Michael S. Barker, Ph.D. - Publications

Affiliations: 
Ecology & Evolutionary Biology University of Arizona, Tucson, AZ 
Area:
Plant evolutionary genomics
Website:
http://barkerlab.net

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications. 10: 2878. PMID 31253789 DOI: 10.1038/s41467-019-10757-1  0.4
2019 Li Z, Tiley GP, Rundell RJ, Barker MS. Reply to Nakatani and McLysaght: Analyzing deep duplication events. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674658 DOI: 10.1073/pnas.1819227116  1
2018 Tiley GP, Barker MS, Burleigh JG. Assessing the performance of Ks plots for detecting ancient whole genome duplications. Genome Biology and Evolution. PMID 30239709 DOI: 10.1093/gbe/evy200  0.8
2018 Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, et al. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants. PMID 29967517 DOI: 10.1038/s41477-018-0188-8  1
2018 Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS. Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany. PMID 29719043 DOI: 10.1002/ajb2.1060  1
2018 Li Z, Tiley GP, Galuska SR, Reardon CR, Kidder TI, Rundell RJ, Barker MS. Multiple large-scale gene and genome duplications during the evolution of hexapods. Proceedings of the National Academy of Sciences of the United States of America. PMID 29674453 DOI: 10.1073/pnas.1710791115  1
2017 Qi X, An H, Ragsdale A, Hall TE, Gutenkunst RN, Pires JC, Barker MS. Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Molecular Ecology. PMID 28371014 DOI: 10.1111/mec.14131  0.4
2017 Mandáková T, Li Z, Barker MS, Lysak MA. Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention. The Plant Journal : For Cell and Molecular Biology. PMID 28370611 DOI: 10.1111/tpj.13553  1
2016 Barker MS, Husband BC, Pires JC. Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study. American Journal of Botany. PMID 27480249 DOI: 10.3732/ajb.1600272  1
2016 Barker MS, Li Z, Kidder TI, Reardon CR, Lai Z, Oliveira LO, Scascitelli M, Rieseberg LH. Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae. American Journal of Botany. PMID 27313199 DOI: 10.3732/ajb.1600113  1
2016 Arrigo N, de La Harpe M, Litsios G, Zozomová-Lihová J, Španiel S, Marhold K, Barker MS, Alvarez N. Is hybridization driving the evolution of climatic niche in Alyssum montanum. American Journal of Botany. PMID 27206461 DOI: 10.3732/ajb.1500368  1
2016 Baniaga AE, Arrigo N, Barker MS. The small nuclear genomes of Selaginella are associated with a low rate of genome size evolution. Genome Biology and Evolution. PMID 27189987 DOI: 10.1093/gbe/evw091  1
2015 Li Z, Baniaga AE, Sessa EB, Scascitelli M, Graham SW, Rieseberg LH, Barker MS. Early genome duplications in conifers and other seed plants. Science Advances. 1: e1501084. PMID 26702445 DOI: 10.1126/sciadv.1501084  1
2015 Marques I, Montgomery SA, Barker MS, Macfarlane TD, Conran JG, Catalán P, Rieseberg LH, Rudall PJ, Graham SW. Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales). The New Phytologist. PMID 26612464 DOI: 10.1111/nph.13755  1
2015 Barker MS, Arrigo N, Baniaga AE, Li Z, Levin DA. On the relative abundance of autopolyploids and allopolyploids. The New Phytologist. PMID 26439879 DOI: 10.1111/nph.13698  1
2015 Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, ... ... Barker MS, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/pnas.1503926112  1
2015 Mayrose I, Zhan SH, Rothfels CJ, Arrigo N, Barker MS, Rieseberg LH, Otto SP. Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014). The New Phytologist. 206: 27-35. PMID 25472785 DOI: 10.1111/nph.13192  1
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  1
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/pnas.1323926111  1
2014 Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, et al. Between two fern genomes. Gigascience. 3: 15. PMID 25324969 DOI: 10.1186/2047-217X-3-15  1
2014 Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Molecular Ecology Resources. 14: 166-77. PMID 24103297 DOI: 10.1111/1755-0998.12163  1
2014 Barker MS, Baute GJ, Liu SL. Duplications and turnover in plant genomes Plant Genome Diversity. 1: 155-169. DOI: 10.1007/978-3-7091-1130-7_11  1
2013 Arrigo N, Therrien J, Anderson CL, Windham MD, Haufler CH, Barker MS. A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys. American Journal of Botany. 100: 1672-82. PMID 23935110 DOI: 10.3732/ajb.1200426  1
2012 Bowers JE, Nambeesan S, Corbi J, Barker MS, Rieseberg LH, Knapp SJ, Burke JM. Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms. Plos One. 7: e51360. PMID 23284684 DOI: 10.1371/journal.pone.0051360  1
2012 Arrigo N, Albert LP, Mickelson PG, Barker MS. Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package. Molecular Ecology Resources. 12: 1177-9. PMID 22994899 DOI: 10.1111/1755-0998.12012  1
2012 Arrigo N, Barker MS. Rarely successful polyploids and their legacy in plant genomes. Current Opinion in Plant Biology. 15: 140-6. PMID 22480430 DOI: 10.1016/j.pbi.2012.03.010  1
2012 Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, et al. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany. 99: 209-18. PMID 22058181 DOI: 10.3732/ajb.1100313  1
2012 Barker MS. Karyotype and genome evolution in pteridophytes Plant Genome Diversity. 2: 245-253. DOI: 10.1007/978-3-7091-1160-4_15  1
2011 Mayrose I, Zhan SH, Rothfels CJ, Magnuson-Ford K, Barker MS, Rieseberg LH, Otto SP. Recently formed polyploid plants diversify at lower rates. Science (New York, N.Y.). 333: 1257. PMID 21852456 DOI: 10.1126/science.1207205  1
2011 Kane NC, Barker MS, Zhan SH, Rieseberg LH. Molecular evolution across the Asteraceae: micro- and macroevolutionary processes. Molecular Biology and Evolution. 28: 3225-35. PMID 21693439 DOI: 10.1093/molbev/msr166  1
2011 Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (New York, N.Y.). 332: 960-3. PMID 21551031 DOI: 10.1126/science.1203810  1
2011 Der JP, Barker MS, Wickett NJ, dePamphilis CW, Wolf PG. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. Bmc Genomics. 12: 99. PMID 21303537 DOI: 10.1186/1471-2164-12-99  1
2010 Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, Lai Z, Stewart ML, Bekele E, Engels JM, Cronk QC, Rieseberg LH. Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome. Molecular Ecology Resources. 10: 1048-58. PMID 21565115 DOI: 10.1111/j.1755-0998.2010.02859.x  1
2010 Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH. EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics. Evolutionary Bioinformatics Online. 6: 143-9. PMID 21079755 DOI: 10.4137/EBO.S5861  1
2010 Dlugosch KM, Barker MS, Rieseberg LH. NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform. Bmc Research Notes. 3: 217. PMID 20678216 DOI: 10.1186/1756-0500-3-217  1
2010 Shi T, Huang H, Barker MS. Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales. Annals of Botany. 106: 497-504. PMID 20576738 DOI: 10.1093/aob/mcq129  1
2010 Mayrose I, Barker MS, Otto SP. Probabilistic models of chromosome number evolution and the inference of polyploidy. Systematic Biology. 59: 132-44. PMID 20525626 DOI: 10.1093/sysbio/syp083  1
2010 Barker MS, Wolf PG. Unfurling fern biology in the genomics age Bioscience. 60: 177-185. DOI: 10.1525/bio.2010.60.3.4  1
2009 Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH. The frequency of polyploid speciation in vascular plants. Proceedings of the National Academy of Sciences of the United States of America. 106: 13875-9. PMID 19667210 DOI: 10.1073/pnas.0811575106  1
2009 Kane NC, King MG, Barker MS, Raduski A, Karrenberg S, Yatabe Y, Knapp SJ, Rieseberg LH. Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species. Evolution; International Journal of Organic Evolution. 63: 2061-75. PMID 19473382 DOI: 10.1111/j.1558-5646.2009.00703.x  1
2009 Barker MS, Dlugosch KM, Reddy AC, Amyotte SN, Rieseberg LH. SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses. Bioinformatics (Oxford, England). 25: 535-6. PMID 19129211 DOI: 10.1093/bioinformatics/btp011  1
2008 Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Molecular Biology and Evolution. 25: 2445-55. PMID 18728074 DOI: 10.1093/molbev/msn187  1
2008 Shaw SW, Sprunt SV, Barker MS. Contribution to the Pteridophyte flora of Puerto Rico American Fern Journal. 98: 107-111. DOI: 10.1640/0002-8444(2008)98[107:CTTPFO]2.0.CO;2  1
2008 Nakazato T, Barker MS, Rieseberg LH, Gastony GJ. Evolution of the nuclear genome of ferns and lycophytes Biology and Evolution of Ferns and Lycophytes. 175-198. DOI: 10.1017/CBO9780511541827.008  1
2007 Brandvain Y, Barker MS, Wade MJ. Gene co-inheritance and gene transfer. Science (New York, N.Y.). 315: 1685. PMID 17379800 DOI: 10.1126/science.1134789  1
2006 Barker MS, Hickey RJ. A taxonomic revision of Caribbean Adiantopsis (Pteridaceae) Annals of the Missouri Botanical Garden. 93: 371-401. DOI: 10.3417/0026-6493(2007)93[371:ATROCA]2.0.CO;2  1
2005 Barker MS, Demuth JP, Wade MJ. Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid. Plos Genetics. 1: e57. PMID 16299585 DOI: 10.1371/journal.pgen.0010057  1
2005 Barker MS, Demuith JP, Wade MJ. Maternai expression constraint on innovation of the anterior determinant, bicoid Plos Genetics. 1: 527-530. DOI: 10.1371 /joumal.pgen.0010057  1
2005 Barker MS, Shaw SW, Hickey RJ, Rawlins JE, Fetzner JW. Lepidopteran soral crypsis on Caribbean ferns Biotropica. 37: 314-316. DOI: 10.1111/j.1744-7429.2005.00040.x  1
2004 Shaw SW, Barker MS, Hickey RJ. New records for Puerto Rican pteridophytes Fern Gazette. 17: 97-99.  1
2003 Hauk WD, Barker MS. Botrychium lanceolatum subsp. angustisegmentum in Ohio American Fern Journal. 93: 93-94.  1
2003 Hickey RJ, Barker MS, Ponce M. An Adiantopsis hybrid from Northeastern Argentina and vicinity American Fern Journal. 93: 42-44.  1
2003 Barker MS, Hauk WD. An evaluation of Sceptridium dissectum (Ophioglossaceae) with ISSR markers: Implications for Sceptridium systematics American Fern Journal. 93: 1-19.  1
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