| Year |
Citation |
Score |
| 2021 |
Quinlan JR, O'Leary SJ, Fields AT, Benavides M, Stumpf E, Carcamo R, Cruz J, Lewis D, Wade B, Amato G, Kolokotronis SO, Clementi GM, Chapman DD. Using fisher-contributed secondary fins to fill critical shark-fisheries data gaps. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 33538362 DOI: 10.1111/cobi.13688 |
0.541 |
|
| 2020 |
Rios R, Reyes J, Carvajal LP, Rincon S, Panesso D, Echeverri AM, Dinh A, Kolokotronis SO, Narechania A, Tran TT, Munita JM, Murray BE, Planet PJ, Arias CA, Diaz L. Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure. Scientific Reports. 10: 5636. PMID 32221315 DOI: 10.1038/S41598-020-62371-7 |
0.349 |
|
| 2019 |
Dixit A, Freschi L, Vargas R, Calderon R, Sacchettini J, Drobniewski F, Galea JT, Contreras C, Yataco R, Zhang Z, Lecca L, Kolokotronis SO, Mathema B, Farhat MR. Whole genome sequencing identifies bacterial factors affecting transmission of multidrug-resistant tuberculosis in a high-prevalence setting. Scientific Reports. 9: 5602. PMID 30944370 DOI: 10.1038/S41598-019-41967-8 |
0.308 |
|
| 2019 |
Botelho AMN, Cerqueira E Costa MO, Moustafa AM, Beltrame CO, Ferreira FA, Côrtes MF, Costa BSS, Silva DNS, Bandeira PT, Lima NCB, Souza RC, de Almeida LGP, Vasconcelos ATR, Narechania A, Ryan C, ... ... Kolokotronis SO, et al. Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination. Frontiers in Microbiology. 10: 82. PMID 30873127 DOI: 10.3389/Fmicb.2019.00082 |
0.391 |
|
| 2019 |
Tufts DM, Hart TM, Chen GF, Kolokotronis SO, Diuk-Wasser MA, Yi-Pin L. Outer surface protein polymorphisms linked to host-spirochete association in Lyme borreliae. Molecular Microbiology. PMID 30666741 DOI: 10.1111/Mmi.14209 |
0.315 |
|
| 2018 |
Nelson CW, Sibley SD, Kolokotronis SO, Hamer GL, Newman CM, Anderson TK, Walker ED, Kitron UD, Brawn JD, Ruiz MO, Goldberg TL. Selective constraint and adaptive potential of West Nile virus within and among naturally infected avian hosts and mosquito vectors. Virus Evolution. 4: vey013. PMID 29942654 DOI: 10.1093/Ve/Vey013 |
0.384 |
|
| 2018 |
Zolnik CP, Falco RC, Daniels TJ, Kolokotronis SO. Transient influence of blood meal and natural environment on blacklegged tick bacterial communities. Ticks and Tick-Borne Diseases. PMID 29409718 DOI: 10.1016/J.Ttbdis.2018.01.007 |
0.742 |
|
| 2018 |
Rios R, Reyes J, Carvajal LP, Kolokotronis S, Planet P, Narechania A, Munita J, Arias C, Diaz L. 1232. Phylogenomics of Enterococcus faecium From South America: Revisiting Worldwide VRE Population Structure Open Forum Infectious Diseases. 5: S374-S374. DOI: 10.1093/Ofid/Ofy210.1065 |
0.375 |
|
| 2017 |
Anco C, Kolokotronis SO, Henschel P, Cunningham SW, Amato G, Hekkala E. Historical mitochondrial diversity in African leopards (Panthera pardus) revealed by archival museum specimens. Mitochondrial Dna. Part a, Dna Mapping, Sequencing, and Analysis. 1-19. PMID 28423965 DOI: 10.1080/24701394.2017.1307973 |
0.783 |
|
| 2016 |
Brown TS, Narechania A, Walker JR, Planet PJ, Bifani PJ, Kolokotronis SO, Kreiswirth BN, Mathema B. Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999-2009. Bmc Genomics. 17: 947. PMID 27871225 DOI: 10.1186/s12864-016-3298-6 |
0.316 |
|
| 2016 |
Escalera-Zamudio M, Rojas-Anaya E, Kolokotronis SO, Taboada B, Loza-Rubio E, Méndez-Ojeda ML, Arias CF, Osterrieder N, Greenwood AD. Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses. Mbio. 7. PMID 27834200 DOI: 10.1128/Mbio.01425-16 |
0.653 |
|
| 2016 |
Narechania A, Baker R, DeSalle R, Mathema B, Kolokotronis SO, Kreiswirth B, Planet PJ. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets. Gigascience. 5: 44. PMID 27776538 DOI: 10.1186/S13742-016-0152-3 |
0.663 |
|
| 2016 |
Kolokotronis SO, Foox J, Rosenfeld JA, Brugler MR, Reeves D, Benoit JB, Booth W, Robison G, Steffen M, Sakas Z, Palli SR, Schal C, Richards S, Narechania A, Baker RH, et al. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial Dna. Part B, Resources. 1: 425-427. PMID 27617305 DOI: 10.1080/23802359.2016.1180268 |
0.774 |
|
| 2016 |
Zolnik CP, Prill RJ, Falco RC, Daniels TJ, Kolokotronis SO. Microbiome changes through ontogeny of a tick pathogen vector. Molecular Ecology. PMID 27588381 DOI: 10.1111/Mec.13832 |
0.753 |
|
| 2016 |
Gómez A, Kolokotronis SO. Genetic identification of mammalian meal source in dung beetle gut contents. Mitochondrial Dna. Part a. Dna Mapping, Sequencing, and Analysis. 1-4. PMID 27159706 DOI: 10.3109/24701394.2016.1155120 |
0.429 |
|
| 2016 |
Dowell SA, Wood JP, Campbell TS, Kolokotronis SO, Hekkala ER. Combining genetic and distributional approaches to sourcing introduced species: a case study on the Nile monitor (Varanus niloticus) in Florida. Royal Society Open Science. 3: 150619. PMID 27152204 DOI: 10.1098/Rsos.150619 |
0.736 |
|
| 2016 |
Alfano N, Kolokotronis SO, Tsangaras K, Roca AL, Xu W, Eiden MV, Greenwood AD. Erratum for Alfano et al., Episodic Diversifying Selection Shaped the Genomes of Gibbon Ape Leukemia Virus and Related Gammaretroviruses. Journal of Virology. 90: 4254. PMID 27022099 DOI: 10.1128/Jvi.00210-16 |
0.662 |
|
| 2016 |
Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... Kolokotronis SO, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164 |
0.768 |
|
| 2015 |
Alfano N, Kolokotronis SO, Tsangaras K, Roca AL, Xu W, Eiden MV, Greenwood AD. Episodic diversifying selection shaped the genomes of gibbon ape leukemia virus and related gammaretroviruses. Journal of Virology. PMID 26637454 DOI: 10.1128/Jvi.02745-15 |
0.702 |
|
| 2015 |
Dowell SA, Portik DM, de Buffrénil V, Ineich I, Greenbaum E, Kolokotronis SO, Hekkala ER. Molecular data from contemporary and historical collections reveal a complex story of cryptic diversification in the Varanus (Polydaedalus) niloticus Species Group. Molecular Phylogenetics and Evolution. PMID 26475616 DOI: 10.1016/J.Ympev.2015.10.004 |
0.744 |
|
| 2015 |
Zolnik CP, Falco RC, Kolokotronis SO, Daniels TJ. No Observed Effect of Landscape Fragmentation on Pathogen Infection Prevalence in Blacklegged Ticks (Ixodes scapularis) in the Northeastern United States. Plos One. 10: e0139473. PMID 26430734 DOI: 10.1371/Journal.Pone.0139473 |
0.74 |
|
| 2015 |
Ammazzalorso AD, Zolnik CP, Daniels TJ, Kolokotronis SO. To beat or not to beat a tick: comparison of DNA extraction methods for ticks (Ixodes scapularis). Peerj. 3: e1147. PMID 26290800 DOI: 10.7717/Peerj.1147 |
0.734 |
|
| 2015 |
Ganu RS, Ishida Y, Koutmos M, Kolokotronis SO, Roca AL, Garrow TA, Schook LB. Evolutionary Analyses and Natural Selection of Betaine-Homocysteine S-Methyltransferase (BHMT) and BHMT2 Genes. Plos One. 10: e0134084. PMID 26213999 DOI: 10.1371/Journal.Pone.0134084 |
0.631 |
|
| 2015 |
Dowell SA, de Buffrénil V, Kolokotronis SO, Hekkala ER. Fine-scale genetic analysis of the exploited Nile monitor (Varanus niloticus) in Sahelian Africa. Bmc Genetics. 16: 32. PMID 25884730 DOI: 10.1186/S12863-015-0188-X |
0.726 |
|
| 2015 |
Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, et al. Evolution of the indoor biome. Trends in Ecology & Evolution. 30: 223-32. PMID 25770744 DOI: 10.1016/J.Tree.2015.02.001 |
0.343 |
|
| 2015 |
DeSalle R, Kolokotronis SO. Changes in the Mitogenome Announcement manuscript category. Mitochondrial Dna. 26: 1. PMID 25693712 DOI: 10.3109/19401736.2015.1013392 |
0.57 |
|
| 2014 |
Tsangaras K, Kolokotronis SO, Ulrich RG, Morand S, Michaux J, Greenwood AD. Negative purifying selection drives prion and doppel protein evolution. Journal of Molecular Evolution. 79: 12-20. PMID 25038839 DOI: 10.1007/S00239-014-9632-1 |
0.564 |
|
| 2014 |
Leite RN, Kolokotronis SO, Almeida FC, Werneck FP, Rogers DS, Weksler M. In the wake of invasion: tracing the historical biogeography of the South American cricetid radiation (Rodentia, Sigmodontinae). Plos One. 9: e100687. PMID 24963664 DOI: 10.1371/Journal.Pone.0100687 |
0.602 |
|
| 2014 |
Benson MA, Ohneck EA, Ryan C, Alonzo F, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Molecular Microbiology. 93: 664-81. PMID 24962815 DOI: 10.1111/Mmi.12682 |
0.342 |
|
| 2014 |
Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117 |
0.767 |
|
| 2014 |
Scheel DM, Slater GJ, Kolokotronis SO, Potter CW, Rotstein DS, Tsangaras K, Greenwood AD, Helgen KM. Biogeography and taxonomy of extinct and endangered monk seals illuminated by ancient DNA and skull morphology. Zookeys. 1-33. PMID 24899841 DOI: 10.3897/Zookeys.409.6244 |
0.64 |
|
| 2013 |
Mendez M, Jefferson TA, Kolokotronis SO, Krützen M, Parra GJ, Collins T, Minton G, Baldwin R, Berggren P, Särnblad A, Amir OA, Peddemors VM, Karczmarski L, Guissamulo A, Smith B, et al. Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters? Molecular Ecology. 22: 5936-48. PMID 24268046 DOI: 10.1111/Mec.12535 |
0.717 |
|
| 2012 |
Piaggio AJ, Shriner SA, VanDalen KK, Franklin AB, Anderson TD, Kolokotronis SO. Molecular surveillance of low pathogenic avian influenza viruses in wild birds across the United States: inferences from the hemagglutinin gene. Plos One. 7: e50834. PMID 23226543 DOI: 10.1371/Journal.Pone.0050834 |
0.338 |
|
| 2012 |
Doukakis P, Pikitch EK, Rothschild A, DeSalle R, Amato G, Kolokotronis SO. Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation. Plos One. 7: e40907. PMID 22848410 DOI: 10.1371/Journal.Pone.0040907 |
0.762 |
|
| 2012 |
Smith KM, Anthony SJ, Switzer WM, Epstein JH, Seimon T, Jia H, Sanchez MD, Huynh TT, Galland GG, Shapiro SE, Sleeman JM, McAloose D, Stuchin M, Amato G, Kolokotronis SO, et al. Zoonotic viruses associated with illegally imported wildlife products. Plos One. 7: e29505. PMID 22253731 DOI: 10.1371/Journal.Pone.0029505 |
0.559 |
|
| 2012 |
Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/Gbe/Evr121 |
0.714 |
|
| 2011 |
Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411 |
0.771 |
|
| 2011 |
Hanner R, Desalle R, Ward RD, Kolokotronis SO. The Fish Barcode of Life (FISH-BOL) special issue. Mitochondrial Dna. 22: 1-2. PMID 21980984 DOI: 10.3109/19401736.2011.598767 |
0.621 |
|
| 2011 |
Ishida Y, Oleksyk TK, Georgiadis NJ, David VA, Zhao K, Stephens RM, Kolokotronis SO, Roca AL. Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants. Plos One. 6: e20642. PMID 21701575 DOI: 10.1371/Journal.Pone.0020642 |
0.64 |
|
| 2010 |
Engstrand RC, Cibrián Tovar J, Cibrián-Jaramillo A, Kolokotronis SO. Genetic variation in avocado stem weevils Copturus aguacatae (Coleoptera: Curculionidae) in Mexico. Mitochondrial Dna. 21: 38-43. PMID 21271857 DOI: 10.3109/19401736.2010.536226 |
0.403 |
|
| 2010 |
Escalante P, Desalle R, Kolokotronis SO. The MexBOL initiative. Mitochondrial Dna. 21: 1-2. PMID 21271851 DOI: 10.3109/19401736.2010.551715 |
0.616 |
|
| 2010 |
Polani S, Roca AL, Rosensteel BB, Kolokotronis SO, Bar-Gal GK. Evolutionary dynamics of endogenous feline leukemia virus proliferation among species of the domestic cat lineage. Virology. 405: 397-407. PMID 20615520 DOI: 10.1016/J.Virol.2010.06.010 |
0.644 |
|
| 2010 |
Lowenstein JH, Burger J, Jeitner CW, Amato G, Kolokotronis SO, Gochfeld M. DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers. Biology Letters. 6: 692-5. PMID 20410032 DOI: 10.1098/Rsbl.2010.0156 |
0.491 |
|
| 2010 |
Eaton MJ, Meyers GL, Kolokotronis SO, Leslie MS, Martin AP, Amato G. Barcoding bushmeat: Molecular identification of Central African and South American harvested vertebrates Conservation Genetics. 11: 1389-1404. DOI: 10.1007/S10592-009-9967-0 |
0.651 |
|
| 2009 |
Piaggio AJ, Clark L, Franklin AB, Kolokotronis SO. Wild bird's-eye view of influenza virus A(H1N1) phylogenetic evolution. Ecohealth. 6: 346-50. PMID 20458519 DOI: 10.1007/S10393-009-0270-9 |
0.332 |
|
| 2009 |
Lowenstein JH, Amato G, Kolokotronis SO. The real maccoyii: identifying tuna sushi with DNA barcodes--contrasting characteristic attributes and genetic distances. Plos One. 4: e7866. PMID 19924239 DOI: 10.1371/Journal.Pone.0007866 |
0.625 |
|
| 2009 |
Schierwater B, Kolokotronis SO, Eitel M, DeSalle R. The Diploblast-Bilateria Sister hypothesis: parallel revolution of a nervous systems may have been a simple step. Communicative & Integrative Biology. 2: 403-5. PMID 19907700 DOI: 10.4161/Cib.2.5.8763 |
0.625 |
|
| 2009 |
Roca AL, Ishida Y, Nikolaidis N, Kolokotronis SO, Fratpietro S, Stewardson K, Hensley S, Tisdale M, Boeskorov G, Greenwood AD. Genetic variation at hair length candidate genes in elephants and the extinct woolly mammoth. Bmc Evolutionary Biology. 9: 232. PMID 19747392 DOI: 10.1186/1471-2148-9-232 |
0.717 |
|
| 2009 |
de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. Plos One. 4: e5764. PMID 19503618 DOI: 10.1371/Journal.Pone.0005764 |
0.724 |
|
| 2009 |
Schierwater B, Eitel M, Jakob W, Osigus HJ, Hadrys H, Dellaporta SL, Kolokotronis SO, Desalle R. Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis. Plos Biology. 7: e20. PMID 19175291 DOI: 10.1371/Journal.Pbio.1000020 |
0.681 |
|
| 2009 |
Schierwater B, Kolokotronis SO, Eitel M, DeSalle R. The Diploblast-Bilateria Sister hypothesis: Parallel evolution of a nervous systems may have been a simple step Communicative and Integrative Biology. 2: 403-405. DOI: 10.4161/cib.2.5.8763 |
0.544 |
|
| 2009 |
Wyatt KB, Campos PF, Gilbert MTP, Kolokotronis S, Hynes WH, DeSalle R, Ball SJ, Daszak P, MacPhee RDE, Greenwood AD. Correction: Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease Plos One. 4. DOI: 10.1371/annotation/9fbe9687-682e-4010-97e4-139b33343d34 |
0.575 |
|
| 2009 |
DeSalle R, Kolokotronis S. Mitochondrial DNA announces new fast-track manuscript category:Mitogenome Announcements Mitochondrial Dna. 20: 1-1. DOI: 10.1080/19401730902732335 |
0.604 |
|
| 2008 |
Wyatt KB, Campos PF, Gilbert MT, Kolokotronis SO, Hynes WH, DeSalle R, Ball SJ, Daszak P, MacPhee RD, Greenwood AD. Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. Plos One. 3: e3602. PMID 18985148 DOI: 10.1371/Journal.Pone.0003602 |
0.726 |
|
| 2008 |
Krause J, Unger T, Noçon A, Malaspinas AS, Kolokotronis SO, Stiller M, Soibelzon L, Spriggs H, Dear PH, Briggs AW, Bray SC, O'Brien SJ, Rabeder G, Matheus P, Cooper A, et al. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. Bmc Evolutionary Biology. 8: 220. PMID 18662376 DOI: 10.1186/1471-2148-8-220 |
0.425 |
|
| 2008 |
Baillie GJ, Kolokotronis SO, Waltari E, Maffei JG, Kramer LD, Perkins SL. Phylogenetic and evolutionary analyses of St. Louis encephalitis virus genomes. Molecular Phylogenetics and Evolution. 47: 717-28. PMID 18374605 DOI: 10.1016/J.Ympev.2008.02.015 |
0.341 |
|
| 2007 |
Ho SY, Kolokotronis SO, Allaby RG. Elevated substitution rates estimated from ancient DNA sequences. Biology Letters. 3: 702-5. PMID 17785261 DOI: 10.1098/Rsbl.2007.0377 |
0.346 |
|
| 2007 |
Kolokotronis SO, Macphee RD, Greenwood AD. Detection of mitochondrial insertions in the nucleus (NuMts) of Pleistocene and modern muskoxen. Bmc Evolutionary Biology. 7: 67. PMID 17466066 DOI: 10.1186/1471-2148-7-67 |
0.606 |
|
| 2003 |
Shykoff JA, Kolokotronis SO, Collin CL, López-Villavicencio M. Effects of male sterility on reproductive traits in gynodioecious plants: a meta-analysis. Oecologia. 135: 1-9. PMID 12647098 DOI: 10.1007/S00442-002-1133-Z |
0.61 |
|
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