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Jason C. Slot, Ph.D. - Publications

Affiliations: 
2013- Plant Pathology Ohio State University, Columbus, Columbus, OH 
Area:
fungal evolutionary genomics
Website:
u.osu.edu/slot.1
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63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Konkel Z, Kubatko L, Slot JC. CLOCI: unveiling cryptic fungal gene clusters with generalized detection. Nucleic Acids Research. PMID 39016185 DOI: 10.1093/nar/gkae625  0.44
2024 Roman-Reyna V, Sharma A, Toth H, Konkel Z, Omiotek N, Murthy S, Faith S, Slot J, Peduto Hand F, Goss EM, Jacobs JM. Live tracking of a plant pathogen outbreak reveals rapid and successive, multidecade plasmid reduction. Msystems. e0079523. PMID 38275768 DOI: 10.1128/msystems.00795-23  0.388
2023 Scott K, Konkel Z, Gluck-Thaler E, Valero David GE, Simmt CF, Grootmyers D, Chaverri P, Slot J. Endophyte genomes support greater metabolic gene cluster diversity compared with non-endophytes in Trichoderma. Plos One. 18: e0289280. PMID 38127903 DOI: 10.1371/journal.pone.0289280  0.857
2023 McTaggart AR, McLaughlin S, Slot JC, McKernan K, Appleyard C, Bartlett TL, Weinert M, Barlow C, Warne LN, Shuey LS, Drenth A, James TY. Domestication through clandestine cultivation constrained genetic diversity in magic mushrooms relative to naturalized populations. Current Biology : Cb. 33: 5147-5159.e7. PMID 38052161 DOI: 10.1016/j.cub.2023.10.059  0.316
2023 Miller DR, Jacobs JT, Rockefeller A, Singer H, Bollinger IM, Conway J, Slot JC, Cliffel DE. Cultivation, chemistry, and genome of . Biorxiv : the Preprint Server For Biology. PMID 37961470 DOI: 10.1101/2023.11.01.564784  0.354
2023 Sahu N, Indic B, Wong-Bajracharya J, Merényi Z, Ke HM, Ahrendt S, Monk TL, Kocsubé S, Drula E, Lipzen A, Bálint B, Henrissat B, Andreopoulos B, Martin FM, Bugge Harder C, ... ... Slot J, et al. Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nature Microbiology. PMID 37550506 DOI: 10.1038/s41564-023-01448-1  0.468
2023 Meyer M, Slot J. The Evolution and Ecology of Psilocybin in Nature. Fungal Genetics and Biology : Fg & B. 103812. PMID 37210028 DOI: 10.1016/j.fgb.2023.103812  0.303
2023 Sierra-Patev S, Min B, Naranjo-Ortiz M, Looney B, Konkel Z, Slot JC, Sakamoto Y, Steenwyk JL, Rokas A, Carro J, Camarero S, Ferreira P, Molpeceres G, Ruiz-Dueñas FJ, Serrano A, et al. A global phylogenomic analysis of the shiitake genus . Proceedings of the National Academy of Sciences of the United States of America. 120: e2214076120. PMID 36848567 DOI: 10.1073/pnas.2214076120  0.82
2022 McTaggart AR, James TY, Slot JC, Barlow C, Fechner N, Shuey LS, Drenth A. Genome sequencing progenies of magic mushrooms (Psilocybe subaeruginosa) identifies tetrapolar mating and gene duplications in the psilocybin pathway. Fungal Genetics and Biology : Fg & B. 103769. PMID 36587787 DOI: 10.1016/j.fgb.2022.103769  0.353
2022 Valero David GE, Emanuel IB, Konkel ZM, Martin D, Scott K, Slot J, Peduto Hand F. First Report of Causing Anthracnose of Snake Plant () in Ohio and its Draft Genome. Plant Disease. PMID 36581604 DOI: 10.1094/PDIS-10-22-2476-PDN  0.767
2022 Dunn MJ, Shazib SUA, Simonton E, Slot JC, Anderson MZ. Architectural Groups of a Subtelomeric Gene Family Evolve Along Distinct Paths in Candida albicans. G3 (Bethesda, Md.). PMID 36269198 DOI: 10.1093/g3journal/jkac283  0.429
2022 Emanuel IB, Konkel ZM, Scott KL, Valero David GE, Slot JC, Peduto Hand F. Whole-Genome Sequence Data for the Holotype Strain of Diaporthe ilicicola, a Fungus Associated with Latent Fruit Rot in Deciduous Holly. Microbiology Resource Announcements. e0063122. PMID 35993780 DOI: 10.1128/mra.00631-22  0.831
2022 Wang Z, Lopez-Giraldez F, Slot J, Yarden O, Trail F, Townsend JP. Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa. Msystems. e0023222. PMID 35638725 DOI: 10.1128/msystems.00232-22  0.369
2022 Gluck-Thaler E, Ralston T, Konkel Z, Ocampos CG, Ganeshan VD, Dorrance AE, Niblack TL, Wood CW, Slot JC, Lopez-Nicora HD, Vogan AA. Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes. Molecular Biology and Evolution. 39. PMID 35588244 DOI: 10.1093/molbev/msac109  0.817
2022 Merényi Z, Virágh M, Gluck-Thaler E, Slot JC, Kiss B, Varga T, Geösel A, Hegedüs B, Bálint B, Nagy LG. Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom forming fungi (Agaricomycetes). Elife. 11. PMID 35156613 DOI: 10.7554/eLife.71348  0.784
2021 Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, et al. Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. The New Phytologist. PMID 34797921 DOI: 10.1111/nph.17873  0.855
2021 Konkel Z, Scott K, Slot JC. Draft Genome Sequence of the Termite-Associated "Cuckoo Fungus," () sp. TMB Strain TB5. Microbiology Resource Announcements. 10. PMID 33414338 DOI: 10.1128/MRA.01230-20  0.762
2020 Valero-Jiménez CA, Steentjes MBF, Slot JC, Shi-Kunne X, Scholten OE, van Kan JAL. Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal Genus Botrytis. Genome Biology and Evolution. 12: 2491-2507. PMID 33283866 DOI: 10.1093/gbe/evaa218  0.515
2020 Gluck-Thaler E, Cerutti A, Perez-Quintero AL, Butchacas J, Roman-Reyna V, Madhavan VN, Shantharaj D, Merfa MV, Pesce C, Jauneau A, Vancheva T, Lang JM, Allen C, Verdier V, Gagnevin L, ... ... Slot JC, et al. Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Science Advances. 6. PMID 33188025 DOI: 10.1126/sciadv.abc4516  0.757
2020 Wang YW, Hess J, Slot JC, Pringle A. De novo gene birth, horizontal gene transfer and gene duplication as sources of new gene families associated with the origin of symbiosis in Amanita. Genome Biology and Evolution. PMID 32926145 DOI: 10.1093/Gbe/Evaa193  0.48
2020 Gluck-Thaler E, Haridas S, Binder M, Grigoriev IV, Crous PW, Spatafora JW, Bushley K, Slot JC. The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi. Molecular Biology and Evolution. PMID 32421770 DOI: 10.1093/Molbev/Msaa122  0.848
2020 Farinas C, Jourdan PS, Paul PA, Slot JC, Daughtrey M, Devi Ganeshan V, Baysal-Gurel F, Peduto Hand F. species show quantitative and qualitative resistance to a population of powdery mildew isolates from the eastern United States. Phytopathology. PMID 32252592 DOI: 10.1094/Phyto-12-19-0473-R  0.439
2020 Wolff PB, Nielsen ML, Slot JC, Andersen LN, Petersen LM, Isbrandt T, Holm DK, Mortensen UH, Nødvig CS, Larsen TO, Hoof JB. Acurin A, a novel hybrid compound, biosynthesized by individually translated PKS- and NRPS-encoding genes in Aspergillus aculeatus. Fungal Genetics and Biology : Fg & B. 103378. PMID 32234543 DOI: 10.1016/J.Fgb.2020.103378  0.5
2019 Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, De Fine Licht HH, Macias AM, Berger MC, Wickert KL, Stauder CM, Spahr EJ, et al. Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens. Fungal Ecology. 41: 147-164. PMID 31768192 DOI: 10.1016/J.Funeco.2019.06.002  0.784
2019 Farinas C, Gluck-Thaler E, Slot JC, Peduto Hand F. Whole-Genome Sequence of the Phlox Powdery Mildew Pathogen Golovinomyces magnicellulatus Strain FPH2017-1. Microbiology Resource Announcements. 8. PMID 31488536 DOI: 10.1128/MRA.00852-19  0.784
2019 Slot JC, Gluck-Thaler E. Metabolic gene clusters, fungal diversity, and the generation of accessory functions. Current Opinion in Genetics & Development. 58: 17-24. PMID 31466036 DOI: 10.1016/J.Gde.2019.07.006  0.826
2019 Armaleo D, Müller O, Lutzoni F, Andrésson ÓS, Blanc G, Bode HB, Collart FR, Dal Grande F, Dietrich F, Grigoriev IV, Joneson S, Kuo A, Larsen PE, Logsdon JM, Lopez D, ... ... Slot JC, et al. The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. Bmc Genomics. 20: 605. PMID 31337355 DOI: 10.1186/S12864-019-5629-X  0.406
2019 Olarte RA, Menke J, Zhang Y, Sullivan S, Slot JC, Huang Y, Badalamenti JP, Quandt AC, Spatafora JW, Bushley KE. Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum. Bmc Genomics. 20: 120. PMID 30732559 DOI: 10.1186/S12864-018-5399-X  0.582
2018 Gluck-Thaler E, Vijayakumar V, Slot JC. Fungal adaptation to plant defenses through convergent assembly of metabolic modules. Molecular Ecology. PMID 30427102 DOI: 10.1111/Mec.14943  0.833
2018 Reynolds HT, Vijayakumar V, Gluck-Thaler E, Korotkin HB, Matheny PB, Slot JC. Horizontal gene cluster transfer increased hallucinogenic mushroom diversity. Evolution Letters. 2: 88-101. PMID 30283667 DOI: 10.1002/evl3.42  0.825
2018 Blei F, Fricke J, Wick J, Slot J, Hoffmeister D. Iterative L-tryptophan methylation in Psilocybe evolved by sub-domain duplication. Chembiochem : a European Journal of Chemical Biology. PMID 30098085 DOI: 10.1002/Cbic.201800336  0.407
2018 Gluck-Thaler E, Slot JC. Specialized plant biochemistry drives gene clustering in fungi. The Isme Journal. PMID 29463891 DOI: 10.1038/S41396-018-0075-3  0.839
2018 Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, et al. Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology & Evolution. PMID 29426895 DOI: 10.1038/S41559-018-0469-7  0.414
2017 Slot JC. Fungal Gene Cluster Diversity and Evolution. Advances in Genetics. 100: 141-178. PMID 29153399 DOI: 10.1016/Bs.Adgen.2017.09.005  0.597
2017 Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, et al. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology & Evolution. PMID 29085064 DOI: 10.1038/S41559-017-0347-8  0.533
2017 Nagy LG, Tóth R, Kiss E, Slot J, Gácser A, Kovács GM. Six Key Traits of Fungi: Their Evolutionary Origins and Genetic Bases. Microbiology Spectrum. 5. PMID 28820115 DOI: 10.1128/Microbiolspec.Funk-0036-2016  0.49
2017 Reynolds H, Slot JC, Divon HH, Lysøe E, Proctor RH, Brown DW. Differential retention of gene functions in a secondary metabolite cluster. Molecular Biology and Evolution. PMID 28460114 DOI: 10.1093/Molbev/Msx145  0.817
2016 Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, ... ... Slot JC, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113  0.836
2016 Staehlin BM, Gibbons JG, Rokas A, O'Halloran TV, Slot JC. Evolution of a heavy metal homeostasis/resistance island reflects increasing copper stress in Enterobacteria. Genome Biology and Evolution. PMID 26893455 DOI: 10.1093/Gbe/Evw031  0.76
2016 Reynolds HT, Barton HA, Slot JC. Phylogenomic analysis supports a recent change in nitrate assimilation in the White-nose Syndrome pathogen, Pseudogymnoascus destructans Fungal Ecology. 23: 20-29. DOI: 10.1016/J.Funeco.2016.04.010  0.773
2015 Gluck-Thaler E, Slot JC. Dimensions of Horizontal Gene Transfer in Eukaryotic Microbial Pathogens. Plos Pathogens. 11: e1005156. PMID 26513155 DOI: 10.1371/Journal.Ppat.1005156  0.822
2015 Wisecaver JH, Slot JC, Rokas A. Correction: The Evolution of Fungal Metabolic Pathways. Plos Genetics. 11: e1005449. PMID 26378934 DOI: 10.1371/Journal.Pgen.1005449  0.774
2015 Elmore MH, McGary KL, Wisecaver JH, Slot JC, Geiser DM, Sink S, O'Donnell K, Rokas A. Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages. Genome Biology and Evolution. 7: 789-800. PMID 25663439 DOI: 10.1093/Gbe/Evv025  0.84
2014 Wisecaver JH, Slot JC, Rokas A. The evolution of fungal metabolic pathways. Plos Genetics. 10: e1004816. PMID 25474404 DOI: 10.1371/Journal.Pgen.1004816  0.849
2014 Greene GH, McGary KL, Rokas A, Slot JC. Ecology drives the distribution of specialized tyrosine metabolism modules in fungi. Genome Biology and Evolution. 6: 121-32. PMID 24391152 DOI: 10.1093/Gbe/Evt208  0.85
2013 Campbell MA, Staats M, van Kan JA, Rokas A, Slot JC. Repeated loss of an anciently horizontally transferred gene cluster in Botrytis. Mycologia. 105: 1126-34. PMID 23921237 DOI: 10.3852/12-390  0.787
2013 McGary KL, Slot JC, Rokas A. Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds. Proceedings of the National Academy of Sciences of the United States of America. 110: 11481-6. PMID 23798424 DOI: 10.1073/Pnas.1304461110  0.83
2013 Bradshaw RE, Slot JC, Moore GG, Chettri P, de Wit PJ, Ehrlich KC, Ganley AR, Olson MA, Rokas A, Carbone I, Cox MP. Fragmentation of an aflatoxin-like gene cluster in a forest pathogen. The New Phytologist. 198: 525-35. PMID 23448391 DOI: 10.1111/Nph.12161  0.782
2012 Zhang H, Rokas A, Slot JC. Two different secondary metabolism gene clusters occupied the same ancestral locus in fungal dermatophytes of the arthrodermataceae. Plos One. 7: e41903. PMID 22860027 DOI: 10.1371/Journal.Pone.0041903  0.802
2012 Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A. The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Current Biology : Cb. 22: 1403-9. PMID 22795693 DOI: 10.1016/J.Cub.2012.05.033  0.791
2012 League GP, Slot JC, Rokas A. The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces. Fems Yeast Research. 12: 859-63. PMID 22776361 DOI: 10.1111/J.1567-1364.2012.00828.X  0.744
2012 Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, ... ... Slot JC, et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science (New York, N.Y.). 336: 1715-9. PMID 22745431 DOI: 10.1126/Science.1221748  0.794
2012 Stergiopoulos I, Kourmpetis YA, Slot JC, Bakker FT, De Wit PJ, Rokas A. In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins. Molecular Biology and Evolution. 29: 3371-84. PMID 22628532 DOI: 10.1093/Molbev/Mss143  0.833
2012 Campbell MA, Rokas A, Slot JC. Horizontal transfer and death of a fungal secondary metabolic gene cluster. Genome Biology and Evolution. 4: 289-93. PMID 22294497 DOI: 10.1093/Gbe/Evs011  0.765
2011 Slot JC, Rokas A. Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Current Biology : Cb. 21: 134-9. PMID 21194949 DOI: 10.1016/J.Cub.2010.12.020  0.757
2010 Slot JC, Rokas A. Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Proceedings of the National Academy of Sciences of the United States of America. 107: 10136-41. PMID 20479238 DOI: 10.1073/Pnas.0914418107  0.78
2010 Slot JC, Hallstrom KN, Matheny PB, Hosaka K, Mueller G, Robertson DL, Hibbett DS. Phylogenetic, structural and functional diversification of nitrate transporters in three ecologically diverse clades of mushroom-forming fungi Fungal Ecology. 3: 160-177. DOI: 10.1016/J.Funeco.2009.10.001  0.728
2007 Slot JC, Hibbett DS. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study. Plos One. 2: e1097. PMID 17971860 DOI: 10.1371/Journal.Pone.0001097  0.709
2007 Slot JC, Hallstrom KN, Matheny PB, Hibbett DS. Diversification of NRT2 and the origin of its fungal homolog. Molecular Biology and Evolution. 24: 1731-43. PMID 17513882 DOI: 10.1093/Molbev/Msm098  0.756
2007 Matheny PB, Wang Z, Binder M, Curtis JM, Lim YW, Nilsson RH, Hughes KW, Hofstetter V, Ammirati JF, Schoch CL, Langer E, Langer G, McLaughlin DJ, Wilson AW, Frøslev T, ... ... Slot JC, et al. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Molecular Phylogenetics and Evolution. 43: 430-51. PMID 17081773 DOI: 10.1016/J.Ympev.2006.08.024  0.821
2006 Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, et al. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia. 98: 982-95. PMID 17486974 DOI: 10.3852/Mycologia.98.6.982  0.788
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... ... Slot JC, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  0.815
2005 Yang ZL, Matheny PB, Ge ZW, Slot JC, Hibbett DS. New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycological Research. 109: 1259-67. PMID 16279419 DOI: 10.1017/S0953756205003758  0.724
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