Douglas E. Soltis, Ph.D. - Publications

Botany University of Florida, Gainesville, Gainesville, FL, United States 

272 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Jantzen JR, Whitten WM, Neubig KM, Majure LC, Soltis DE, Soltis PS. Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics. Ecology and Evolution. 9: 9479-9499. PMID 31534670 DOI: 10.1002/ece3.5425  1
2019 Dong Y, Chen S, Cheng S, Zhou W, Ma Q, Chen Z, Fu CX, Liu X, Zhao YP, Soltis PS, Wong GK, Soltis DE, Xiang J. Natural selection and repeated patterns of molecular evolution following allopatric divergence. Elife. 8. PMID 31373555 DOI: 10.7554/eLife.45199  1
2019 Li D, Trotta L, Marx HE, Allen JM, Sun M, Soltis DE, Soltis PS, Guralnick RP, Baiser B. For common community phylogenetic analyses, go ahead and use synthesis phylogenies. Ecology. e02788. PMID 31225900 DOI: 10.1002/ecy.2788  1
2019 Folk RA, Stubbs RL, Mort ME, Cellinese N, Allen JM, Soltis PS, Soltis DE, Guralnick RP. Rates of niche and phenotype evolution lag behind diversification in a temperate radiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31085636 DOI: 10.1073/pnas.1817999116  1
2019 Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, ... ... Soltis DE, et al. Origin of angiosperms and the puzzle of the Jurassic gap. Nature Plants. PMID 31061536 DOI: 10.1038/s41477-019-0421-0  1
2019 Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, ... ... Soltis DE, et al. Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land. Proceedings of the National Academy of Sciences of the United States of America. PMID 30804180 DOI: 10.1073/pnas.1812092116  1
2019 Lin HY, Hao YJ, Li JH, Fu CX, Soltis PS, Soltis DE, Zhao YP. Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae). Molecular Phylogenetics and Evolution. PMID 30802596 DOI: 10.1016/j.ympev.2019.02.018  1
2019 Visger CJ, Wong GK, Zhang Y, Soltis PS, Soltis DE. Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass. American Journal of Botany. PMID 30779448 DOI: 10.1002/ajb2.1239  1
2019 Yao G, Jin JJ, Li HT, Yang JB, Shiva Mandala V, Croley M, Mostow R, Douglas NA, Chase MW, Christenhusz MJM, Soltis DE, Soltis PS, Smith SA, Brockington SF, Moore MJ, et al. Plastid phylogenomic insights into the evolution of Caryophyllales. Molecular Phylogenetics and Evolution. PMID 30735725 DOI: 10.1016/j.ympev.2018.12.023  1
2019 Zhao D, Hamilton JP, Bhat WW, Johnson SR, Godden GT, Kinser TJ, Boachon B, Dudareva N, Soltis DE, Soltis PS, Hamberger B, Buell CR. A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways. Gigascience. PMID 30698701 DOI: 10.1093/gigascience/giz005  1
2019 Soltis DE, Soltis PS. Nuclear genomes of two magnoliids. Nature Plants. 5: 6-7. PMID 30626927 DOI: 10.1038/s41477-018-0344-1  1
2018 Allen JM, Folk RA, Soltis PS, Soltis DE, Guralnick RP. Biodiversity synthesis across the green branches of the tree of life. Nature Plants. PMID 30598535 DOI: 10.1038/s41477-018-0322-7  1
2018 Allen JM, Germain-Aubrey CC, Barve N, Neubig KM, Majure LC, Laffan SW, Mishler BD, Owens HL, Smith SA, Whitten WM, Abbott JR, Soltis DE, Guralnick R, Soltis PS. Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates. Iscience. 11: 57-70. PMID 30590251 DOI: 10.1016/j.isci.2018.12.002  1
2018 Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, Leebens-Mack JH, Leitch IJ, Maurin O, Soltis DE, Soltis PS, et al. A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering. Systematic Biology. PMID 30535394 DOI: 10.1093/sysbio/syy086  1
2018 Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H. Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. The Isme Journal. PMID 30353037 DOI: 10.1038/s41396-018-0303-x  1
2018 Hodel RGJ, Knowles LL, McDaniel SF, Payton AC, Dunaway JF, Soltis PS, Soltis DE. Terrestrial species adapted to sea dispersal: differences in propagule dispersal of two Caribbean mangroves. Molecular Ecology. PMID 30308703 DOI: 10.1111/mec.14894  1
2018 Wang Y, Jiang W, Ye W, Fu C, Gitzendanner MA, Soltis PS, Soltis DE, Qiu Y. Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum. Bmc Plant Biology. 18: 208. PMID 30249188 DOI: 10.1186/s12870-018-1429-8  1
2018 Gaynor ML, Marchant DB, Soltis DE, Soltis PS. Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata. American Journal of Botany. PMID 30239980 DOI: 10.1002/ajb2.1161  1
2018 Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB. A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. Genetics. PMID 30213855 DOI: 10.1534/genetics.118.301564  1
2018 Shan S, Mavrodiev EV, Li R, Zhang Z, Hauser BA, Soltis PS, Soltis DE, Yang B. Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy. Molecular Ecology Resources. PMID 30086204 DOI: 10.1111/1755-0998.12935  1
2018 Stubbs RL, Soltis DE, Cellinese N. The future of cold-adapted plants in changing climates: (Saxifragaceae) as a case study. Ecology and Evolution. 8: 7164-7177. PMID 30073075 DOI: 10.1002/ece3.4242  0.72
2018 Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP. Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms. The American Naturalist. 192: 171-187. PMID 30016161 DOI: 10.1086/698120  1
2018 Landis JB, Bell CD, Hernandez M, Zenil-Ferguson R, McCarthy EW, Soltis DE, Soltis PS. Evolution of Floral Traits and Impact of Reproductive Mode on Diversification in the Phlox Family (Polemoniaceae). Molecular Phylogenetics and Evolution. PMID 29958983 DOI: 10.1016/j.ympev.2018.06.035  1
2018 Hu GX, Takano A, Drew BT, Liu ED, Soltis DE, Soltis PS, Peng H, Xiang CL. Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia. Annals of Botany. PMID 29945172 DOI: 10.1093/aob/mcy104  1
2018 Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS. Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany. PMID 29719043 DOI: 10.1002/ajb2.1060  1
2018 Soltis DE, Moore MJ, Sessa EB, Smith SA, Soltis PS. Using and navigating the plant tree of life. American Journal of Botany. PMID 29702724 DOI: 10.1002/ajb2.1071  1
2018 Hodel RG, Chandler LM, Fahrenkrog AM, Kirst M, Gitzendanner MA, Soltis DE, Soltis PS. Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella. Current Opinion in Plant Biology. 42: 81-89. PMID 29694936 DOI: 10.1016/j.pbi.2018.04.003  1
2018 Folk RA, Soltis PS, Soltis DE, Guralnick R. New prospects in the detection and comparative analysis of hybridization in the tree of life. American Journal of Botany. PMID 29683488 DOI: 10.1002/ajb2.1018  1
2018 Folk RA, Sun M, Soltis PS, Smith SA, Soltis DE, Guralnick RP. Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids. American Journal of Botany. PMID 29665035 DOI: 10.1002/ajb2.1059  1
2018 Stull GW, Schori M, Soltis DE, Soltis PS. Character evolution and missing (morphological) data across Asteridae. American Journal of Botany. PMID 29656519 DOI: 10.1002/ajb2.1050  1
2018 Liu L, Wang Y, He P, Li P, Lee J, Soltis DE, Fu C. Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data. Bmc Genomics. 19: 235. PMID 29618324 DOI: 10.1186/s12864-018-4633-x  0.68
2018 Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/gigascience/giy013  1
2018 Gitzendanner MA, Soltis PS, Wong GK, Ruhfel BR, Soltis DE. Plastid phylogenomic analysis of green plants: A billion years of evolutionary history. American Journal of Botany. PMID 29603143 DOI: 10.1002/ajb2.1048  1
2018 Stubbs RL, Folk RA, Xiang CL, Soltis DE, Cellinese N. Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage. Molecular Phylogenetics and Evolution. 123: 88-100. PMID 29496541 DOI: 10.1016/j.ympev.2018.02.016  0.72
2018 Lu LM, Mao LF, Yang T, Ye JF, Liu B, Li HL, Sun M, Miller JT, Mathews S, Hu HH, Niu YT, Peng DX, Chen YH, Smith SA, Chen M, ... ... Soltis DE, et al. Evolutionary history of the angiosperm flora of China. Nature. 554: 234-238. PMID 29420476 DOI: 10.1038/nature25485  1
2017 Spoelhof JP, Chester M, Rodriguez R, Geraci B, Heo K, Mavrodiev E, Soltis PS, Soltis DE. Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus. American Journal of Botany. 104: 1484-1492. PMID 29885228 DOI: 10.3732/ajb.1700180  1
2017 Hodel RGJ, Chen S, Payton AC, McDaniel SF, Soltis P, Soltis DE. Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering. Scientific Reports. 7: 17598. PMID 29242627 DOI: 10.1038/s41598-017-16810-7  0.64
2017 Molgo IE, Soltis DE, Soltis PS. Cytogeography of Callisia section Cuthbertia (Commelinaceae). Comparative Cytogenetics. 11: 553-577. PMID 29114354 DOI: 10.3897/CompCytogen.v11i4.11984  1
2017 Yu XQ, Gao LM, Soltis DE, Soltis PS, Yang JB, Fang L, Yang SX, Li DZ. Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family. The New Phytologist. 215: 1235-1248. PMID 28695680 DOI: 10.1111/nph.14683  1
2017 Landis JB, Soltis DE, Soltis PS. Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). Bmc Genomics. 18: 475. PMID 28645249 DOI: 10.1186/s12864-017-3868-2  1
2017 Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis D, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, et al. Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes. Plant Physiology. PMID 28446636 DOI: 10.1104/pp.17.00295  0.72
2017 García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Souza de Oliveira R, Soltis DE, Soltis PS. Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution. PMID 28390909 DOI: 10.1016/j.ympev.2017.04.003  1
2017 Liu X, Mei W, Soltis PS, Soltis DE, Barbazuk WB. Detecting Alternatively Spliced Transcript Isoforms from Single-Molecule Long-Read Sequences without a Reference Genome. Molecular Ecology Resources. PMID 28316149 DOI: 10.1111/1755-0998.12670  1
2017 Kates HR, Soltis PS, Soltis DE. Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci. Molecular Phylogenetics and Evolution. PMID 28288944 DOI: 10.1016/j.ympev.2017.03.002  1
2017 Cai S, Chen G, Wang Y, Huang Y, Marchant B, Wang Y, Yang Q, Dai F, Hills A, Franks PJ, Nevo E, Soltis D, Soltis P, Sessa E, Wolf PG, et al. Evolutionary Conservation of ABA Signaling for Stomatal Closure in Ferns. Plant Physiology. PMID 28232585 DOI: 10.1104/pp.16.01848  0.68
2017 Yu Y, Xiang Q, Manos PS, Soltis DE, Soltis PS, Song BH, Cheng S, Liu X, Wong G. Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences. Plos One. 12: e0171361. PMID 28225773 DOI: 10.1371/journal.pone.0171361  1
2017 Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS. Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. The New Phytologist. PMID 28186635 DOI: 10.1111/nph.14461  0.64
2017 Chanderbali AS, Berger BA, Howarth DG, Soltis DE, Soltis PS. Evolution of floral diversity: genomics, genes and gamma. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994132 DOI: 10.1098/rstb.2015.0509  1
2016 Soltis DE, Soltis PS. Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity. Plant Diversity. 38: 264-270. PMID 30159477 DOI: 10.1016/j.pld.2016.12.001  1
2016 de Casas RR, Mort ME, Soltis DE. The influence of habitat on the evolution of plants: a case study across Saxifragales. Annals of Botany. PMID 27551029 DOI: 10.1093/aob/mcw160  0.68
2016 Fan D, Hu W, Li B, Morris AB, Zheng M, Soltis DE, Soltis PS, Zhang Z. Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes. Scientific Reports. 6: 31044. PMID 27534981 DOI: 10.1038/srep31044  0.6
2016 Visger CJ, Germain-Aubrey CC, Patel M, Sessa EB, Soltis PS, Soltis DE. Niche divergence between diploid and autotetraploid Tolmiea. American Journal of Botany. PMID 27507838 DOI: 10.3732/ajb.1600130  1
2016 Blaine Marchant D, Soltis DE, Soltis PS. Patterns of abiotic niche shifts in allopolyploids relative to their progenitors. The New Phytologist. PMID 27399976 DOI: 10.1111/nph.14069  1
2016 Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS. The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century. Applications in Plant Sciences. 4. PMID 27347456 DOI: 10.3732/apps.1600025  1
2016 Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS. A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes. Applications in Plant Sciences. 4. PMID 27347455 DOI: 10.3732/apps.1600024  1
2016 Soltis DE, Visger CJ, Marchant DB, Soltis PS. Polyploidy: Pitfalls and paths to a paradigm. American Journal of Botany. PMID 27234228 DOI: 10.3732/ajb.1500501  1
2016 Soltis PS, Soltis DE. Ancient WGD events as drivers of key innovations in angiosperms. Current Opinion in Plant Biology. 30: 159-165. PMID 27064530 DOI: 10.1016/j.pbi.2016.03.015  1
2016 Hodel RG, de Souza Cortez MB, Soltis PS, Soltis DE. Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants. American Journal of Botany. PMID 27056925 DOI: 10.3732/ajb.1500260  1
2016 Chanderbali AS, Berger BA, Howarth DG, Soltis PS, Soltis DE. Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era. Genetics. 202: 1255-65. PMID 27053123 DOI: 10.1534/genetics.115.182964  1
2016 Soltis DE, Misra BB, Shan S, Chen S, Soltis PS. Polyploidy and the proteome. Biochimica Et Biophysica Acta. PMID 26993527 DOI: 10.1016/j.bbapap.2016.03.010  1
2016 Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA. Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae). Applications in Plant Sciences. 4. PMID 26949579 DOI: 10.3732/apps.1500115  1
2016 Kou Y, Cheng S, Tian S, Li B, Fan D, Chen Y, Soltis DE, Soltis PS, Zhang Z. The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene Journal of Biogeography. 43: 351-360. DOI: 10.1111/jbi.12635  1
2016 Soltis DE. Floral flexibility: Diversification of the flower Nature Plants. 2. DOI: 10.1038/nplants.2015.211  1
2015 Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS. The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. Frontiers in Plant Science. 6: 1144. PMID 26779209 DOI: 10.3389/fpls.2015.01144  1
2015 Sun Y, Moore MJ, Zhang S, Soltis PS, Soltis DE, Zhao T, Meng A, Li X, Li J, Wang H. Phylogenomic and structural analyses of 18 complete plastomes across all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution. Molecular Phylogenetics and Evolution. PMID 26724406 DOI: 10.1016/j.ympev.2015.12.006  1
2015 Matyášek R, Dobešová E, Húska D, Ježková I, Soltis PS, Soltis DE, Kovařík A. Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus. The Plant Journal : For Cell and Molecular Biology. PMID 26711705 DOI: 10.1111/tpj.13110  1
2015 Soltis PS, Marchant DB, Van de Peer Y, Soltis DE. Polyploidy and genome evolution in plants. Current Opinion in Genetics & Development. 35: 119-125. PMID 26656231 DOI: 10.1016/j.gde.2015.11.003  1
2015 Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA. Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids. Plos One. 10: e0144339. PMID 26646761 DOI: 10.1371/journal.pone.0144339  1
2015 Stull GW, Duno de Stefano R, Soltis DE, Soltis PS. Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set. American Journal of Botany. PMID 26507112 DOI: 10.3732/ajb.1500298  1
2015 Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW. Peptidomics of circular cysteine-rich plant peptides - Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining. Journal of Proteome Research. PMID 26399495 DOI: 10.1021/acs.jproteome.5b00681  1
2015 Li HL, Wang W, Mortimer PE, Li RQ, Li DZ, Hyde KD, Xu JC, Soltis DE, Chen ZD. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Scientific Reports. 5: 14023. PMID 26354898 DOI: 10.1038/srep14023  1
2015 Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP. An Exploration into Fern Genome Space. Genome Biology and Evolution. 7: 2533-44. PMID 26311176 DOI: 10.1093/gbe/evv163  1
2015 Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, et al. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany. 102: 1089-107. PMID 26199366 DOI: 10.3732/ajb.1500089  1
2015 Matthews A, Emelianova K, Hatimy AA, Chester M, Pellicer J, Ahmad KS, Guignard MS, Rouhan G, Soltis DE, Soltis PS, Leitch IJ, Leitch AR, Mavrodiev EV, Buggs RJ. 250 years of hybridization between two biennial herb species without speciation. Aob Plants. 7. PMID 26187604 DOI: 10.1093/aobpla/plv081  1
2015 Servick S, Visger CJ, Gitzendanner MA, Soltis PS, Soltis DE. Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata. American Journal of Botany. 102: 973-82. PMID 26101421 DOI: 10.3732/ajb.1400554  1
2015 Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ. Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. The New Phytologist. 207: 454-67. PMID 26053261 DOI: 10.1111/nph.13491  1
2015 Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, Soltis DE. Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta. Applications in Plant Sciences. 3. PMID 25995975 DOI: 10.3732/apps.1400105  1
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Zanne et al. reply. Nature. 521: E6-7. PMID 25993971 DOI: 10.1038/nature14394  1
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Corrigendum: Three keys to the radiation of angiosperms into freezing environments. Nature. 521: 380. PMID 25993966 DOI: 10.1038/nature14371  1
2015 Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, De Smet R, Barbazuk WB, Soltis DE, Soltis PS. MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes. Applications in Plant Sciences. 3. PMID 25909041 DOI: 10.3732/apps.1400115  1
2015 Landis JB, Ventura KL, Soltis DE, Soltis PS, Oppenheimer DG. Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape. Applications in Plant Sciences. 3. PMID 25909040 DOI: 10.3732/apps.1400112  1
2015 Chanderbali AS, He F, Soltis PS, Soltis DE. Out of the Water: Origin and Diversification of the LBD Gene Family. Molecular Biology and Evolution. PMID 25839188 DOI: 10.1093/molbev/msv080  1
2015 Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Molecular Biology and Evolution. 32: 2001-14. PMID 25837578 DOI: 10.1093/molbev/msv081  1
2015 Tian S, Lei SQ, Hu W, Deng LL, Li B, Meng QL, Soltis DE, Soltis PS, Fan DM, Zhang ZY. Repeated range expansions and inter-/postglacial recolonization routes of Sargentodoxa cuneata (Oliv.) Rehd. et Wils. (Lardizabalaceae) in subtropical China revealed by chloroplast phylogeography. Molecular Phylogenetics and Evolution. 85: 238-46. PMID 25732070 DOI: 10.1016/j.ympev.2015.02.016  1
2015 Mavrodiev EV, Chester M, Suárez-Santiago VN, Visger CJ, Rodriguez R, Susanna A, Baldini RM, Soltis PS, Soltis DE. Multiple origins and chromosomal novelty in the allotetraploid Tragopogon castellanus (Asteraceae). The New Phytologist. 206: 1172-83. PMID 25557021 DOI: 10.1111/nph.13227  1
2015 Dobešová E, Malinská H, Matyášek R, Leitch AR, Soltis DE, Soltis PS, Kova?ík A. Silenced rRNA genes are activated and substitute for partially eliminated active homeologs in the recently formed allotetraploid, Tragopogon mirus (Asteraceae). Heredity. 114: 356-65. PMID 25537492 DOI: 10.1038/hdy.2014.111  1
2015 Deng JB, Drew BT, Mavrodiev EV, Gitzendanner MA, Soltis PS, Soltis DE. Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae. Molecular Phylogenetics and Evolution. 83: 86-98. PMID 25479063 DOI: 10.1016/j.ympev.2014.11.011  1
2015 Sun M, Soltis DE, Soltis PS, Zhu X, Burleigh JG, Chen Z. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Molecular Phylogenetics and Evolution. 83: 156-66. PMID 25463749 DOI: 10.1016/j.ympev.2014.11.003  1
2015 Chester M, Riley RK, Soltis PS, Soltis DE. Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae). Heredity. 114: 309-17. PMID 25370212 DOI: 10.1038/hdy.2014.101  1
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, ... ... Soltis DE, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  1
2014 Yoo MJ, Liu X, Pires JC, Soltis PS, Soltis DE. Nonadditive gene expression in polyploids. Annual Review of Genetics. 48: 485-517. PMID 25421600 DOI: 10.1146/annurev-genet-120213-092159  1
2014 Vergara R, Gitzendanner MA, Soltis DE, Soltis PS. Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data. Ecology and Evolution. 4: 2450-71. PMID 25360279 DOI: 10.1002/ece3.1108  1
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, ... ... Soltis DE, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/pnas.1323926111  1
2014 Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, ... Soltis DE, et al. Between two fern genomes. Gigascience. 3: 15. PMID 25324969 DOI: 10.1186/2047-217X-3-15  1
2014 Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA. Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids. Bmc Genomics. 15: 701. PMID 25145399 DOI: 10.1186/1471-2164-15-701  1
2014 Straub SC, Moore MJ, Soltis PS, Soltis DE, Liston A, Livshultz T. Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae. Molecular Phylogenetics and Evolution. 80: 169-85. PMID 25109653 DOI: 10.1016/j.ympev.2014.07.020  1
2014 Soltis DE, Visger CJ, Soltis PS. The polyploidy revolution then…and now: Stebbins revisited. American Journal of Botany. 101: 1057-1078. PMID 25049267 DOI: 10.3732/ajb.1400178  1
2014 Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE. The legacy of diploid progenitors in allopolyploid gene expression patterns. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958927 DOI: 10.1098/rstb.2013.0354  0.6
2014 Soltis PS, Liu X, Marchant DB, Visger CJ, Soltis DE. Polyploidy and novelty: Gottlieb's legacy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958924 DOI: 10.1098/rstb.2013.0351  1
2014 Crawford DJ, Doyle JJ, Soltis DE, Soltis PS, Wendel JF. Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958916 DOI: 10.1098/rstb.2013.0341  1
2014 Melzer R, Härter A, Rümpler F, Kim S, Soltis PS, Soltis DE, Theißen G. DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution. Annals of Botany. 114: 1431-43. PMID 24902716 DOI: 10.1093/aob/mcu094  1
2014 Soltis DE, Segovia-Salcedo MC, Jordon-Thaden I, Majure L, Miles NM, Mavrodiev EV, Mei W, Cortez MB, Soltis PS, Gitzendanner MA. Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (). The New Phytologist. 202: 1105-17. PMID 24754325 DOI: 10.1111/nph.12756  1
2014 Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, ... ... Soltis DE, et al. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the United States of America. 111: 6672-7. PMID 24733898 DOI: 10.1073/pnas.1319929111  1
2014 Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. Bmc Evolutionary Biology. 14: 23. PMID 24533922 DOI: 10.1186/1471-2148-14-23  1
2014 Soltis PS, Soltis DE. Flower diversity and angiosperm diversification. Methods in Molecular Biology (Clifton, N.J.). 1110: 85-102. PMID 24395253 DOI: 10.1007/978-1-4614-9408-9_4  1
2014 Drew BT, Ruhfel BR, Smith SA, Moore MJ, Briggs BG, Gitzendanner MA, Soltis PS, Soltis DE. Another look at the root of the angiosperms reveals a familiar tale. Systematic Biology. 63: 368-82. PMID 24391149 DOI: 10.1093/sysbio/syt108  1
2014 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Three keys to the radiation of angiosperms into freezing environments. Nature. 506: 89-92. PMID 24362564 DOI: 10.1038/nature12872  1
2014 García N, Meerow AW, Soltis DE, Soltis PS. Testing deep reticulate evolution in amaryllidaceae tribe hippeastreae (asparagales) with its and chloroplast sequence data Systematic Botany. 39: 75-89. DOI: 10.1600/036364414X678099  1
2014 Cook JA, Edwards SV, Lacey EA, Guralnick RP, Soltis PS, Soltis DE, Welch CK, Bell KC, Galbreath KE, Himes C, Allen JM, Heath TA, Carnaval AC, Cooper KL, Liu M, et al. Natural history collections as emerging resources for innovative education Bioscience. 64: 725-734. DOI: 10.1093/biosci/biu096  1
2014 Maia VH, Gitzendanner MA, Soltis PS, Wong GKS, Soltis DE. Angiosperm phylogeny based on 18S/26S rDNA sequence data: Constructing a large data set using next-generation sequence data International Journal of Plant Sciences. 175: 613-650. DOI: 10.1086/676675  1
2014 Germain-Aubrey CC, Soltis PS, Neubig KM, Thurston T, Soltis DE, Gitzendanner MA. Using comparative biogeography to retrace the origins of an ecosystem: The case of four plants endemic to the central Florida scrub International Journal of Plant Sciences. 175: 418-431. DOI: 10.1086/675571  1
2014 Majure LC, Soltis DE, Soltis PS, Judd WS. A case of mistaken identity, Opuntia abjecta, long-lost in synonymy under the Caribbean species, O. triacantha, and a reassessment of the enigmatic O. cubensis Brittonia. 66: 118-130. DOI: 10.1007/s12228-013-9307-z  1
2013 Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates HR, Qi X, Brockington SF, Soltis PS, Soltis DE, Gitzendanner MA. A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences. 1. PMID 25202518 DOI: 10.3732/apps.1200497  1
2013 Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/science.1241130  1
2013 Lipman MJ, Chester M, Soltis PS, Soltis DE. Natural hybrids between Tragopogon mirus and T. miscellus (Asteraceae): a new perspective on karyotypic changes following hybridization at the polyploid level. American Journal of Botany. 100: 2016-22. PMID 24088339 DOI: 10.3732/ajb.1300036  1
2013 Drew BT, Gazis R, Cabezas P, Swithers KS, Deng J, Rodriguez R, Katz LA, Crandall KA, Hibbett DS, Soltis DE. Lost branches on the tree of life. Plos Biology. 11: e1001636. PMID 24019756 DOI: 10.1371/journal.pbio.1001636  1
2013 Qi X, Chanderbali AS, Wong GK, Soltis DE, Soltis PS. Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants. Bmc Evolutionary Biology. 13: 143. PMID 23834366 DOI: 10.1186/1471-2148-13-143  1
2013 Soltis PS, Soltis DE. A conifer genome spruces up plant phylogenomics. Genome Biology. 14: 122. PMID 23805854 DOI: 10.1186/gb-2013-14-6-122  1
2013 McInnes L, Jones FA, Orme CD, Sobkowiak B, Barraclough TG, Chase MW, Govaerts R, Soltis DE, Soltis PS, Savolainen V. Do global diversity patterns of vertebrates reflect those of monocots? Plos One. 8: e56979. PMID 23658679 DOI: 10.1371/journal.pone.0056979  1
2013 Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, Rubio de Casas R. Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany. 100: 916-29. PMID 23629845 DOI: 10.3732/ajb.1300044  1
2013 Sun YX, Moore MJ, Meng AP, Soltis PS, Soltis DE, Li JQ, Wang HC. Complete plastid genome sequencing of Trochodendraceae reveals a significant expansion of the inverted repeat and suggests a Paleogene divergence between the two extant species. Plos One. 8: e60429. PMID 23577110 DOI: 10.1371/journal.pone.0060429  1
2013 Chester M, Lipman MJ, Gallagher JP, Soltis PS, Soltis DE. An assessment of karyotype restructuring in the neoallotetraploid Tragopogon miscellus (Asteraceae). Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 75-85. PMID 23430325 DOI: 10.1007/s10577-013-9339-y  1
2013 Ornelas JF, Sosa V, Soltis DE, Daza JM, González C, Soltis PS, Gutiérrez-Rodríguez C, de los Monteros AE, Castoe TA, Bell C, Ruiz-Sanchez E. Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica. Plos One. 8: e56283. PMID 23409165 DOI: 10.1371/journal.pone.0056283  1
2013 Arakaki M, Speranza P, Soltis PS, Soltis DE. Genetic variability of an unusual apomictic triploid cactus--Haageocereus tenuis Ritter--from the Coast of Central Peru. The Journal of Heredity. 104: 127-33. PMID 23028024 DOI: 10.1093/jhered/ess072  1
2013 Majure LC, Puente R, Griffith MP, Soltis DE, Judd WS. Opuntia lilae, another Tacinga hidden in Opuntia s.l. (Cactaceae) Systematic Botany. 38: 444-450. DOI: 10.1600/036364413X666688  1
2013 Soltis DE, Gitzendanner MA, Stull G, Chester M, Chanderbali A, Jordon-Thaden I, Chamala S, Soltis PS, Schnable PS, Brad Barbazuk W. The potential of genomics in plant systematics Taxon. 62: 886-898. DOI: 10.12705/625.13  1
2013 DePamphilis CW, Palmer JD, Rounsley S, Sankoff D, Schuster SC, Ammiraju JSS, Barbazuk WB, Chamala S, Chanderbali AS, Determann R, Hong M, Ralph P, Talag J, Tomsho L, Walts B, ... ... Soltis DE, et al. The Amborella genome and the evolution of flowering plants Science. 342. DOI: 10.1126/science.1241089  1
2013 Kim S, Soltis PS, Soltis DE. AGL6-like MADS-box genes are sister to AGL2-like MADS-box genes Journal of Plant Biology. 56: 315-325. DOI: 10.1007/s12374-013-0147-x  1
2013 Mavrodiev EV, Krahulec F, Soltis DE, Soltis PS. A cryptic taxon rather than a hybrid species of Tragopogon (Asteraceae) from the Czech Republic Kew Bulletin. 68: 133-141. DOI: 10.1007/s12225-012-9431-z  1
2013 Soltis DE, Buggs RJA, Barbazuk WB, Chamala S, Chester M, Gallagher JP, Schnable PS, Soltis PS. The early stages of polyploidy: Rapid and repeated evolution in Tragopogon Polyploidy and Genome Evolution. 271-292. DOI: 10.1007/978-3-642-31442-1_14  1
2013 Soltis PS, Soltis DE. Preface Polyploidy and Genome Evolution. v-vi. DOI: 10.1007/978-3-642-31442-1  1
2012 Majure LC, Judd WS, Soltis PS, Soltis DE. Cytogeography of the Humifusa clade of Opuntia s.s. Mill. 1754 (Cactaceae, Opuntioideae, Opuntieae): correlations with pleistocene refugia and morphological traits in a polyploid complex. Comparative Cytogenetics. 6: 53-77. PMID 24260652 DOI: 10.3897/CompCytogen.v6i1.2523  1
2012 Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, ... ... Soltis D, et al. Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. Plos One. 7: e50226. PMID 23185583 DOI: 10.1371/journal.pone.0050226  1
2012 Bell CD, Mavrodiev EV, Soltis PS, Calaminus AK, Albach DC, Cellinese N, Garcia-Jacas N, Soltis DE. Rapid diversification of Tragopogon and ecological associates in Eurasia. Journal of Evolutionary Biology. 25: 2470-80. PMID 23163328 DOI: 10.1111/j.1420-9101.2012.02616.x  1
2012 Koh J, Chen S, Zhu N, Yu F, Soltis PS, Soltis DE. Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. The New Phytologist. 196: 292-305. PMID 22861377 DOI: 10.1111/j.1469-8137.2012.04251.x  1
2012 Xiang CL, Gitzendanner MA, Soltis DE, Peng H, Lei LG. Phylogenetic placement of the enigmatic and critically endangered genus Saniculiphyllum (Saxifragaceae) inferred from combined analysis of plastid and nuclear DNA sequences. Molecular Phylogenetics and Evolution. 64: 357-67. PMID 22548837 DOI: 10.1016/j.ympev.2012.04.010  1
2012 Wang W, Ortiz Rdel C, Jacques FM, Xiang XG, Li HL, Lin L, Li RQ, Liu Y, Soltis PS, Soltis DE, Chen ZD. Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary. The New Phytologist. 195: 470-8. PMID 22548458 DOI: 10.1111/j.1469-8137.2012.04158.x  1
2012 Chen S, Xing Y, Su T, Zhou Z, Dilcher ED, Soltis DE. Phylogeographic analysis reveals significant spatial genetic structure of Incarvillea sinensis as a product of mountain building. Bmc Plant Biology. 12: 58. PMID 22546007 DOI: 10.1186/1471-2229-12-58  1
2012 Majure LC, Puente R, Griffith MP, Judd WS, Soltis PS, Soltis DE. Phylogeny of Opuntia s.s. (Cactaceae): clade delineation, geographic origins, and reticulate evolution. American Journal of Botany. 99: 847-64. PMID 22539520 DOI: 10.3732/ajb.1100375  1
2012 Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, ... ... Soltis DE, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/gb-2012-13-1-r3  1
2012 Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Next-generation sequencing and genome evolution in allopolyploids. American Journal of Botany. 99: 372-82. PMID 22268220 DOI: 10.3732/ajb.1100395  1
2012 Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Current Biology : Cb. 22: 248-52. PMID 22264605 DOI: 10.1016/j.cub.2011.12.027  1
2012 Chester M, Gallagher JP, Symonds VV, Cruz da Silva AV, Mavrodiev EV, Leitch AR, Soltis PS, Soltis DE. Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae). Proceedings of the National Academy of Sciences of the United States of America. 109: 1176-81. PMID 22228301 DOI: 10.1073/pnas.1112041109  1
2012 Brockington SF, Rudall PJ, Frohlich MW, Oppenheimer DG, Soltis PS, Soltis DE. 'Living stones' reveal alternative petal identity programs within the core eudicots. The Plant Journal : For Cell and Molecular Biology. 69: 193-203. PMID 21951031 DOI: 10.1111/j.1365-313X.2011.04797.x  1
2012 Soltis DE, Mavrodiev EV, Meyers SC, Severns PM, Zhang L, Gitzendanner MA, Ayers T, Chester M, Soltis PS. Additional origins of Ownbey's Tragopogon mirus Botanical Journal of the Linnean Society. 169: 297-311. DOI: 10.1111/j.1095-8339.2012.01244.x  1
2012 Mavrodiev EV, Gitzendanner M, Calaminus AK, Baldini RM, Soltis PS, Soltis DE. Molecular phylogeny of Tragopogon L. (Asteraceae) based on seven nuclear loci (Adh, GapC, LFY, AP3, PI, ITS, and ETS) Webbia. 67: 111-137. DOI: 10.1080/00837792.2012.10670912  1
2012 Gitzendanner MA, Weekley CW, Germain-Aubrey CC, Soltis DE, Soltis PS. Microsatellite evidence for high clonality and limited genetic diversity in Ziziphus celata (Rhamnaceae), an endangered, self-incompatible shrub endemic to the Lake Wales Ridge, Florida, USA Conservation Genetics. 13: 223-234. DOI: 10.1007/s10592-011-0287-9  1
2012 Soltis PS, Soltis DE. Angiosperm phylogeny: A framework for studies of genome evolution Plant Genome Diversity. 2: 1-11. DOI: 10.1007/978-3-7091-1160-4_1  1
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Soltis D, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/fpls.2011.00034  1
2011 Brockington SF, Walker RH, Glover BJ, Soltis PS, Soltis DE. Complex pigment evolution in the Caryophyllales. The New Phytologist. 190: 854-64. PMID 21714182 DOI: 10.1111/j.1469-8137.2011.03687.x  1
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Soltis DE, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/gb-2011-12-5-r48  1
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/ajb.1000404  1
2011 Germain-Aubrey CC, Soltis PS, Soltis DE, Gitzendanner MA. Microsatellite marker development for the federally listed Prunus geniculata (Rosaceae). American Journal of Botany. 98: e58-60. PMID 21613125 DOI: 10.3732/ajb.1000435  1
2011 Servick SV, Soltis PS, Soltis DE. Microsatellite marker development for Galax urceolata (Diapensiaceae). American Journal of Botany. 98: e48-50. PMID 21613122 DOI: 10.3732/ajb.1000427  1
2011 Zhang SD, Soltis DE, Yang Y, Li DZ, Yi TS. Multi-gene analysis provides a well-supported phylogeny of Rosales. Molecular Phylogenetics and Evolution. 60: 21-8. PMID 21540119 DOI: 10.1016/j.ympev.2011.04.008  1
2011 Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, et al. Ancestral polyploidy in seed plants and angiosperms. Nature. 473: 97-100. PMID 21478875 DOI: 10.1038/nature09916  1
2011 Buggs RJ, Zhang L, Miles N, Tate JA, Gao L, Wei W, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Current Biology : Cb. 21: 551-6. PMID 21419627 DOI: 10.1016/j.cub.2011.02.016  1
2011 Suárez-Santiago VN, Guardia CDDL, Soltis DE, Soltis PS, Blanca G. Tragopogon lainzii, a new species of Tragopogon (Asteraceae) segregated from T. Dubius: Evidence from morphological and molecular data Systematic Botany. 36: 470-480. DOI: 10.1600/036364411X569651  1
2011 Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, ... ... Soltis DE, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923  1
2011 Soltis PS, Burleigh JG, Chanderbali AS, Yoo MJ, Soltis DE. Gene and Genome Duplications in Plants Evolution After Gene Duplication. 269-298. DOI: 10.1002/9780470619902.ch15  1
2011 Carlsward BS, Judd WS, Soltis DE, Manchester S, Soltis PS. Putative morphological synapomorphies of Saxifragales and their major subclades Journal of the Botanical Research Institute of Texas. 5: 179-196.  1
2011 Malinska H, Tate JA, Mavrodiev E, Matyasek R, Lim KY, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Ribosomal RNA genes evolution in Tragopogon: A story of New and Old World allotetraploids and the synthetic lines Taxon. 60: 348-354.  1
2011 Buggs RJA, Soltis PS, Soltis DE. Biosystematic relationships and the formation of polyploids Taxon. 60: 324-332.  1
2010 Chester M, Leitch AR, Soltis PS, Soltis DE. Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation). Genes. 1: 166-92. PMID 24710040 DOI: 10.3390/genes1020166  1
2010 Arakaki M, Soltis DE, Soltis PS, Speranza PR. Characterization of polymorphic microsatellite loci in Haageocereus (Trichocereeae, Cactaceae). American Journal of Botany. 97: e17-9. PMID 21622399 DOI: 10.3732/ajb.1000026  1
2010 López-Vinyallonga S, Arakaki M, Garcia-Jacas N, Susanna A, Gitzendanner MA, Soltis DE, Soltis PS. Isolation and characterization of novel microsatellite markers for Arctium minus (Compositae). American Journal of Botany. 97: e4-6. PMID 21622378 DOI: 10.3732/ajb.0900376  1
2010 Bell CD, Soltis DE, Soltis PS. The age and diversification of the angiosperms re-revisited. American Journal of Botany. 97: 1296-303. PMID 21616882 DOI: 10.3732/ajb.0900346  1
2010 Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proceedings of the National Academy of Sciences of the United States of America. 107: 22570-5. PMID 21149731 DOI: 10.1073/pnas.1013395108  1
2010 Yoo MJ, Chanderbali AS, Altman NS, Soltis PS, Soltis DE. Evolutionary trends in the floral transcriptome: insights from one of the basalmost angiosperms, the water lily Nuphar advena (Nymphaeaceae). The Plant Journal : For Cell and Molecular Biology. 64: 687-98. PMID 21070420 DOI: 10.1111/j.1365-313X.2010.04357.x  1
2010 Malinska H, Tate JA, Matyasek R, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids. Bmc Evolutionary Biology. 10: 291. PMID 20858289 DOI: 10.1186/1471-2148-10-291  1
2010 Buggs RJ, Elliott NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS. Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus. The New Phytologist. 186: 175-83. PMID 20409177 DOI: 10.1111/j.1469-8137.2010.03205.x  1
2010 Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology. 19: 132-46. PMID 20331776 DOI: 10.1111/j.1365-294X.2009.04469.x  1
2010 Symonds VV, Soltis PS, Soltis DE. Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Evolution; International Journal of Organic Evolution. 64: 1984-2003. PMID 20199558 DOI: 10.1111/j.1558-5646.2010.00978.x  1
2010 Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proceedings of the National Academy of Sciences of the United States of America. 107: 4623-8. PMID 20176954 DOI: 10.1073/pnas.0907801107  1
2010 Koh J, Soltis PS, Soltis DE. Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). Bmc Genomics. 11: 97. PMID 20141639 DOI: 10.1186/1471-2164-11-97  1
2010 Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, et al. Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales Annals of the Missouri Botanical Garden. 97: 584-616. DOI: 10.3417/2010023  1
2010 Soltis DE, Moore MJ, Burleigh JG, Bell CD, Soltis PS. Assembling the angiosperm tree of life: Progress and future prospects Annals of the Missouri Botanical Garden. 97: 514-526. DOI: 10.3417/2009136  1
2010 Morris AB, Graham CH, Soltis DE, Soltis PS. Reassessment of phylogeographical structure in an eastern North American tree using Monmonier's algorithm and ecological niche modelling Journal of Biogeography. 37: 1657-1667. DOI: 10.1111/j.1365-2699.2010.02315.x  1
2010 Yoo MJ, Soltis PS, Soltis DE. Expression of floral MADS-box genes in two divergent water lilies: Nymphaeales and Nelumbo International Journal of Plant Sciences. 171: 121-146. DOI: 10.1086/648986  1
2010 Soltis DE, Buggs RJA, Doyle JJ, Soltis PS. What we still don't know about polyploidy Taxon. 59: 1387-1403.  1
2010 Soltis DE, Burleigh G, Barbazuk WB, Moore MJ, Soltis PS. Advances in the use of next-generation sequence data in plant systematics and evolution Acta Horticulturae. 859: 193-206.  1
2009 Tate JA, Symonds VV, Doust AN, Buggs RJ, Mavrodiev E, Majure LC, Soltis PS, Soltis DE. Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery. American Journal of Botany. 96: 979-88. PMID 21628250 DOI: 10.3732/ajb.0800299  1
2009 Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS. Polyploidy and angiosperm diversification. American Journal of Botany. 96: 336-48. PMID 21628192 DOI: 10.3732/ajb.0800079  1
2009 Soltis PS, Brockington SF, Yoo MJ, Piedrahita A, Latvis M, Moore MJ, Chanderbali AS, Soltis DE. Floral variation and floral genetics in basal angiosperms. American Journal of Botany. 96: 110-28. PMID 21628179 DOI: 10.3732/ajb.0800182  1
2009 Clayton JW, Soltis PS, Soltis DE. Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales). Systematic Biology. 58: 395-410. PMID 20525593 DOI: 10.1093/sysbio/syp041  1
2009 Soltis DE, Buggs RJ, Barbazuk WB, Schnable PS, Soltis PS. On the origins of species: does evolution repeat itself in polyploid populations of independent origin? Cold Spring Harbor Symposia On Quantitative Biology. 74: 215-23. PMID 19687140 DOI: 10.1101/sqb.2009.74.007  1
2009 Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, et al. Comparison of next generation sequencing technologies for transcriptome characterization. Bmc Genomics. 10: 347. PMID 19646272 DOI: 10.1186/1471-2164-10-347  1
2009 Buggs RJ, Soltis PS, Soltis DE. Does hybridization between divergent progenitors drive whole-genome duplication? Molecular Ecology. 18: 3334-9. PMID 19627486 DOI: 10.1111/j.1365-294X.2009.04285.x  1
2009 Soltis PS, Soltis DE. The role of hybridization in plant speciation. Annual Review of Plant Biology. 60: 561-88. PMID 19575590 DOI: 10.1146/annurev.arplant.043008.092039  1
2009 Tate JA, Joshi P, Soltis KA, Soltis PS, Soltis DE. On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae). Bmc Plant Biology. 9: 80. PMID 19558696 DOI: 10.1186/1471-2229-9-80  1
2009 Chanderbali AS, Albert VA, Leebens-Mack J, Altman NS, Soltis DE, Soltis PS. Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae). Proceedings of the National Academy of Sciences of the United States of America. 106: 8929-34. PMID 19451627 DOI: 10.1073/pnas.0811476106  1
2009 Soltis DE, Burleigh JG. Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 106: 5455-6. PMID 19336584 DOI: 10.1073/pnas.0901994106  1
2009 Garcia-Jacas N, Soltis PS, Font M, Soltis DE, Vilatersana R, Susanna A. The polyploid series of Centaurea toletana: glacial migrations and introgression revealed by nrDNA and cpDNA sequence analyzes. Molecular Phylogenetics and Evolution. 52: 377-94. PMID 19306936 DOI: 10.1016/j.ympev.2009.03.010  1
2009 Burleigh JG, Hilu KW, Soltis DE. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms. Bmc Evolutionary Biology. 9: 61. PMID 19292928 DOI: 10.1186/1471-2148-9-61  1
2009 Buggs RJ, Doust AN, Tate JA, Koh J, Soltis K, Feltus FA, Paterson AH, Soltis PS, Soltis DE. Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids. Heredity. 103: 73-81. PMID 19277058 DOI: 10.1038/hdy.2009.24  1
2009 Wang H, Moore MJ, Soltis PS, Bell CD, Brockington SF, Alexandre R, Davis CC, Latvis M, Manchester SR, Soltis DE. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proceedings of the National Academy of Sciences of the United States of America. 106: 3853-8. PMID 19223592 DOI: 10.1073/pnas.0813376106  1
2009 Bremer B, Bremer K, Chase MW, Fay MF, Reveal JL, Bailey LH, Soltis DE, Soltis PS, Stevens PF. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III Botanical Journal of the Linnean Society. 161: 105-121. DOI: 10.1111/j.1095-8339.2009.00996.x  1
2009 Baker CA, Jones L, Leahy RM, Soltis DE. Tomato spotted wilt virus found in five species of the genus tragopogon in a Florida Greenhouse Plant Disease. 93: 546. DOI: 10.1094/PDIS-93-5-0546A  1
2009 Brockington SF, Alexandre R, Ramdial J, Moore MJ, Crawley S, Dhingra A, Hilu K, Soltis DE, Soltisy PS. Phylogeny of the Caryophyllales sensu lato: Revisiting hypotheses on pollination biology and perianth differentiation in the core Caryophyllales International Journal of Plant Sciences. 170: 627-643. DOI: 10.1086/597785  1
2009 Soltis DE, Moore MJ, Burleigh G, Soltis PS. Molecular markers and concepts of plant evolutionary relationships: Progress, promise, and future prospects Critical Reviews in Plant Sciences. 28: 1-15. DOI: 10.1080/07352680802665297  1
2008 Edwards CE, Soltis DE, Soltis PS. PERMANENT GENETIC RESOURCES: Isolation, characterization and cross-species amplifications of microsatellite loci from Conradina (Lamiaceae). Molecular Ecology Resources. 8: 363-6. PMID 21585793 DOI: 10.1111/j.1471-8286.2007.01957.x  1
2008 Edwards CE, Soltis DE, Soltis PS. Using patterns of genetic structure based on microsatellite loci to test hypotheses of current hybridization, ancient hybridization and incomplete lineage sorting in Conradina (Lamiaceae). Molecular Ecology. 17: 5157-74. PMID 19120994 DOI: 10.1111/j.1365-294X.2008.03985.x  1
2008 Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF. Evolutionary genetics of genome merger and doubling in plants. Annual Review of Genetics. 42: 443-61. PMID 18983261 DOI: 10.1146/annurev.genet.42.110807.091524  1
2008 Lim KY, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). Plos One. 3: e3353. PMID 18843372 DOI: 10.1371/journal.pone.0003353  1
2008 Morris AB, Ickert-Bond SM, Brunson DB, Soltis DE, Soltis PS. Phylogeographical structure and temporal complexity in American sweetgum (Liquidambar styraciflua; Altingiaceae). Molecular Ecology. 17: 3889-900. PMID 18662227 DOI: 10.1111/j.1365-294X.2008.03875.x  1
2008 Soltis DE, Bell CD, Kim S, Soltis PS. Origin and early evolution of angiosperms. Annals of the New York Academy of Sciences. 1133: 3-25. PMID 18559813 DOI: 10.1196/annals.1438.005  1
2008 Chanderbali AS, Albert VA, Ashworth VE, Clegg MT, Litz RE, Soltis DE, Soltis PS. Persea americana (avocado): bringing ancient flowers to fruit in the genomics era. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 386-96. PMID 18348249 DOI: 10.1002/bies.20721  1
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/gb-2008-9-3-402  1
2008 Zhang W, Xiang QY, Thomas DT, Wiegmann BM, Frohlich MW, Soltis DE. Molecular evolution of PISTILLATA-like genes in the dogwood genus Cornus (Cornaceae). Molecular Phylogenetics and Evolution. 47: 175-95. PMID 18304837 DOI: 10.1016/j.ympev.2007.12.022  1
2008 Jian S, Soltis PS, Gitzendanner MA, Moore MJ, Li R, Hendry TA, Qiu YL, Dhingra A, Bell CD, Soltis DE. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology. 57: 38-57. PMID 18275001 DOI: 10.1080/10635150801888871  1
2008 Buggs RJA, Soltis PS, Mavrodiev EV, Symonds VV, Soltis DE. Does phylogenetic distance between parental Genomes Govern the success of polyploids Castanea. 73: 74-93. DOI: 10.2179/0008-7475(2008)73[74:DPDBPG]2.0.CO;2  1
2008 Vergara R, Minno MC, Minno M, Soltis DE, Soltis PS. Preliminary study using ISSRs to differentiate Imperata taxa (Poaceae: Andropogoneae) growing in the US Southeastern Naturalist. 7: 267-276. DOI: 10.1656/1528-7092(2008)7[267:PSUITD]2.0.CO;2  1
2008 Soltis DE, Mavrodiev EV, Doyle JJ, Rauscher J, Soltis PS. ITS and ETS sequence data and phylogeny reconstruction in allopolyploids and hybrids Systematic Botany. 33: 7-20. DOI: 10.1600/036364408783887401  1
2008 Mavrodiev EV, Nawchoo I, Soltis PS, Soltis DE. Molecular data reveal that the tetraploid Tragopogon kashmirianus (Asteraceae: Lactuceae) is distinct from the North American T. mirus Botanical Journal of the Linnean Society. 158: 391-398. DOI: 10.1111/j.1095-8339.2008.00900.x  1
2008 Edwards CE, Lefkowitz D, Soltis DE, Soltis PS. Phylogeny of Conradina and related southeastern scrub mints (Lamiaceae) based on GapC gene sequences International Journal of Plant Sciences. 169: 579-594. DOI: 10.1086/528758  1
2008 Duarte JM, Wall PK, Zahn LM, Soltis PS, Soltis DE, Leebens-Mack J, Carlson JE, Ma H, DePamphilis CW. Utility of Amborella trichopoda and Nuphar advena expressed sequence tags for comparative sequence analysis Taxon. 57: 1110-1122.  1
2008 Mavrodiev EV, Soltis PS, Soltis DE. Putative parentage of six Old World polyploids in Tragopogon L. (Asteraceae: Scorzonerinae) based on ITS, ETS, and plastid sequence data Taxon. 57: 1215-1232.  1
2008 Löhne C, Yoo MJ, Borsch T, Wiersema J, Wilde V, Bell CD, Barthlott W, Soltis DE, Soltis PS. Biogeography of Nymphaeales: Extant patterns and historical events Taxon. 57: 1123-1146.  1
2008 Brockington SF, Mavrodiev E, Ramdial J, Dhingra A, Soltis PS, Soltis DE. Keep the DNA rolling: Multiple Displacement Amplification of archival plant DNA extracts Taxon. 57: 944-948.  1
2007 Oliveira LO, Huck RB, Gitzendanner MA, Judd WS, Soltis DE, Soltis PS. Molecular phylogeny, biogeography, and systematics of Dicerandra (Lamiaceae), a genus endemic to the southeastern United States. American Journal of Botany. 94: 1017-27. PMID 21636471 DOI: 10.3732/ajb.94.6.1017  1
2007 Paun O, Fay MF, Soltis DE, Chase MW. Genetic and epigenetic alterations after hybridization and genome doubling. Taxon. 56: 649-56. PMID 21082042  0.6
2007 Moore MJ, Bell CD, Soltis PS, Soltis DE. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 104: 19363-8. PMID 18048334 DOI: 10.1073/pnas.0708072104  1
2007 Soltis DE, Ma H, Frohlich MW, Soltis PS, Albert VA, Oppenheimer DG, Altman NS, dePamphilis C, Leebens-Mack J. The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression Trends in Plant Science. 12: 358-367. PMID 17658290 DOI: 10.1016/j.tplants.2007.06.012  1
2007 Soltis DE, Chanderbali AS, Kim S, Buzgo M, Soltis PS. The ABC model and its applicability to basal angiosperms. Annals of Botany. 100: 155-63. PMID 17616563 DOI: 10.1093/aob/mcm117  1
2007 Matyásek R, Tate JA, Lim YK, Srubarová H, Koh J, Leitch AR, Soltis DE, Soltis PS, Kovarík A. Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics. 176: 2509-19. PMID 17603114 DOI: 10.1534/genetics.107.072751  1
2007 Manos PS, Soltis PS, Soltis DE, Manchester SR, Oh SH, Bell CD, Dilcher DL, Stone DE. Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets. Systematic Biology. 56: 412-30. PMID 17558964 DOI: 10.1080/10635150701408523  1
2007 Suárez-Santiago VN, Salinas MJ, Garcia-Jacas N, Soltis PS, Soltis DE, Blanca G. Reticulate evolution in the Acrolophus subgroup (Centaurea L., Compositae) from the western Mediterranean: Origin and diversification of section Willkommia Blanca Molecular Phylogenetics and Evolution. 43: 156-172. PMID 17129737 DOI: 10.1016/j.ympev.2006.08.006  1
2007 Arakaki M, Soltis DE, Speranza P. New chromosome counts and evidence of polyploidy in Haageocereus and related genera in tribe Trichocereeae and other tribes of Cactaceae Brittonia. 59: 290-297. DOI: 10.1663/0007-196X(2007)59[290:NCCAEO]2.0.CO;2  1
2007 Judd WS, Soltis DE, Soltis PS, Ionta G. Tolmiea diplomenziesii: A new species from the Pacific Northwest and the diploid sister taxon of the autotetraploid T. menziesii (Saxifragaceae) Brittonia. 59: 217-225. DOI: 10.1663/0007-196X(2007)59[217:TDANSF]2.0.CO;2  1
2007 Morris AB, Bell CD, Clayton JW, Judd WS, Soltis DE, Soltis PS. Phylogeny and divergence time estimation in Illicium with implications for new world biogeography Systematic Botany. 32: 236-249. DOI: 10.1600/036364407781179734  1
2007 Edwards CE, Arakaki M, Quintana-Ascencio PF, Soltis DE, Soltis PS. Isolation and characterization of microsatellite loci from the endangered highlands scrub hypericum (Hypericum cumulicola) Molecular Ecology Notes. 7: 1135-1137. DOI: 10.1111/j.1471-8286.2007.01808.x  1
2007 Clayton JW, Fernando ES, Soltis PS, Soltis DE. Molecular phylogeny of the tree-of-heaven family (simaroubaceae) based on chloroplast and nuclear markers International Journal of Plant Sciences. 168: 1325-1339. DOI: 10.1086/521796  1
2007 Mavrodiev EV, Soltis PS, Gitzendanner MA, Baldini RM, Soltis DE. Polyphyly of Tragopogon porrifolius L. (Asteraceae), a European native with intercontinental disjuncts International Journal of Plant Sciences. 168: 889-904. DOI: 10.1086/518258  1
2007 Buzgo M, Chanderbali AS, Kim S, Zheng U, Oppenheimer DG, Soltis PS, Soltis DE. Floral developmental morphology of Persea americana (Avocado, Lauraceae): The oddities of male organ identity International Journal of Plant Sciences. 168: 261-284. DOI: 10.1086/510297  1
2007 Soltis DE, Gitzendanner MA, Soltis PS. A 567-taxon data set for angiosperms: The challenges posed by Bayesian analyses of large data sets International Journal of Plant Sciences. 168: 137-157. DOI: 10.1086/509788  1
2007 Paun O, Fay MF, Soltis DE, Chase MW. Genetic and epigenetic alterations after hybridization and genome doubling Taxon. 56: 649-656.  1
2007 Cantino PD, Doyle JA, Graham SW, Judd WS, Olmstead RG, Soltis DE, Soltis PS, Donoghue MJ. Towards a phylogenetic nomenclature of Tracheophyta Taxon. 56: 822-846.  1
2007 Soltis DE, Clayton JW, Davis CC, Gitzendanner MA, Cheek M, Savolainen V, Amorim AM, Soltis PS. Monophyly and relationships of the enigmatic family Peridiscaceae Taxon. 56: 65-73.  1
2007 Soltis DE, Soltis PS, Schemske DW, Hancock JF, Thompson JN, Husband BC, Judd WS. Autopolyploidy in angiosperms: Have we grossly underestimated the number of species? Taxon. 56: 13-30.  1
2006 Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS. Comparative phylogeography of unglaciated eastern North America. Molecular Ecology. 15: 4261-93. PMID 17107465 DOI: 10.1111/j.1365-294X.2006.03061.x  1
2006 Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, Folta KM, Soltis DE. Rapid and accurate pyrosequencing of angiosperm plastid genomes. Bmc Plant Biology. 6: 17. PMID 16934154 DOI: 10.1186/1471-2229-6-17  1
2006 Lindqvist C, Scheen AC, Yoo MJ, Grey P, Oppenheimer DG, Leebens-Mack JH, Soltis DE, Soltis PS, Albert VA. An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): Characterization and microsatellite markers Bmc Plant Biology. 6. PMID 16928278 DOI: 10.1186/1471-2229-6-16  1
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, ... ... Soltis DE, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/omi.2006.10.231  1
2006 Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, DePamphilis CW. Widespread genome duplications throughout the history of flowering plants Genome Research. 16: 738-749. PMID 16702410 DOI: 10.1101/gr.4825606  1
2006 Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 173: 1599-611. PMID 16648586 DOI: 10.1534/genetics.106.057646  1
2006 Yoo MJ, Albert VA, Soltis PS, Soltis DE. Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants Bmc Plant Biology. 6. PMID 16504046 DOI: 10.1186/1471-2229-6-3  1
2006 Kim S, Soltis PS, Wall K, Soltis DE. Phylogeny and domain evolution in the APETALA2-like gene family. Molecular Biology and Evolution. 23: 107-20. PMID 16151182 DOI: 10.1093/molbev/msj014  1
2006 Edwards CE, Soltis DE, Soltis PS. Molecular phylogeny of conradina and other scrub mints (Lamiaceae) from the southeastern USA: Evidence for hybridization in pleistocene refugia? Systematic Botany. 31: 193-207. DOI: 10.1600/036364406775971688  1
2006 Chanderbali AS, Kim S, Buzgo M, Zheng U, Oppenheimer DG, Soltis DE, Soltis PS. Genetic footprints of stamen ancestors guide perianth evolution in Persea (Lauraceae) International Journal of Plant Sciences. 167: 1075-1089. DOI: 10.1086/507586  1
2006 Soltis PS, Soltis DE, Kim S, Chanderbali A, Buzgo M. Expression of Floral Regulators in Basal Angiosperms and the Origin and Evolution of ABC-Function Advances in Botanical Research. 44: 483-506. DOI: 10.1016/S0065-2296(06)44012-X  1
2006 Chase MW, Fay MF, Soltis DE, Soltis PS, Takahashi KT, Savolainen V. Simple phylogenetic tree searches easily "succeed" with large matrices of single genes Taxon. 55: 573-578.  1
2005 Leebens-Mack J, Soltis DE, Soltis PS. Plant reproductive genomics at the Plant and Animal Genome Conference. Comparative and Functional Genomics. 6: 159-69. PMID 18629227 DOI: 10.1002/cfg.469  1
2005 Kim S, Koh J, Yoo MJ, Kong H, Hu Y, Ma H, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators. The Plant Journal : For Cell and Molecular Biology. 43: 724-44. PMID 16115069 DOI: 10.1111/j.1365-313X.2005.02487.x  1
2005 Bell CD, Soltis DE, Soltis PS. The age of the angiosperms: a molecular timescale without a clock. Evolution; International Journal of Organic Evolution. 59: 1245-58. PMID 16050101  1
2005 Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, et al. Floral gene resources from basal angiosperms for comparative genomics research. Bmc Plant Biology. 5: 5. PMID 15799777 DOI: 10.1186/1471-2229-5-5  1
2005 Zahn LM, Kong H, Leebens-Mack JH, Kim S, Soltis PS, Landherr LL, Soltis DE, Depamphilis CW, Ma H. The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history. Genetics. 169: 2209-23. PMID 15687268 DOI: 10.1534/genetics.104.037770  1
2005 Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyasek R, Rocca J, Soltis DE, Soltis PS. Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics. 169: 931-44. PMID 15654116 DOI: 10.1534/genetics.104.032839  1
2005 Leitch IJ, Soltis DE, Soltis PS, Bennett MD. Evolution of DNA amounts across land plants (embryophyta). Annals of Botany. 95: 207-17. PMID 15596468 DOI: 10.1093/aob/mci014  1
2005 Yoo MJ, Bell CD, Soltis PS, Soltis DE. Divergence times and historical biogeography of nymphaeales Systematic Botany. 30: 693-704. DOI: 10.1600/036364405775097798  1
2005 Tate JA, Soltis PS, Soltis DE. Polyploidy in Plants The Evolution of the Genome. 371-426. DOI: 10.1016/B978-012301463-4/50009-7  1
2005 Qiu YL, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu KW, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, et al. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes International Journal of Plant Sciences. 166: 815-842.  1
2005 Buzgo M, Soltis PS, Kim S, Soltis DE. The making of the flower Biologist. 52: 149-154.  1
2005 Kim S, Koh J, Ma H, Hu Y, Endress PK, Hauser BA, Buzgo M, Soltis PS, Soltis DE. Sequence and expression studies of A-, B-, and E-class MADS-box homologues in Eupomatia (Eupomatiaceae): Support for the bracteate origin of the calyptra International Journal of Plant Sciences. 166: 185-198.  1
2005 Mavrodiev EV, Tancig M, Sherwood AM, Gitzendanner MA, Rocca J, Soltis PS, Soltis DE. Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequence data International Journal of Plant Sciences. 166: 117-133.  1
2004 Kim S, Yoo MJ, Albert VA, Farris JS, Soltis PS, Soltis DE. Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication. American Journal of Botany. 91: 2102-18. PMID 21652358 DOI: 10.3732/ajb.91.12.2102  1
2004 Soltis DE, Albert VA, Savolainen V, Hilu K, Qiu YL, Chase MW, Farris JS, Stefanović S, Rice DW, Palmer JD, Soltis PS. Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics. Trends in Plant Science. 9: 477-83. PMID 15465682 DOI: 10.1016/j.tplants.2004.08.008  1
2004 Kim S, Soltis DE, Soltis PS, Zanis MJ, Suh Y. Phylogenetic relationships among early-diverging eudicots based on four genes: were the eudicots ancestrally woody? Molecular Phylogenetics and Evolution. 31: 16-30. PMID 15019605 DOI: 10.1016/j.ympev.2003.07.017  1
2004 Kim S, Yoo MJ, Albert VA, Farris JS, Soltis PS, Soltis DE. Phylogeny and diversification of B-function MADS-box genes in angiosperms: Evolutionary and functional implications of a 260-million-year-old duplication American Journal of Botany. 91: 2102-2118. DOI: 10.1016/j.matlet.2004.01.006  1
2003 Soltis DE, Senters AE, Zanis MJ, Kim S, Thompson JD, Soltis PS, Ronse De Craene LP, Endress PK, Farris JS. Gunnerales are sister to other core eudicots: implications for the evolution of pentamery. American Journal of Botany. 90: 461-70. PMID 21659139 DOI: 10.3732/ajb.90.3.461  1
2002 Soltis DE, Soltis PS, Zanis MJ. Phylogeny of seed plants based on evidence from eight genes. American Journal of Botany. 89: 1670-81. PMID 21665594 DOI: 10.3732/ajb.89.10.1670  1
2002 Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ. The root of the angiosperms revisited. Proceedings of the National Academy of Sciences of the United States of America. 99: 6848-53. PMID 12011443 DOI: 10.1073/pnas.092136399  1
1988 Rieseberg LH, Soltis DE, Palmer JD. A MOLECULAR REEXAMINATION OF INTROGRESSION BETWEEN HELIANTHUS ANNUUS AND H. BOLANDERI (COMPOSITAE). Evolution; International Journal of Organic Evolution. 42: 227-238. PMID 28567846 DOI: 10.1111/j.1558-5646.1988.tb04127.x  0.68
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