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Julio Rozas, Ph.D. - Publications

1986- Genetics University of Barcelona, Barcelona, Cataluña, Spain 
evolutionary genetics, comparative genomics, Drosophila, odorant system, bioinformatics

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hinojosa-Alvarez S, Arias S, Ferrand S, Purugganan MD, Rozas J, Rosas U, Wegier A. The chloroplast genome of the pincushion cactus subsp. , a Mexican endangered species. Mitochondrial Dna. Part B, Resources. 5: 2038-2039. PMID 33457733 DOI: 10.1080/23802359.2020.1757523  0.56
2019 Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, ... ... Rozas J, et al. The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31387975 DOI: 10.1073/Pnas.1822129116  1
2019 Bernabeu M, Sánchez-Herrero JF, Huedo P, Prieto A, Hüttener M, Rozas J, Juárez A. Gene duplications in the E. coli genome: common themes among pathotypes. Bmc Genomics. 20: 313. PMID 31014240 DOI: 10.1186/S12864-019-5683-4  0.68
2017 Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248  1
2017 Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, ... ... Rozas J, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059  1
2016 Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, ... ... Rozas J, et al. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biology. PMID 27522922 DOI: 10.1016/J.Ibmb.2016.07.005  0.64
2016 Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, ... ... Rozas J, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507  0.64
2016 Donaire L, Rozas J, Ayllón MA. Molecular characterization of Botrytis ourmia-like virus, a mycovirus close to the plant pathogenic genus Ourmiavirus. Virology. 489: 158-164. PMID 26765967 DOI: 10.1016/J.Virol.2015.11.027  1
2015 Frías-López C, Almeida FC, Guirao-Rico S, Vizueta J, Sánchez-Gracia A, Arnedo MA, Rozas J. Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae). Peerj. 3: e1064. PMID 26157629 DOI: 10.7717/Peerj.1064  1
2015 Kornobis E, Cabellos L, Aguilar F, Frías-López C, Rozas J, Marco J, Zardoya R. TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing. Evolutionary Bioinformatics Online. 11: 97-104. PMID 26056424 DOI: 10.4137/Ebo.S23873  1
2015 Blanco I, Kuchenbaecker K, Cuadras D, Wang X, Barrowdale D, de Garibay GR, Librado P, Sánchez-Gracia A, Rozas J, Bonifaci N, McGuffog L, Pankratz VS, Islam A, Mateo F, Berenguer A, et al. Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. Plos One. 10: e0120020. PMID 25830658 DOI: 10.1371/Journal.Pone.0120020  1
2015 Solà E, Álvarez-Presas M, Frías-López C, Littlewood DT, Rozas J, Riutort M. Evolutionary analysis of mitogenomes from parasitic and free-living flatworms. Plos One. 10: e0120081. PMID 25793530 DOI: 10.1371/Journal.Pone.0120081  1
2015 Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba. Molecular Biology and Evolution. 32: 1284-95. PMID 25637935 DOI: 10.1093/Molbev/Msv020  1
2015 Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba. Genome Biology and Evolution. 7: 444-56. PMID 25577200 DOI: 10.1093/Gbe/Evu288  1
2014 Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Rozas J, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005  1
2014 Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Rozas J, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274  1
2014 Almeida FC, Sánchez-Gracia A, Campos JL, Rozas J. Family size evolution in Drosophila chemosensory gene families: a comparative analysis with a critical appraisal of methods. Genome Biology and Evolution. 6: 1669-82. PMID 24951565 DOI: 10.1093/Gbe/Evu130  1
2014 Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117  1
2014 Álvarez-Presas M, Sánchez-Gracia A, Carbayo F, Rozas J, Riutort M. Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism. Heredity. 112: 656-65. PMID 24549112 DOI: 10.1038/Hdy.2014.3  1
2013 Alvarez-Ponce D, Aguadé M, Rozas J. Comment on "The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway". Evolutionary Bioinformatics Online. 9: 229-34. PMID 23818748 DOI: 10.4137/Ebo.S11915  1
2012 Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou JJ. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. Plos One. 7: e43034. PMID 22952629 DOI: 10.1371/Journal.Pone.0043034  1
2012 Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, ... ... Rozas J, et al. The Drosophila melanogaster Genetic Reference Panel. Nature. 482: 173-8. PMID 22318601 DOI: 10.1038/Nature10811  1
2012 Yeh SD, Do T, Chan C, Cordova A, Carranza F, Yamamoto EA, Abbassi M, Gandasetiawan KA, Librado P, Damia E, Dimitri P, Rozas J, Hartl DL, Roote J, Ranz JM. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proceedings of the National Academy of Sciences of the United States of America. 109: 2043-8. PMID 22308475 DOI: 10.1073/Pnas.1121327109  1
2012 Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics (Oxford, England). 28: 279-81. PMID 22080468 DOI: 10.1093/Bioinformatics/Btr623  1
2012 Alvarez-Ponce D, Guirao-Rico S, Orengo DJ, Segarra C, Rozas J, Aguadé M. Molecular population genetics of the insulin/TOR signal transduction pathway: a network-level analysis in Drosophila melanogaster. Molecular Biology and Evolution. 29: 123-32. PMID 21680868 DOI: 10.1093/Molbev/Msr160  1
2011 Vieira FG, Rozas J. Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system. Genome Biology and Evolution. 3: 476-90. PMID 21527792 DOI: 10.1093/Gbe/Evr033  1
2011 Alvarez-Presas M, Carbayo F, Rozas J, Riutort M. Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. Journal of Evolutionary Biology. 24: 887-96. PMID 21288273 DOI: 10.1111/J.1420-9101.2010.02220.X  1
2011 Alvarez-Ponce D, Aguadé M, Rozas J. Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: a network-level analysis of selective pressures. Genome Biology and Evolution. 3: 87-101. PMID 21149867 DOI: 10.1093/Gbe/Evq084  1
2011 Sánchez-Gracia A, Rozas J. Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation. Heredity. 106: 191-201. PMID 20332808 DOI: 10.1038/Hdy.2010.26  1
2010 Pérez-Alquicira J, Molina-Freaner FE, Piñero D, Weller SG, Martínez-Meyer E, Rozas J, Domínguez CA. The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert 'Sky Islands'. Journal of Evolutionary Biology. 23: 2163-75. PMID 20840309 DOI: 10.1111/J.1420-9101.2010.02075.X  1
2010 Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Rozas J, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107  1
2010 Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology. 19: 113-22. PMID 20482644 DOI: 10.1111/J.1365-2583.2009.00919.X  1
2009 Sánchez-Gracia A, Vieira FG, Rozas J. Molecular evolution of the major chemosensory gene families in insects. Heredity. 103: 208-16. PMID 19436326 DOI: 10.1038/Hdy.2009.55  1
2009 Rozas J. DNA sequence polymorphism analysis using DnaSP. Methods in Molecular Biology (Clifton, N.J.). 537: 337-50. PMID 19378153 DOI: 10.1007/978-1-59745-251-9_17  1
2009 Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England). 25: 1451-2. PMID 19346325 DOI: 10.1093/Bioinformatics/Btp187  1
2009 Alvarez-Ponce D, Aguadé M, Rozas J. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Research. 19: 234-42. PMID 19141596 DOI: 10.1101/Gr.084038.108  1
2008 Sánchez-Gracia A, Rozas J. Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes. Bmc Evolutionary Biology. 8: 323. PMID 19038039 DOI: 10.1186/1471-2148-8-323  1
2008 Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics. 179: 555-67. PMID 18493071 DOI: 10.1534/Genetics.107.083006  1
2008 Andrés O, Kellermann T, López-Giráldez F, Rozas J, Domingo-Roura X, Bosch M. RPS4Y gene family evolution in primates. Bmc Evolutionary Biology. 8: 142. PMID 18477388 DOI: 10.1186/1471-2148-8-142  1
2007 Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biology. 8: R235. PMID 18039354 DOI: 10.1186/Gb-2007-8-11-R235  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Rozas J, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.8
2007 Sánchez-Gracia A, Rozas J. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics. 175: 1923-35. PMID 17277360 DOI: 10.1534/Genetics.106.068015  1
2006 Ojeda A, Rozas J, Folch JM, Pérez-Enciso M. Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations. Genetics. 174: 2119-27. PMID 17057239 DOI: 10.1534/Genetics.106.063057  1
2006 Hutter S, Vilella AJ, Rozas J. Genome-wide DNA polymorphism analyses using VariScan. Bmc Bioinformatics. 7: 409. PMID 16968531 DOI: 10.1186/1471-2105-7-409  1
2006 Quesada H, Ramos-Onsins SE, Rozas J, Aguadé M. Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans. Molecular Biology and Evolution. 23: 1643-7. PMID 16757657 DOI: 10.1093/Molbev/Msl031  1
2005 Vilella AJ, Blanco-Garcia A, Hutter S, Rozas J. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. Bioinformatics (Oxford, England). 21: 2791-3. PMID 15814564 DOI: 10.1093/Bioinformatics/Bti403  1
2005 Munté A, Rozas J, Aguadé M, Segarra C. Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura. Genetics. 169: 1573-81. PMID 15687280 DOI: 10.1534/Genetics.104.032748  1
2003 Sánchez-Gracia A, Aguadé M, Rozas J. Patterns of nucleotide polymorphism and divergence in the odorant-binding protein genes OS-E and OS-F: analysis in the melanogaster species subgroup of Drosophila. Genetics. 165: 1279-88. PMID 14668382  1
2003 Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics (Oxford, England). 19: 2496-7. PMID 14668244 DOI: 10.1093/Bioinformatics/Btg359  1
2003 Quesada H, Ramírez UE, Rozas J, Aguadé M. Large-scale adaptive hitchhiking upon high recombination in Drosophila simulans. Genetics. 165: 895-900. PMID 14573496  1
2003 Pérez JA, Munté A, Rozas J, Segarra C, Aguadé M. Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Molecular Biology and Evolution. 20: 1867-75. PMID 12885962 DOI: 10.1093/Molbev/Msg199  1
2002 Ramos-Onsins SE, Rozas J. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution. 19: 2092-100. PMID 12446801 DOI: 10.1093/Oxfordjournals.Molbev.A004034  1
2002 Elsner HA, Rozas J, Blasczyk R. The nature of introns 4-7 largely reflects the lineage specificity of HLA-A alleles. Immunogenetics. 54: 447-62. PMID 12389093 DOI: 10.1007/S00251-002-0491-3  1
2001 Rozas J, Gullaud M, Blandin G, Aguadé M. DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure. Genetics. 158: 1147-55. PMID 11454763  1
2001 Khadem M, Rozas J, Segarra C, Aguadé M. DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: Inferences about the origin of an insular endemic species Journal of Evolutionary Biology. 14: 379-387. DOI: 10.1046/J.1420-9101.2001.00293.X  1
1999 Rozas J, Rozas R. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics (Oxford, England). 15: 174-5. PMID 10089204 DOI: 10.1093/Bioinformatics/15.2.174  1
1999 Rozas J, Segarra C, Ribó G, Aguadé M. Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics. 151: 189-202. PMID 9872959  1
1998 Ramos-Onsins S, Segarra C, Rozas J, Aguadé M. Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region. Molecular Phylogenetics and Evolution. 9: 33-41. PMID 9479691 DOI: 10.1006/Mpev.1997.0438  1
1998 Khadem M, Rozas J, Segarra C, Brehm A, Aguadé M. Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region Journal of Evolutionary Biology. 11: 439-452. DOI: 10.1046/J.1420-9101.1998.11040439.X  1
1997 Rozas J, Rozas R. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Computer Applications in the Biosciences : Cabios. 13: 307-11. PMID 9183537  1
1997 Betrán E, Rozas J, Navarro A, Barbadilla A. The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. Genetics. 146: 89-99. PMID 9136003  1
1995 Rozas J, Rozas R. DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Computer Applications in the Biosciences : Cabios. 11: 621-5. PMID 8808578 DOI: 10.1093/Bioinformatics/11.6.621  1
1994 Rozas J, Aguadé M. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 91: 11517-21. PMID 7972094 DOI: 10.1073/Pnas.91.24.11517  1
1993 Rozas J, Aguadé M. Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proceedings of the National Academy of Sciences of the United States of America. 90: 8083-7. PMID 8367467 DOI: 10.1073/Pnas.90.17.8083  1
1993 Larruga JM, Rozas J, Hernández M, González AM, Cabrera VM. Latitudinal differences in sex chromosome inversions, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura. Genetica. 92: 67-74. PMID 8163158 DOI: 10.1007/Bf00057509  1
1991 Rozas J. A program to optimize the design of oligonucleotides for PCR amplification. The Journal of Heredity. 82: 84. PMID 1997595 DOI: 10.1093/Jhered/82.1.84  1
1991 Rozas J, Aguade M. Using restriction-map analysis to characterize the colonization process of Drosophila subobscura on the American continent. I. rp49 region Molecular Biology and Evolution. 8: 447-457. DOI: 10.1093/Oxfordjournals.Molbev.A040668  1
1991 Rozas J, Aguade M. Study of an isolated population at the nucleotide level: rp49 region of a Canarian population of Drosophila subobscura Molecular Biology and Evolution. 8: 202-211.  1
1990 Rozas J, Hernández M, Cabrera VM, Prevosti A. Colonization of America by Drosophila subobscura: effect of the founder event on the mitochondrial DNA polymorphism. Molecular Biology and Evolution. 7: 103-9. PMID 2299979 DOI: 10.1093/Oxfordjournals.Molbev.A040584  1
1990 Rozas J, Aguadé M. Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics. 126: 417-26. PMID 2123162  1
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