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Sophie Abby, Ph.D. - Publications

Affiliations: 
LBBE, UMR5558 LBBE, UMR5558, Université Lyon 1, Université de Lyon, Villeurbanne, Auvergne-Rhône-Alpes, France 
Area:
Molecular Evolution; Phylogenetics
Website:
http://lbbe.univ-lyon1.fr/-Abby-Sophie-.html?lang=en
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kazemzadeh K, Pelosi L, Chenal C, Chobert SC, Hajj Chehade M, Jullien M, Flandrin L, Schmitt W, He Q, Bouvet E, Jarzynka M, Varoquaux N, Junier I, Pierrel F, Abby SS. Diversification of Ubiquinone Biosynthesis via Gene Duplications, Transfers, Losses, and Parallel Evolution. Molecular Biology and Evolution. 40. PMID 37788637 DOI: 10.1093/molbev/msad219  0.397
2020 Abby SS, Kerou M, Schleper C. Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments. Mbio. 11. PMID 33051370 DOI: 10.1128/mBio.02371-20  0.317
2019 Denise R, Abby SS, Rocha EPC. Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility. Plos Biology. 17: e3000390. PMID 31323028 DOI: 10.1371/journal.pbio.3000390  0.342
2018 Pozzi AC, Bautista-Guerrero HH, Abby SS, Herrera-Belaroussi A, Abrouk D, Normand P, Menu F, Fernandez MP. Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size. Systematic and Applied Microbiology. PMID 29653822 DOI: 10.1016/j.syapm.2018.03.002  0.407
2018 Abby SS, Melcher M, Kerou M, Krupovic M, Stieglmeier M, Rossel C, Pfeifer K, Schleper C. Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome. Frontiers in Microbiology. 9: 28. PMID 29434576 DOI: 10.3389/fmicb.2018.00028  0.41
2016 Kerou M, Offre P, Valledor L, Abby SS, Melcher M, Nagler M, Weckwerth W, Schleper C. Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers. Proceedings of the National Academy of Sciences of the United States of America. PMID 27864514 DOI: 10.1073/pnas.1601212113  0.34
2016 Behdenna A, Pothier J, Abby SS, Lambert A, Achaz G. Testing for Independence between Evolutionary Processes. Systematic Biology. PMID 27208890 DOI: 10.1093/sysbio/syw004  0.308
2012 Szöllosi GJ, Boussau B, Abby SS, Tannier E, Daubin V. Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations. Proceedings of the National Academy of Sciences of the United States of America. 109: 17513-8. PMID 23043116 DOI: 10.1073/Pnas.1202997109  0.713
2012 Daubin V, Abby S. [Healing the tree of life with lateral gene transfers]. MéDecine Sciences : M/S. 28: 695-8. PMID 22920867 DOI: 10.1051/Medsci/2012288007  0.747
2012 Abby SS, Tannier E, Gouy M, Daubin V. Lateral gene transfer as a support for the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 109: 4962-7. PMID 22416123 DOI: 10.1073/Pnas.1116871109  0.699
2010 Abby SS, Tannier E, Gouy M, Daubin V. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. Bmc Bioinformatics. 11: 324. PMID 20550700 DOI: 10.1186/1471-2105-11-324  0.682
2007 Abby S, Daubin V. Comparative genomics and the evolution of prokaryotes. Trends in Microbiology. 15: 135-41. PMID 17289390 DOI: 10.1016/J.Tim.2007.01.007  0.676
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