1049. DOI: 10.1017/S0953756297005996  0.627
1997 Hibbett DS, Pine EM, Langer E, Langer G, Donoghue MJ. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 94: 12002-6. PMID 9342352 DOI: 10.1073/Pnas.94.22.12002  0.65
1997 Hibbett DS, Donoghue MJ, Tomlinson PB. Is Phellinites digiustoi the oldest homobasidiomycete? American Journal of Botany. 84: 1005-1011. DOI: 10.2307/2446291  0.59
1997 Hibbett DS, Grimaldi D, Donoghue MJ. Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of homobasidiomycetes American Journal of Botany. 84: 981-991. DOI: 10.2307/2446289  0.577
1996 Hibbett DS. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Molecular Biology and Evolution. 13: 903-17. PMID 8751999 DOI: 10.1093/Oxfordjournals.Molbev.A025658  0.503
1996 Hibbett DS, Donoghue MJ. Implications of phylogenetic studies for conservation of genetic diversity in shiitake mushrooms | Implicaciones de estudios filogeneticos en la conservacion de la diversidad genetica de hongos shiitake Conservation Biology. 10: 1321-1327. DOI: 10.1046/J.1523-1739.1996.10051321.X  0.599
1995 Hibbett DS, Donoghue MJ. Progress toward a phylogenetic classification of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences Canadian Journal of Botany. 73: 853-861. DOI: 10.1139/B95-331  0.654
1995 Hibbett DS, Fukumasa-Nakai Y, Tsuneda A, Donoghue MJ. Phylogenetic diversity in shiitake inferred from nuclear ribosomal DNA sequences Mycologia. 87: 618-638. DOI: 10.1080/00275514.1995.12026578  0.595
1995 Hibbett DS, Grimaldi D, Donoghue MJ. Cretaceous mushrooms in amber Nature. 377: 487-487. DOI: 10.1038/377487A0  0.517
1994 Fukuda M, Nakai YF, Hibbett DS, Matsumoto T, Hayashi Y. Mitochondrial DNA restriction fragment length polymorphisms in natural populations of Lentinula edodes Mycological Research. 98: 169-175. DOI: 10.1016/S0953-7562(09)80181-0  0.344
1993 Hibbett DS, Vilgalys R. Phylogenetic Relationships of Lentinus (Basidiomycotina) Inferred from Molecular and Morphological Characters Systematic Botany. 18: 409. DOI: 10.2307/2419417  0.694
1993 Hibbett DS, Murakami S, Tsuneda A. Sporocarp ontogeny in Panus (Basidiomycotina): Evolution and classification American Journal of Botany. 80: 1336-1348. DOI: 10.1002/J.1537-2197.1993.Tb15373.X  0.324
1992 Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution. 1: 231-41. PMID 1342940 DOI: 10.1016/1055-7903(92)90020-H  0.661
1991 Hibbett DS, Vilgalys R. Evolutionary relationships of Lentinus to the Polyporaceae: evidence from restriction analysis of enzymatically amplified ribosomal DNA Mycologia. 83: 425-439. DOI: 10.1080/00275514.1991.12026032  0.678
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