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Timothy Moore Vogel, Ph.D - Publications

Laboratoire Ampère Ecole Centrale de Lyon, Université de Lyon, France 
Metagenomics, prokaryotes

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Finn DR, Bergk-Pinto B, Hazard C, Nicol GW, Tebbe CC, Vogel TM. Functional trait relationships demonstrate life strategies in terrestrial prokaryotes. Fems Microbiology Ecology. 97. PMID 33960387 DOI: 10.1093/femsec/fiab068  1
2020 Holland AT, Bergk Pinto B, Layton R, Williamson CJ, Anesio AM, Vogel TM, Larose C, Tranter M. Over Winter Microbial Processes in a Svalbard Snow Pack: An Experimental Approach. Frontiers in Microbiology. 11: 1029. PMID 32547512 DOI: 10.3389/Fmicb.2020.01029  1
2020 Tignat-Perrier R, Dommergue A, Thollot A, Magand O, Amato P, Joly M, Sellegri K, Vogel TM, Larose C. Seasonal shift in airborne microbial communities. The Science of the Total Environment. 716: 137129. PMID 32044476 DOI: 10.1016/J.Scitotenv.2020.137129  1
2020 Tignat-Perrier R, Dommergue A, Thollot A, Keuschnig C, Magand O, Vogel TM, Larose C. Author Correction: Global airborne microbial communities controlled by surrounding landscapes and wind conditions. Scientific Reports. 10: 2389. PMID 32024962 DOI: 10.1038/S41598-020-59138-5  1
2020 Tignat-Perrier R, Dommergue A, Thollot A, Magand O, Vogel TM, Larose C. Microbial functional signature in the atmospheric boundary layer Biogeosciences Discussions. 1-21. DOI: 10.5194/Bg-2020-236  1
2019 Bergk Pinto B, Maccario L, Dommergue A, Vogel TM, Larose C. Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow? Frontiers in Microbiology. 10: 2492. PMID 31749784 DOI: 10.3389/Fmicb.2019.02492  1
2019 Tignat-Perrier R, Dommergue A, Thollot A, Keuschnig C, Magand O, Vogel TM, Larose C. Global airborne microbial communities controlled by surrounding landscapes and wind conditions. Scientific Reports. 9: 14441. PMID 31595018 DOI: 10.1038/S41598-019-51073-4  1
2019 Hoyos-Hernandez C, Courbert C, Simonucci C, David S, Vogel TM, Larose C. Community structure and functional genes in radionuclide contaminated soils in Chernobyl and Fukushima. Fems Microbiology Letters. PMID 31504457 DOI: 10.1093/Femsle/Fnz180  1
2019 Dommergue A, Amato P, Tignat-Perrier R, Magand O, Thollot A, Joly M, Bouvier L, Sellegri K, Vogel T, Sonke JE, Jaffrezo JL, Andrade M, Moreno I, Labuschagne C, Martin L, et al. Methods to Investigate the Global Atmospheric Microbiome. Frontiers in Microbiology. 10: 243. PMID 30967843 DOI: 10.3389/Fmicb.2019.00243  1
2019 Maccario L, Carpenter SD, Deming JW, Vogel TM, Larose C. Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover. Scientific Reports. 9: 2290. PMID 30783153 DOI: 10.1038/S41598-019-38744-Y  1
2017 Nielsen TK, Rasmussen M, Demanèche S, Cecillon S, Vogel TM, Hansen LH. Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH. Genome Biology and Evolution. 9: 2477-2490. PMID 28961970 DOI: 10.1093/Gbe/Evx185  1
2016 Müller JB, Ramos DT, Larose C, Fernandes M, Lazzarin HS, Vogel TM, Corseuil HX. Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater. Journal of Hazardous Materials. 326: 229-236. PMID 28033549 DOI: 10.1016/j.jhazmat.2016.12.005  1
2016 Fedrizzi F, Ramos DT, Lazzarin HS, Fernandes M, Larose C, Vogel TM, Corseuil HX. A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation. Environmental Science & Technology. PMID 27935684 DOI: 10.1021/Acs.Est.6B03604  1
2016 Paitier A, Godain A, Lyon D, Haddour N, Vogel TM, Monier JM. Microbial fuel cell anodic microbial population dynamics during MFC start-up. Biosensors & Bioelectronics. PMID 27836597 DOI: 10.1016/J.Bios.2016.10.096  1
2016 Ramos DT, Lazzarin HS, Alvarez PJ, Vogel TM, Fernandes M, do Rosário M, Corseuil HX. Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater. Journal of Contaminant Hydrology. 193: 48-53. PMID 27636988 DOI: 10.1016/J.Jconhyd.2016.09.002  0.4
2016 Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, ... ... Vogel TM, et al. Back to the Future of Soil Metagenomics. Frontiers in Microbiology. 7: 73. PMID 26903960 DOI: 10.3389/Fmicb.2016.00073  1
2015 Maccario L, Sanguino L, Vogel TM, Larose C. Snow and ice ecosystems: not so extreme. Research in Microbiology. PMID 26408452 DOI: 10.1016/J.Resmic.2015.09.002  1
2015 Zhu C, Delmont TO, Vogel TM, Bromberg Y. Functional Basis of Microorganism Classification. Plos Computational Biology. 11: e1004472. PMID 26317871 DOI: 10.1371/Journal.Pcbi.1004472  1
2015 Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM. Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Frontiers in Microbiology. 6: 358. PMID 25983722 DOI: 10.3389/Fmicb.2015.00358  1
2015 Sanguino L, Franqueville L, Vogel TM, Larose C. Linking environmental prokaryotic viruses and their host through CRISPRs. Fems Microbiology Ecology. 91. PMID 25908869 DOI: 10.1093/Femsec/Fiv046  1
2014 Maccario L, Vogel TM, Larose C. Potential drivers of microbial community structure and function in Arctic spring snow. Frontiers in Microbiology. 5: 413. PMID 25147550 DOI: 10.3389/Fmicb.2014.00413  1
2014 Le Digabel Y, Demanèche S, Benoit Y, Fayolle-Guichard F, Vogel TM. Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. Journal of Hazardous Materials. 279: 502-10. PMID 25108826 DOI: 10.1016/J.Jhazmat.2014.07.013  1
2014 Nesme J, Cécillon S, Delmont TO, Monier JM, Vogel TM, Simonet P. Large-scale metagenomic-based study of antibiotic resistance in the environment. Current Biology : Cb. 24: 1096-100. PMID 24814145 DOI: 10.1016/J.Cub.2014.03.036  1
2014 Jacquiod S, Demanèche S, Franqueville L, Ausec L, Xu Z, Delmont TO, Dunon V, Cagnon C, Mandic-Mulec I, Vogel TM, Simonet P. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology. 190: 18-29. PMID 24721211 DOI: 10.1016/J.Jbiotec.2014.03.036  1
2014 David MM, Cecillon S, Warne BM, Prestat E, Jansson JK, Vogel TM. Microbial ecology of chlorinated solvent biodegradation. Environmental Microbiology. PMID 24517489 DOI: 10.1111/1462-2920.12413  1
2014 Mathieu A, Vogel TM, Simonet P. The future of skin metagenomics. Research in Microbiology. 165: 69-76. PMID 24361423 DOI: 10.1016/J.Resmic.2013.12.002  1
2014 Delmont TO, Francioli D, Jacquesson S, Laoudi S, Mathieu A, Nesme J, Ceccherini MT, Nannipieri P, Simonet P, Vogel TM. Microbial community development and unseen diversity recovery in inoculated sterile soil Biology and Fertility of Soils. DOI: 10.1007/S00374-014-0925-8  1
2013 Larose C, Dommergue A, Vogel TM. The dynamic arctic snow pack: an unexplored environment for microbial diversity and activity. Biology. 2: 317-30. PMID 24832663 DOI: 10.3390/Biology2010317  1
2013 Larose C, Prestat E, Cecillon S, Berger S, Malandain C, Lyon D, Ferrari C, Schneider D, Dommergue A, Vogel TM. Interactions between snow chemistry, mercury inputs and microbial population dynamics in an Arctic snowpack. Plos One. 8: e79972. PMID 24282515 DOI: 10.1371/Journal.Pone.0079972  1
2013 Jacquiod S, Franqueville L, Cécillon S, Vogel TM, Simonet P. Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach. Plos One. 8: e79699. PMID 24278158 DOI: 10.1371/Journal.Pone.0079699  1
2013 Bowman JS, Larose C, Vogel TM, Deming JW. Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere. Environmental Microbiology Reports. 5: 575-82. PMID 23864572 DOI: 10.1111/1758-2229.12047  1
2013 Mathieu A, Delmont TO, Vogel TM, Robe P, Nalin R, Simonet P. Life on human surfaces: skin metagenomics. Plos One. 8: e65288. PMID 23776466 DOI: 10.1371/Journal.Pone.0065288  1
2013 Delmont TO, Simonet P, Vogel TM. Mastering methodological pitfalls for surviving the metagenomic jungle. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 744-54. PMID 23757040 DOI: 10.1002/Bies.201200155  1
2013 Le Digabel Y, Demanèche S, Benoit Y, Vogel TM, Fayolle-Guichard F. Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer. Applied Microbiology and Biotechnology. 97: 10531-9. PMID 23474617 DOI: 10.1007/S00253-013-4803-3  1
2013 Larose C, Dommergue A, Vogel TM. Microbial nitrogen cycling in Arctic snowpacks Environmental Research Letters. 8. DOI: 10.1088/1748-9326/8/3/035004  1
2012 Delmont TO, Simonet P, Vogel TM. Describing microbial communities and performing global comparisons in the 'omic era. The Isme Journal. 6: 1625-8. PMID 22717882 DOI: 10.1038/Ismej.2012.55  1
2012 Dugat-Bony E, Biderre-Petit C, Jaziri F, David MM, Denonfoux J, Lyon DY, Richard JY, Curvers C, Boucher D, Vogel TM, Peyretaillade E, Peyret P. In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microbial Biotechnology. 5: 642-53. PMID 22432919 DOI: 10.1111/J.1751-7915.2012.00339.X  1
2012 Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM. Structure, fluctuation and magnitude of a natural grassland soil metagenome. The Isme Journal. 6: 1677-87. PMID 22297556 DOI: 10.1038/Ismej.2011.197  1
2011 Gilbert JA, O'Dor R, King N, Vogel TM. The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist. Microbial Informatics and Experimentation. 1: 5. PMID 22587826 DOI: 10.1186/2042-5783-1-5  0.01
2011 Delmont TO, Robe P, Clark I, Simonet P, Vogel TM. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86: 397-400. PMID 21723887 DOI: 10.1016/J.Mimet.2011.06.013  1
2011 Monier JM, Demanèche S, Delmont TO, Mathieu A, Vogel TM, Simonet P. Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology. 14: 229-35. PMID 21601510 DOI: 10.1016/J.Mib.2011.04.010  1
2011 Delmont TO, Malandain C, Prestat E, Larose C, Monier JM, Simonet P, Vogel TM. Metagenomic mining for microbiologists. The Isme Journal. 5: 1837-43. PMID 21593798 DOI: 10.1038/Ismej.2011.61  1
2011 Gilbert J, O'Dor R, Vogel T. Survey data are still vital to science Nature. 469: 162. PMID 21228857 DOI: 10.1038/469162A  1
2011 Delmont TO, Robe P, Cecillon S, Clark IM, Constancias F, Simonet P, Hirsch PR, Vogel TM. Accessing the soil metagenome for studies of microbial diversity. Applied and Environmental Microbiology. 77: 1315-24. PMID 21183646 DOI: 10.1128/Aem.01526-10  1
2011 Delmont TO, Franqueville L, Jacquiod S, Simonet P, Vogel TM. Soil Metagenomic Exploration of the Rare Biosphere Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 287-298. DOI: 10.1002/9781118010518.ch33  1
2010 Héry M, Sanguin H, Perez Fabiel S, Lefebvre X, Vogel TM, Paul E, Alfenore S. Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. Water Research. 44: 6133-43. PMID 20673948 DOI: 10.1016/J.Watres.2010.07.003  1
2010 Pontiroli A, Ceccherini MT, Poté J, Wildi W, Kay E, Nannipieri P, Vogel TM, Simonet P, Monier JM. Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. Research in Microbiology. 161: 326-34. PMID 20493252 DOI: 10.1016/J.Resmic.2010.04.009  1
2010 Lyon DY, Monier JM, Dupraz S, Freissinet C, Simonet P, Vogel TM. Integrity and biological activity of DNA after UV exposure. Astrobiology. 10: 285-92. PMID 20446869 DOI: 10.1089/Ast.2009.0359  1
2010 Nemir A, David MM, Perrussel R, Sapkota A, Simonet P, Monier JM, Vogel TM. Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Chemosphere. 80: 600-7. PMID 20444493 DOI: 10.1016/J.Chemosphere.2010.03.036  1
2010 Malandain C, Fayolle-Guichard F, Vogel TM. Cytochromes P450-mediated degradation of fuel oxygenates by environmental isolates. Fems Microbiology Ecology. 72: 289-96. PMID 20337704 DOI: 10.1111/J.1574-6941.2010.00847.X  1
2010 Larose C, Berger S, Ferrari C, Navarro E, Dommergue A, Schneider D, Vogel TM. Microbial sequences retrieved from environmental samples from seasonal arctic snow and meltwater from Svalbard, Norway. Extremophiles : Life Under Extreme Conditions. 14: 205-12. PMID 20066448 DOI: 10.1007/S00792-009-0299-2  1
2010 Sapkota AR, Berger S, Vogel TM. Human pathogens abundant in the bacterial metagenome of cigarettes. Environmental Health Perspectives. 118: 351-6. PMID 20064769 DOI: 10.1289/Ehp.0901201  1
2010 Poté J, Teresa Ceccherini M, Rosselli W, Wildi W, Simonet P, Vogel TM. Leaching and transformability of transgenic DNA in unsaturated soil columns. Ecotoxicology and Environmental Safety. 73: 67-72. PMID 19828198 DOI: 10.1016/J.Ecoenv.2009.09.009  1
2010 Lyon DY, Buret F, Vogel TM, Monier JM. Is resistance futile? Changing external resistance does not improve microbial fuel cell performance. Bioelectrochemistry (Amsterdam, Netherlands). 78: 2-7. PMID 19783225 DOI: 10.1016/J.Bioelechem.2009.09.001  1
2010 Lyon DY, Pivetal J, Blanchard L, Vogel TM. Bioremediation via in situ electrotransformation Bioremediation Journal. 14: 109-119. DOI: 10.1080/10889861003767092  1
2009 Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM. Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco. Applied and Environmental Microbiology. 75: 3314-22. PMID 19329660 DOI: 10.1128/Aem.02632-08  1
2009 Poté J, Mavingui P, Navarro E, Rosselli W, Wildi W, Simonet P, Vogel TM. Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains. Chemosphere. 75: 498-504. PMID 19171370 DOI: 10.1016/J.Chemosphere.2008.12.048  1
2009 Demanèche S, Philippot L, David MM, Navarro E, Vogel TM, Simonet P. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Applied and Environmental Microbiology. 75: 534-7. PMID 19011059 DOI: 10.1128/Aem.01706-08  1
2009 Demanèche S, David MM, Navarro E, Simonet P, Vogel TM. Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods. 76: 105-7. PMID 18922230 DOI: 10.1016/J.Mimet.2008.09.009  1
2009 Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3  1
2009 Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119  1
2008 Smalla K, Tebbe CC, van Elsas JD, Vogel TM. Microbial community networks. Fems Microbiology Ecology. 66: 1-2. PMID 18826545 DOI: 10.1111/J.1574-6941.2008.00596.X  1
2008 van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L. The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. Trends in Biotechnology. 26: 591-601. PMID 18774191 DOI: 10.1016/J.Tibtech.2008.07.004  1
2008 Lefevre F, Robe P, Jarrin C, Ginolhac A, Zago C, Auriol D, Vogel TM, Simonet P, Nalin R. Drugs from hidden bugs: their discovery via untapped resources. Research in Microbiology. 159: 153-61. PMID 18375103 DOI: 10.1016/J.Resmic.2007.12.011  1
2008 David MM, Sapkota AR, Simonet P, Vogel TM. A novel and rapid method for synthesizing positive controls and standards for quantitative PCR. Journal of Microbiological Methods. 73: 73-7. PMID 18313777 DOI: 10.1016/J.Mimet.2008.01.001  1
2008 Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM, Simonet P. Antibiotic-resistant soil bacteria in transgenic plant fields. Proceedings of the National Academy of Sciences of the United States of America. 105: 3957-62. PMID 18292221 DOI: 10.1073/Pnas.0800072105  1
2008 Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D. Strategy for in situ detection of natural transformation-based horizontal gene transfer events. Applied and Environmental Microbiology. 74: 1250-4. PMID 18165369 DOI: 10.1128/Aem.02185-07  1
2007 Monier JM, Bernillon D, Kay E, Faugier A, Rybalka O, Dessaux Y, Simonet P, Vogel TM. Detection of potential transgenic plant DNA recipients among soil bacteria. Environmental Biosafety Research. 6: 71-83. PMID 17961481 DOI: 10.1051/Ebr:2007036  1
2007 Pontiroli A, Simonet P, Frostegard A, Vogel TM, Monier JM. Fate of transgenic plant DNA in the environment. Environmental Biosafety Research. 6: 15-35. PMID 17961478 DOI: 10.1051/Ebr:2007037  1
2007 Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM, Simonet P. Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms. Plos One. 2: e1055. PMID 17957239 DOI: 10.1371/Journal.Pone.0001055  1
2007 Smalla K, Vogel TM. Presentation of the thematic issue on horizontal gene transfer Environmental Biosafety Research. 6: 1-2. DOI: 10.1051/Ebr:2007038  1
2007 Ceccherini MT, Ascher J, Pietramellara G, Vogel TM, Nannipieri P. Vertical advection of extracellular DNA by water capillarity in soil columns Soil Biology and Biochemistry. 39: 158-163. DOI: 10.1016/J.Soilbio.2006.07.006  1
2006 Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y, Grundmann GL. Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Applied and Environmental Microbiology. 72: 4302-12. PMID 16751545 DOI: 10.1128/Aem.02686-05  1
2006 Boubakri H, Beuf M, Simonet P, Vogel TM. Development of metagenomic DNA shuffling for the construction of a xenobiotic gene. Gene. 375: 87-94. PMID 16690231 DOI: 10.1016/J.Gene.2006.02.027  1
2006 Cérémonie H, Buret F, Simonet P, Vogel TM. Natural Pseudomonas sp. strain N3 in artificial soil microcosms. Applied and Environmental Microbiology. 72: 2385-9. PMID 16597934 DOI: 10.1128/Aem.72.4.2385-2389.2006  1
2006 Cérémonie H, Boubakri H, Mavingui P, Simonet P, Vogel TM. Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+). Fems Microbiology Letters. 257: 243-52. PMID 16553860 DOI: 10.1111/J.1574-6968.2006.00188.X  1
2006 Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL. Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environmental Microbiology. 8: 289-307. PMID 16423016 DOI: 10.1111/J.1462-2920.2005.00895.X  1
2006 Nex F, Schäfer G, Côme JM, Vogel TM. A novel approach for modelling the biodegradation of chlorinated volatile organic compounds in porous aquifers | Une approche innovante pour modéliser la biodégradation des composés organochlorés volatils en aquifères poreux Comptes Rendus - Geoscience. 338: 297-306. DOI: 10.1016/J.Crte.2006.03.003  1
2005 Héry M, Herrera A, Vogel TM, Normand P, Navarro E. Effect of carbon and nitrogen input on the bacterial community structure of Neocaledonian nickel mine spoils. Fems Microbiology Ecology. 51: 333-40. PMID 16329881 DOI: 10.1016/J.Femsec.2004.09.008  1
2005 Ginolhac A, Jarrin C, Robe P, Perrière G, Vogel TM, Simonet P, Nalin R. Type I polyketide synthases may have evolved through horizontal gene transfer. Journal of Molecular Evolution. 60: 716-25. PMID 15909225 DOI: 10.1007/S00239-004-0161-1  1
2005 Bertrand H, Poly F, Van VT, Lombard N, Nalin R, Vogel TM, Simonet P. High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction. Journal of Microbiological Methods. 62: 1-11. PMID 15823390 DOI: 10.1016/J.Mimet.2005.01.003  1
2004 Cérémonie H, Buret F, Simonet P, Vogel TM. Isolation of lightning-competent soil bacteria. Applied and Environmental Microbiology. 70: 6342-6. PMID 15466589 DOI: 10.1128/Aem.70.10.6342-6346.2004  1
2004 Ginolhac A, Jarrin C, Gillet B, Robe P, Pujic P, Tuphile K, Bertrand H, Vogel TM, Perrière G, Simonet P, Nalin R. Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Applied and Environmental Microbiology. 70: 5522-7. PMID 15345440 DOI: 10.1128/Aem.70.9.5522-5527.2004  1
2003 Kay E, Chabrillat G, Vogel TM, Simonet P. Intergeneric transfer of chromosomal and conjugative plasmid genes between Ralstonia solanacearum and Acinetobacter sp. BD413. Molecular Plant-Microbe Interactions : Mpmi. 16: 74-82. PMID 12580284 DOI: 10.1094/Mpmi.2003.16.1.74  1
2003 Ceccherini M, Poté J, Kay E, Van VT, Maréchal J, Pietramellara G, Nannipieri P, Vogel TM, Simonet P. Degradation and transformability of DNA from transgenic leaves. Applied and Environmental Microbiology. 69: 673-8. PMID 12514059 DOI: 10.1128/Aem.69.1.673-678.2003  1
2003 Robe P, Nalin R, Capellano C, Vogel TM, Simonet P. Extraction of DNA from soil European Journal of Soil Biology. 39: 183-190. DOI: 10.1016/S1164-5563(03)00033-5  1
2003 Poté J, Ceccherini MT, Van VT, Rosselli W, Wildi W, Simonet P, Vogel TM. Fate and transport of antibiotic resistance genes in saturated soil columns European Journal of Soil Biology. 39: 65-71. DOI: 10.1016/S1164-5563(03)00003-7  1
2003 Dechesne A, Pallud C, Debouzie D, Flandrois JP, Vogel TM, Gaudet JP, Grundmann GL. A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil Soil Biology and Biochemistry. 35: 1537-1546. DOI: 10.1016/S0038-0717(03)00243-8  1
2002 Kay E, Vogel TM, Bertolla F, Nalin R, Simonet P. In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria. Applied and Environmental Microbiology. 68: 3345-51. PMID 12089013 DOI: 10.1128/Aem.68.7.3345-3351.2002  1
2002 Kay E, Bertolla F, Vogel TM, Simonet P. Opportunistic colonization of Ralstonia solanacearum-infected plants by Acinetobacter sp. and its natural competence development. Microbial Ecology. 43: 291-7. PMID 12037607 DOI: 10.1007/S00248-002-2007-Y  1
2001 Amellal N, Portal JM, Vogel T, Berthelin J. Distribution and location of polycyclic aromatic hydrocarbons (PAHs) and PAH-degrading bacteria within polluted soil aggregates Biodegradation. 12: 49-57. PMID 11693295 DOI: 10.1023/A:1011909107858  1
2001 Demanèche S, Bertolla F, Buret F, Nalin R, Sailland A, Auriol P, Vogel TM, Simonet P. Laboratory-scale evidence for lightning-mediated gene transfer in soil. Applied and Environmental Microbiology. 67: 3440-4. PMID 11472916 DOI: 10.1128/Aem.67.8.3440-3444.2001  1
1999 Nalin R, Simonet P, Vogel TM, Normand P. Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. International Journal of Systematic Bacteriology. 49: 19-23. PMID 10028243 DOI: 10.1099/00207713-49-1-19  1
1999 Fass S, Vogel TM, Vaudrey H, Baud-Grasset F, Block JC. Prediction of chemicals biodegradation in soils: A tentative of modeling Physics and Chemistry of the Earth, Part B: Hydrology, Oceans and Atmosphere. 24: 495-499. DOI: 10.1016/S1464-1909(99)00036-2  1
1999 Richard JY, Vogel TM. Characterization of a soil bacterial consortium capable of degrading diesel fuel International Biodeterioration and Biodegradation. 44: 93-100. DOI: 10.1016/S0964-8305(99)00062-1  1
1997 Ganaye VA, Keiding K, Vogel TM, Viriot ML, Block JC. Evaluation of soil organic matter polarity by pyrene fluorescence spectrum variations Environmental Science and Technology. 31: 2701-2706. DOI: 10.1021/Es960705U  1
1996 Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F, Truffaut N, Normand P, Vogel TM, Simonet P. Isolation and characterization of a novel gamma-hexachlorocyclohexane-degrading bacterium. Journal of Bacteriology. 178: 6049-55. PMID 8830705 DOI: 10.1128/Jb.178.20.6049-6055.1996  1
1996 Vogel TM. Bioaugmentation as a soil bioremediation approach. Current Opinion in Biotechnology. 7: 311-6. PMID 8785436 DOI: 10.1016/S0958-1669(96)80036-X  1
1995 Alvarez PJJ, Vogel TM. Degradation of BTEX and their aerobic metabolites by indigenous microorganisms under nitrate reducing conditions Water Science and Technology. 31: 15-28. DOI: 10.1016/0273-1223(95)00151-C  1
1994 Assaf-Anid N, Hayes KF, Vogel TM. Reduction dechlorination of carbon tetrachloride by cobalamin(II) in the presence of dithiothreitol: mechanistic study, effect of redox potential and pH. Environmental Science & Technology. 28: 246-52. PMID 22176169 DOI: 10.1021/Es00051A010  1
1994 Petrovskis EA, Vogel TM, Adriaens P. Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. Fems Microbiology Letters. 121: 357-63. PMID 7926693 DOI: 10.1111/J.1574-6968.1994.Tb07126.X  1
1994 Alvarez PJJ, Anid PJ, Vogel TM. Kinetics of toluene degradation by denitrifying aquifer microorganisms Journal of Environmental Engineering (United States). 120: 1327-1336. DOI: 10.1061/(Asce)0733-9372(1994)120:5(1327)  1
1994 Assaf-Anid N, Hayes KF, Vogel TM. Reductive dechlorination of carbon tetrachloride by cobalamin(II) in the presence of dithiothreitol: Mechanistic study, effect of redox potential and pH Environmental Science and Technology. 28: 246-252.  1
1993 Shreve GS, Vogel TM. Comparison of substrate utilization and growth kinetics between immobilized and suspended Pseudomonas cells. Biotechnology and Bioengineering. 41: 370-9. PMID 18609562 DOI: 10.1002/Bit.260410312  1
1993 Anid PJ, Ravest-Webster BP, Vogel TM. Effect of hydrogen peroxide on the biodegradation of PCBs in anaerobically dechlorinated river sediments. Biodegradation. 4: 241-8. PMID 7764921 DOI: 10.1007/Bf00695972  1
1993 Anid PJ, Alvarez PJJ, Vogel TM. Biodegradation of monoaromatic hydrocarbons in aquifer columns amended with hydrogen peroxide and nitrate Water Research. 27: 685-691. DOI: 10.1016/0043-1354(93)90178-K  1
1992 Assaf-Anid N, Nies L, Vogel TM. Reductive dechlorination of a polychlorinated biphenyl congener and hexachlorobenzene by vitamin B12. Applied and Environmental Microbiology. 58: 1057-60. PMID 1575479 DOI: 10.1128/Aem.58.3.1057-1060.1992  1
1992 Montgomery L, Vogel TM. Dechlorination of 2,3,5,6-tetrachlorobiphenyl by a phototrophic enrichment culture. Fems Microbiology Letters. 73: 247-50. PMID 1426987 DOI: 10.1016/0378-1097(92)90638-5  1
1992 Chen Y‐, Abriola LM, Alvarez PJJ, Anid PJ, Vogel TM. Modeling transport and biodegradation of benzene and toluene in sandy aquifer material: Comparisons With experimental measurements Water Resources Research. 28: 1833-1847. DOI: 10.1029/92Wr00667  1
1991 Shrove GS, Olsen RH, Vogel TM. Development of pure culture biofilms of P. putida on solid supports. Biotechnology and Bioengineering. 37: 512-8. PMID 18600638 DOI: 10.1002/Bit.260370604  1
1991 Nies L, Vogel TM. Identification of the proton source for the microbial reductive dechlorination of 2,3,4,5,6-pentachlorobiphenyl. Applied and Environmental Microbiology. 57: 2771-4. PMID 16348557 DOI: 10.1128/Aem.57.9.2771-2774.1991  1
1991 Fathepure BZ, Vogel TM. Complete degradation of polychlorinated hydrocarbons by a two-stage biofilm reactor. Applied and Environmental Microbiology. 57: 3418-22. PMID 1785918 DOI: 10.1128/Aem.57.12.3418-3422.1991  1
1991 Alvarez PJ, Vogel TM. Substrate interactions of benzene, toluene, and para-xylene during microbial degradation by pure cultures and mixed culture aquifer slurries. Applied and Environmental Microbiology. 57: 2981-5. PMID 1746958 DOI: 10.1128/Aem.57.10.2981-2985.1991  1
1991 Alvarez PJ, Anid PJ, Vogel TM. Kinetics of aerobic biodegradation of benzene and toluene in sandy aquifer material. Biodegradation. 2: 43-51. PMID 1368476 DOI: 10.1007/Bf00122424  1
1991 Abriola LM, Chen YM, Vogel TM. Investigation and prediction of the biodegradation of benzene, toluene, and xylene (BTX) in sandy aquifer materials National Conference Publication - Institution of Engineers, Australia. 2: 429-434.  1
1991 Vogel TM. Mechanisms and applications of sequential anaerobic/aerobic biodegradation of chlorinated organic compounds International Conference On Environmental Pollution. 764-771.  1
1990 Nies L, Vogel TM. Effects of organic substrates on dechlorination of aroclor 1242 in anaerobic sediments. Applied and Environmental Microbiology. 56: 2612-7. PMID 16348270 DOI: 10.1128/Aem.56.9.2612-2617.1990  1
1990 Anid PJ, Vogel TM. Potential of indigenous and added microorganisms for degrading benzene, toluene and xylene under different environmental conditions National Conference On Environmental Engineering. 382-389.  1
1988 Reinhard M, Vogel TM. Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. Reply to comments. Environmental Science & Technology. 22: 231. PMID 19995031 DOI: 10.1021/Es00167A020  1
1987 Vogel TM, Reinhard M. Correction. Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. Environmental Science & Technology. 21: 512. PMID 22296145 DOI: 10.1021/Es00159A606  1
1987 Vogel TM, Criddle CS, McCarty PL. ES Critical Reviews: Transformations of halogenated aliphatic compounds. Environmental Science & Technology. 21: 722-36. PMID 19995052 DOI: 10.1021/Es00162A001  1
1987 Grbi?-Gali? D, Vogel TM. Transformation of toluene and benzene by mixed methanogenic cultures. Applied and Environmental Microbiology. 53: 254-60. PMID 3105454 DOI: 10.1128/Aem.53.2.254-260.1987  1
1987 Vogel TM, McCarty PL. Abiotic and biotic transformations of 1,1,1-trichloroethane under methanogenic conditions Environmental Science and Technology. 21: 1208-1213. DOI: 10.1021/Es00165A008  1
1987 Vogel TM, McCarty PL. Rate of abiotic formation of 1,1-dichloroethylene from 1,1,1-trichloroethane in groundwater Journal of Contaminant Hydrology. 1: 299-308. DOI: 10.1016/0169-7722(87)90010-6  1
1987 Vogel TM, Criddle CS, McCarty PL. Transformations of halogenated aliphatic compounds. Oxidation, reduction, substitution, and dehydrohalogenation reactions occur abiotically or in microbial and mammalian systems Environmental Science and Technology. 21: 722-736.  1
1986 Vogel TM, Reinhard M. Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. Environmental Science & Technology. 20: 992-7. PMID 22257396 DOI: 10.1021/es00152a004  1
1986 Vogel TM, Grbìc-Galìc D. Incorporation of Oxygen from Water into Toluene and Benzene during Anaerobic Fermentative Transformation. Applied and Environmental Microbiology. 52: 200-2. PMID 16347109 DOI: 10.1128/Aem.52.1.200-202.1986  1
1985 Vogel TM, McCarty PL. Biotransformation of tetrachloroethylene to trichloroethylene, dichloroethylene, vinyl chloride, and carbon dioxide under methanogenic conditions. Applied and Environmental Microbiology. 49: 1080-3. PMID 3923927 DOI: 10.1128/Aem.49.5.1080-1083.1985  1
1982 Vogel TM, Oremland RS, Kvenvolden KA. Low-temperature formation of hydrocarbon gases in San Francisco Bay sediment (California, U.S.A.) Chemical Geology. 37: 289-298. DOI: 10.1016/0009-2541(82)90084-5  1
1981 Kvenvolden KA, Vogel TM, Gardner JV. Geochemical prospecting for hydrocarbons in the outer continental shelf, Southern Bering Sea, Alaska Journal of Geochemical Exploration. 14: 209-219. DOI: 10.1016/0375-6742(81)90113-8  1
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