Scott Edwards, Ph.D. - Publications

Harvard University Harvard University, Cambridge, MA, United States 

127 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118  0.428
2022 Termignoni-Garcia F, Kirchman JJ, Clark J, Edwards SV. Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell's and Gray-Cheeked Thrushes (Aves: Catharus bicknelli and Catharus minimus). Genome Biology and Evolution. 14. PMID 34999784 DOI: 10.1093/gbe/evab255  0.488
2021 Sin SYW, Cloutier A, Nevitt G, Edwards SV. Olfactory receptor subgenome and expression in a highly olfactory procellariiform seabird. Genetics. PMID 34888634 DOI: 10.1093/genetics/iyab210  0.307
2021 Card DC, Shapiro B, Giribet G, Moritz C, Edwards SV. Museum Genomics. Annual Review of Genetics. PMID 34555285 DOI: 10.1146/annurev-genet-071719-020506  0.448
2021 Edwards SV, Robin V, Ferrand N, Moritz C. The evolution of comparative phylogeography: putting the geography (and more) into comparative population genomics. Genome Biology and Evolution. PMID 34347070 DOI: 10.1093/gbe/evab176  0.513
2021 Sin SYW, Hoover BA, Nevitt GA, Edwards SV. Demographic History, Not Mating System, Explains Signatures of Inbreeding and Inbreeding Depression in a Large Outbred Population. The American Naturalist. 197: 658-676. PMID 33989142 DOI: 10.1086/714079  0.329
2021 Lamichhaney S, Catullo R, Keogh JS, Clulow S, Edwards SV, Ezaz T. A bird-like genome from a frog: Mechanisms of genome size reduction in the ornate burrowing frog, . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33836564 DOI: 10.1073/pnas.2011649118  0.518
2021 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Edwards SV, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8  0.775
2020 Edwards SV. Genomics of adaptation and acclimation: from field to lab and back. National Science Review. 7: 128. PMID 34692023 DOI: 10.1093/nsr/nwz173  0.365
2020 Harvey MG, Bravo GA, Claramunt S, Cuervo AM, Derryberry GE, Battilana J, Seeholzer GF, McKay JS, O'Meara BC, Faircloth BC, Edwards SV, Pérez-Emán J, Moyle RG, Sheldon FH, Aleixo A, et al. The evolution of a tropical biodiversity hotspot. Science (New York, N.Y.). 370: 1343-1348. PMID 33303617 DOI: 10.1126/science.aaz6970  0.313
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Edwards SV, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.837
2020 Corbett EC, Bravo GA, Schunck F, Naka LN, Silveira LF, Edwards SV. Evidence for the Pleistocene Arc Hypothesis from genome-wide SNPs in a Neotropical dry forest specialist, the Rufous-fronted Thornbird (Furnariidae: Phacellodomus rufifrons). Molecular Ecology. PMID 32974981 DOI: 10.1111/mec.15640  0.387
2020 Wang P, Burley JT, Liu Y, Chang J, Chen, Lu Q, Li SH, Zhou X, Edwards S, Zhang Z. Genomic Consequences of Long-term Population Decline in Brown Eared Pheasant. Molecular Biology and Evolution. PMID 32853368 DOI: 10.1093/Molbev/Msaa213  0.518
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Edwards SV, et al. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32811988 DOI: 10.1038/S41586-020-2661-6  0.73
2020 Sin SYW, Lu L, Edwards SV. Assembly of the Northern Cardinal () Genome Reveals Candidate Regulatory Regions for Sexually Dichromatic Red Plumage Coloration. G3 (Bethesda, Md.). PMID 32792344 DOI: 10.1534/g3.120.401373  0.503
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Edwards SV, et al. The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32760000 DOI: 10.1038/S41586-020-2561-9  0.797
2020 Termignoni-Garcia F, Louder MIM, Balakrishnan CN, O'Connell L, Edwards SV. Prospects for sociogenomics in avian cooperative breeding and parental care. Current Zoology. 66: 293-306. PMID 32440290 DOI: 10.1093/Cz/Zoz057  0.651
2020 Smith SD, Pennell MW, Dunn CW, Edwards SV. Phylogenetics is the New Genetics (for Most of Biodiversity). Trends in Ecology & Evolution. 35: 415-425. PMID 32294423 DOI: 10.1016/J.Tree.2020.01.005  0.346
2020 Dierickx EG, Sin SYW, van Veelen HPJ, Brooke ML, Liu Y, Edwards SV, Martin SH. Genetic diversity, demographic history and neo-sex chromosomes in the Critically Endangered Raso lark. Proceedings. Biological Sciences. 287: 20192613. PMID 32126957 DOI: 10.1098/rspb.2019.2613  0.396
2019 Näpflin K, O'Connor EA, Becks L, Bensch S, Ellis VA, Hafer-Hahmann N, Harding KC, Lindén SK, Olsen MT, Roved J, Sackton TB, Shultz AJ, Venkatakrishnan V, Videvall E, Westerdahl H, ... ... Edwards SV, et al. Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales. Peerj. 7: e8013. PMID 31720122 DOI: 10.7717/Peerj.8013  0.771
2019 Du Y, Wu S, Edwards SV, Liu L. The effect of alignment uncertainty, substitution models and priors in building and dating the mammal tree of life. Bmc Evolutionary Biology. 19: 203. PMID 31694538 DOI: 10.1186/s12862-019-1534-9  0.334
2019 O'Connor EA, Westerdahl H, Burri R, Edwards SV. Avian MHC Evolution in the Era of Genomics: Phase 1.0. Cells. 8. PMID 31561531 DOI: 10.3390/cells8101152  0.397
2019 Xu L, Wa Sin SY, Grayson P, Edwards SV, Sackton TB. Evolutionary dynamics of sex chromosomes of paleognathous birds. Genome Biology and Evolution. PMID 31329234 DOI: 10.1093/gbe/evz154  0.337
2019 Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV. Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180248. PMID 31154982 DOI: 10.1098/Rstb.2018.0248  0.486
2019 Cloutier A, Sackton TB, Grayson P, Clamp M, Baker AJ, Edwards SV. Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone. Systematic Biology. PMID 31135914 DOI: 10.1093/sysbio/syz019  0.391
2019 Sackton TB, Grayson P, Cloutier A, Hu Z, Liu JS, Wheeler NE, Gardner PP, Clarke JA, Baker AJ, Clamp M, Edwards SV. Convergent regulatory evolution and loss of flight in paleognathous birds. Science (New York, N.Y.). 364: 74-78. PMID 30948549 DOI: 10.1126/Science.Aat7244  0.394
2019 Bravo GA, Antonelli A, Bacon CD, Bartoszek K, Blom MPK, Huynh S, Jones G, Knowles LL, Lamichhaney S, Marcussen T, Morlon H, Nakhleh LK, Oxelman B, Pfeil B, Schliep A, ... ... Edwards SV, et al. Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. Peerj. 7: e6399. PMID 30783571 DOI: 10.7717/Peerj.6399  0.354
2018 Schmitt CJ, Cook JA, Zamudio KR, Edwards SV. Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374. PMID 30455205 DOI: 10.1098/Rstb.2017.0387  0.607
2018 Ezaz T, Edwards SV. Editorial: Evolutionary Feedbacks Between Population Biology and Genome Architecture. Frontiers in Genetics. 9: 329. PMID 30186309 DOI: 10.3389/fgene.2018.00329  0.42
2018 Perry BW, Card DC, McGlothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Hoffmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, ... ... Edwards SV, et al. Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome. Genome Biology and Evolution. PMID 30060036 DOI: 10.1093/Gbe/Evy157  0.525
2018 Wu S, Edwards S, Liu L. Genome-scale DNA sequence data and the evolutionary history of placental mammals. Data in Brief. 18: 1972-1975. PMID 29904704 DOI: 10.1016/J.Dib.2018.04.094  0.458
2018 Tang Q, Edwards SV, Rheindt FE. Rapid diversification and hybridization have shaped the dynamic history of the genus Elaenia. Molecular Phylogenetics and Evolution. PMID 29758274 DOI: 10.1016/j.ympev.2018.05.008  0.303
2017 Ghanem M, Wang L, Zhang Y, Edwards S, Lu A, Ley D, El-Gazzar M. Core Genome Multilocus Sequence Typing (cgMLST): A Standardized Approach for Molecular Typing of Mycoplasma gallisepticum. Journal of Clinical Microbiology. PMID 29070657 DOI: 10.1128/Jcm.01145-17  0.5
2017 Grayson P, Sin SYW, Sackton TB, Edwards SV. Comparative Genomics as a Foundation for Evo-Devo Studies in Birds. Methods in Molecular Biology (Clifton, N.J.). 1650: 11-46. PMID 28809012 DOI: 10.1007/978-1-4939-7216-6_2  0.41
2017 Campbell-Staton SC, Cheviron ZA, Rochette N, Catchen J, Losos JB, Edwards SV. Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard. Science (New York, N.Y.). 357: 495-498. PMID 28774927 DOI: 10.1126/Science.Aam5512  0.4
2017 Termignoni-García F, Jaramillo-Correa JP, Chablé-Santos J, Liu M, Shultz AJ, Edwards SV, Escalante Pliego P. Genomic footprints of adaptation in a cooperatively breeding tropical bird across a vegetation gradient. Molecular Ecology. PMID 28664998 DOI: 10.1111/Mec.14224  0.794
2017 Tigano A, Shultz AJ, Edwards SV, Robertson GJ, Friesen VL. Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird. Ecology and Evolution. 7: 2370-2381. PMID 28405300 DOI: 10.1002/Ece3.2819  0.778
2016 Shultz AJ, Baker AJ, Hill GE, Nolan PM, Edwards SV. SNPs across time and space: population genomic signatures of founder events and epizootics in the House Finch (Haemorhous mexicanus). Ecology and Evolution. 6: 7475-7489. PMID 28725414 DOI: 10.1002/Ece3.2444  0.789
2016 Zhou X, Meng X, Liu Z, Chang J, Wang B, Li M, Wengel PO, Tian S, Wen C, Wang Z, Garber PA, Pan H, Ye X, Xiang Z, Bruford MW, ... Edwards SV, et al. Population Genomics Reveals Low Genetic Diversity and Adaptation to Hypoxia in Snub-Nosed Monkeys. Molecular Biology and Evolution. 33: 2670-81. PMID 27555581 DOI: 10.1093/Molbev/Msw150  0.484
2016 Edwards SV, Potter S, Schmitt CJ, Bragg JG, Moritz C. Reticulation, divergence, and the phylogeography-phylogenetics continuum. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432956 DOI: 10.1073/Pnas.1601066113  0.727
2016 Campbell-Staton SC, Edwards SV, Losos JB. Climate-mediated adaptation after mainland colonization of an ancestrally subtropical island lizard, Anolis carolinensis. Journal of Evolutionary Biology. PMID 27384884 DOI: 10.1111/jeb.12935  0.316
2016 Suh A, Witt CC, Menger J, Sadanandan KR, Podsiadlowski L, Gerth M, Weigert A, McGuire JA, Mudge J, Edwards SV, Rheindt FE. Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. Nature Communications. 7: 11396. PMID 27097561 DOI: 10.1038/Ncomms11396  0.699
2016 Raposo do Amaral F, Edwards SV, Pie MR, Jennings WB, Svensson-Coelho M, d'Horta FM, Schmitt CJ, Maldonado-Coelho M. The "Atlantis Forest hypothesis" does not explain Atlantic Forest phylogeography. Proceedings of the National Academy of Sciences of the United States of America. PMID 26984489 DOI: 10.1073/Pnas.1602213113  0.59
2016 Shultz AJ, Baker AJ, Hill GE, Nolan PM, Edwards SV. SNPs across time and space: Population genomic signatures of founder events and epizootics in the House Finch (Haemorhous mexicanus) Ecology and Evolution. DOI: 10.1002/ece3.2444  0.789
2015 Porto-Neto LR, Edwards S, Fortes MR, Lehnert SA, Reverter A, McGowan M. Genome-wide association for the outcome of fixed-time artificial insemination of Brahman heifers in northern Australia. Journal of Animal Science. 93: 5119-5127. PMID 26641032 DOI: 10.2527/jas.2015-9401  0.343
2015 Moore TY, Organ CL, Edwards SV, Biewener AA, Tabin CJ, Jenkins FA, Cooper KL. Multiple Phylogenetically Distinct Events Shaped the Evolution of Limb Skeletal Morphologies Associated with Bipedalism in the Jerboas. Current Biology : Cb. 25: 2785-94. PMID 26455300 DOI: 10.1016/J.Cub.2015.09.037  0.703
2015 Dierickx EG, Shultz AJ, Sato F, Hiraoka T, Edwards SV. Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: implications for conservation. Evolutionary Applications. 8: 662-78. PMID 26240604 DOI: 10.1111/Eva.12274  0.775
2015 Edwards SM, Thomsen B, Madsen P, Sørensen P. Partitioning of genomic variance reveals biological pathways associated with udder health and milk production traits in dairy cattle. Genetics, Selection, Evolution : Gse. 47: 60. PMID 26169777 DOI: 10.1186/s12711-015-0132-6  0.395
2015 Badenhorst D, Hillier LW, Literman R, Montiel EE, Radhakrishnan S, Shen Y, Minx P, Janes D, Warren WC, Edwards SV, Valenzuela N. Physical mapping and refinement of the painted turtle genome (Chrysemys picta) inform amniote genome evolution and challenges turtle-bird chromosomal conservation. Genome Biology and Evolution. PMID 26108489 DOI: 10.1093/Gbe/Evv119  0.355
2015 Miller HC, O'Meally D, Ezaz T, Amemiya C, Marshall-Graves JA, Edwards S. Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus. G3 (Bethesda, Md.). PMID 25953959 DOI: 10.1534/G3.115.017467  0.442
2015 Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Estimating phylogenetic trees from genome-scale data. Annals of the New York Academy of Sciences. PMID 25873435 DOI: 10.1111/Nyas.12747  0.369
2015 Webb AE, Gerek ZN, Morgan CC, Walsh TA, Loscher CE, Edwards SV, O'Connell MJ. Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response. Molecular Biology and Evolution. 32: 1717-29. PMID 25758009 DOI: 10.1093/Molbev/Msv051  0.369
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Edwards SV, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1  0.492
2015 Glubb DM, Maranian MJ, Michailidou K, Pooley KA, Meyer KB, Kar S, Carlebur S, O'Reilly M, Betts JA, Hillman KM, Kaufmann S, Beesley J, Canisius S, Hopper JL, Southey MC, ... ... Edwards SL, et al. Fine-scale mapping of the 5q11.2 breast cancer locus reveals at least three independent risk variants regulating MAP3K1. American Journal of Human Genetics. 96: 5-20. PMID 25529635 DOI: 10.1016/J.Ajhg.2014.11.009  0.46
2015 Lowe CB, Clarke JA, Baker AJ, Haussler D, Edwards SV. Feather development genes and associated regulatory innovation predate the origin of Dinosauria. Molecular Biology and Evolution. 32: 23-8. PMID 25415961 DOI: 10.1093/Molbev/Msu309  0.382
2015 Painter JN, O'Mara TA, Batra J, Cheng T, Lose FA, Dennis J, Michailidou K, Tyrer JP, Ahmed S, Ferguson K, Healey CS, Kaufmann S, Hillman KM, Walpole C, Moya L, ... ... Edwards SL, et al. Fine-mapping of the HNF1B multicancer locus identifies candidate variants that mediate endometrial cancer risk. Human Molecular Genetics. 24: 1478-92. PMID 25378557 DOI: 10.1093/Hmg/Ddu552  0.495
2015 Edwards SV, Shultz AJ, Campbell-Staton SC. Next-generation sequencing and the expanding domain of phylogeography Folia Zoologica. 64: 187-206. DOI: 10.25225/Fozo.V64.I3.A2.2015  0.814
2015 Smith NA, Chiappe LM, Clarke JA, Edwards SV, Nesbitt SJ, Norell MA, Stidham TA, Turner A, Tuinen MV, Vinther J, Xu X. Rhetoric vs. reality: A commentary on "Bird Origins Anew" by A. Feduccia Auk. 132: 467-480. DOI: 10.1642/Auk-14-203.1  0.631
2015 Dierickx EG, Shultz AJ, Sato F, Hiraoka T, Edwards SV. Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: Implications for conservation Evolutionary Applications. DOI: 10.1111/eva.12274  0.804
2014 Janes DE, Organ CL, Stiglec R, O'Meally D, Sarre SD, Georges A, Graves JA, Valenzuela N, Literman RA, Rutherford K, Gemmell N, Iverson JB, Tamplin JW, Edwards SV, Ezaz T. Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia. Biology Letters. 10: 20140809. PMID 25540158 DOI: 10.1098/Rsbl.2014.0809  0.673
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... Edwards SV, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449  0.783
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Edwards SV, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451  0.793
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Edwards SV, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385  0.743
2014 Zhang Q, Hill GE, Edwards SV, Backström N. A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines. Bmc Genomics. 15: 305. PMID 24758272 DOI: 10.1186/1471-2164-15-305  0.752
2014 Wu S, Zhang F, Edwards SV, Wu W, Ye J, Bi S, Ni X, Quan C, Meng J, Organ CL. The evolution of bipedalism in jerboas (rodentia: Dipodoidea): origin in humid and forested environments. Evolution; International Journal of Organic Evolution. 68: 2108-18. PMID 24628052 DOI: 10.1111/Evo.12404  0.656
2014 Rheindt FE, Fujita MK, Wilton PR, Edwards SV. Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs. Systematic Biology. 63: 134-52. PMID 24304652 DOI: 10.1093/Sysbio/Syt070  0.742
2013 Ezaz T, Azad B, O'Meally D, Young MJ, Matsubara K, Edwards MJ, Zhang X, Holleley CE, Deakin JE, Marshall Graves JA, Georges A, Edwards SV, Sarre SD. Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1. Bmc Genomics. 14: 899. PMID 24344927 DOI: 10.1186/1471-2164-14-899  0.357
2013 Alcaide M, Liu M, Edwards SV. Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3. Peerj. 1: e86. PMID 23781408 DOI: 10.7717/peerj.86  0.329
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Edwards SV, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28  0.792
2013 Backström N, Shipilina D, Blom MP, Edwards SV. Cis-regulatory sequence variation and association with Mycoplasma load in natural populations of the house finch (Carpodacus mexicanus). Ecology and Evolution. 3: 655-66. PMID 23532859 DOI: 10.1002/ece3.484  0.338
2013 Backström N, Zhang Q, Edwards SV. Evidence from a house finch (Haemorhous mexicanus) spleen transcriptome for adaptive evolution and biased gene conversion in passerine birds. Molecular Biology and Evolution. 30: 1046-50. PMID 23429858 DOI: 10.1093/Molbev/Mst033  0.733
2013 Kültz D, Clayton DF, Robinson GE, Albertson C, Carey HV, Cummings ME, Dewar K, Edwards SV, Hofmann HA, Gross LJ, Kingsolver JG, Meaney MJ, Schlinger BA, Shingleton AW, Sokolowski MB, et al. New frontiers for organismal biology Bioscience. 63: 464-471. DOI: 10.1525/Bio.2013.63.6.8  0.568
2012 Campbell-Staton SC, Goodman RM, Backström N, Edwards SV, Losos JB, Kolbe JJ. Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis). Ecology and Evolution. 2: 2274-84. PMID 23139885 DOI: 10.1002/Ece3.324  0.392
2012 Wu S, Wu W, Zhang F, Ye J, Ni X, Sun J, Edwards SV, Meng J, Organ CL. Molecular and paleontological evidence for a post-Cretaceous origin of rodents. Plos One. 7: e46445. PMID 23071573 DOI: 10.1371/Journal.Pone.0046445  0.671
2012 Song S, Liu L, Edwards SV, Wu S. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proceedings of the National Academy of Sciences of the United States of America. 109: 14942-7. PMID 22930817 DOI: 10.1073/pnas.1211733109  0.31
2012 Zhang Q, Edwards SV. The evolution of intron size in amniotes: a role for powered flight? Genome Biology and Evolution. 4: 1033-43. PMID 22930760 DOI: 10.1093/Gbe/Evs070  0.758
2012 Anderson CN, Liu L, Pearl D, Edwards SV. Tangled trees: the challenge of inferring species trees from coalescent and noncoalescent genes. Methods in Molecular Biology (Clifton, N.J.). 856: 3-28. PMID 22399453 DOI: 10.1007/978-1-61779-585-5_1  0.307
2012 Delaney NF, Balenger S, Bonneaud C, Marx CJ, Hill GE, Ferguson-Noel N, Tsai P, Rodrigo A, Edwards SV. Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. Plos Genetics. 8: e1002511. PMID 22346765 DOI: 10.1371/Journal.Pgen.1002511  0.36
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Edwards SV, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415  0.741
2012 Lee JY, Joseph L, Edwards SV. A species tree for the Australo-Papuan Fairy-wrens and allies (Aves: Maluridae). Systematic Biology. 61: 253-71. PMID 21978990 DOI: 10.1093/Sysbio/Syr101  0.574
2011 Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, ... ... Edwards SV, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 477: 587-91. PMID 21881562 DOI: 10.1038/Nature10390  0.846
2011 Fujita MK, Edwards SV, Ponting CP. The Anolis lizard genome: an amniote genome without isochores. Genome Biology and Evolution. 3: 974-84. PMID 21795750 DOI: 10.1093/Gbe/Evr072  0.812
2011 Castoe TA, Bronikowski AM, Brodie ED, Edwards SV, Pfrender ME, Shapiro MD, Pollock DD, Warren WC. A proposal to sequence the genome of a garter snake (Thamnophis sirtalis). Standards in Genomic Sciences. 4: 257-70. PMID 21677863 DOI: 10.4056/Sigs.1664145  0.503
2011 Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV. Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor. Genome Biology and Evolution. 3: 102-13. PMID 21183607 DOI: 10.1093/Gbe/Evq087  0.835
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  0.69
2011 Organ CL, Edwards SV. Major Events in Avian Genome Evolution Living Dinosaurs: the Evolutionary History of Modern Birds. 325-337. DOI: 10.1002/9781119990475.ch13  0.764
2011 Organ CL, Rasmussen MD, Baldwin MW, Kellis M, Edwards SV. Phylogenomic Approach to the Evolutionary Dynamics of Gene Duplication in Birds Evolution After Gene Duplication. 253-268. DOI: 10.1002/9780470619902.ch14  0.676
2010 Liu L, Yu L, Edwards SV. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. Bmc Evolutionary Biology. 10: 302. PMID 20937096 DOI: 10.1186/1471-2148-10-302  0.353
2010 Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV. Genome evolution in Reptilia, the sister group of mammals. Annual Review of Genomics and Human Genetics. 11: 239-64. PMID 20590429 DOI: 10.1146/Annurev-Genom-082509-141646  0.845
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, ... ... Edwards SV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/Nature08819  0.808
2010 Balakrishnan CN, Ekblom R, Völker M, Westerdahl H, Godinez R, Kotkiewicz H, Burt DW, Graves T, Griffin DK, Warren WC, Edwards SV. Gene duplication and fragmentation in the zebra finch major histocompatibility complex. Bmc Biology. 8: 29. PMID 20359332 DOI: 10.1186/1741-7007-8-29  0.777
2010 Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/J.1365-294X.2009.04487.X  0.706
2010 Balakrishnan CN, Edwards SV, Clayton DF. The Zebra Finch genome and avian genomics in the wild Emu. 110: 233-241. DOI: 10.1071/Mu09087  0.795
2009 Janes DE, Organ CL, Edwards SV. Variability in sex-determining mechanisms influences genome complexity in reptilia. Cytogenetic and Genome Research. 127: 242-8. PMID 20203474 DOI: 10.1159/000293283  0.746
2009 Chapus C, Edwards SV. Genome evolution in Reptilia: In silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird Bmc Genomics. 10. PMID 19607659 DOI: 10.1186/1471-2164-10-S2-S8  0.504
2009 Silva MC, Edwards SV. Structure and evolution of a new avian MHC class II B gene in a sub-antarctic seabird, the thin-billed prion (Procellariiformes: Pachyptila belcheri) Journal of Molecular Evolution. 68: 279-291. PMID 19209378 DOI: 10.1007/s00239-009-9200-2  0.357
2009 Balakrishnan CN, Edwards SV. Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata). Genetics. 181: 645-60. PMID 19047416 DOI: 10.1534/Genetics.108.094250  0.624
2009 Brito PH, Edwards SV. Multilocus phylogeography and phylogenetics using sequence-based markers Genetica. 135: 439-455. PMID 18651229 DOI: 10.1007/s10709-008-9293-3  0.397
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, ... ... Edwards S, ... ... Edwards SV, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086  0.671
2008 Janes DE, Ezaz T, Graves JA, Edwards SV. Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals. Integrative and Comparative Biology. 48: 505-11. PMID 21669811 DOI: 10.1093/icb/icn024  0.302
2008 Organ CL, Moreno RG, Edwards SV. Three tiers of genome evolution in reptiles. Integrative and Comparative Biology. 48: 494-504. PMID 21669810 DOI: 10.1093/Icb/Icn046  0.792
2008 Lee JY, Edwards SV. Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution; International Journal of Organic Evolution. 62: 3117-34. PMID 19087188 DOI: 10.1111/J.1558-5646.2008.00543.X  0.571
2008 Thomson RC, Shedlock AM, Edwards SV, Shaffer HB. Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles. Molecular Phylogenetics and Evolution. 49: 514-25. PMID 18761096 DOI: 10.1016/J.Ympev.2008.08.006  0.36
2008 Waltari E, Edwards SV. Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs. The American Naturalist. 160: 539-52. PMID 18707506 DOI: 10.1086/342079  0.388
2008 Shedlock AM, Janes DE, Edwards SV. Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles. Methods in Molecular Biology (Clifton, N.J.). 422: 91-117. PMID 18629663 DOI: 10.1007/978-1-59745-581-7_7  0.495
2008 Edwards SV. A smörgåsbord of markers for avian ecology and evolution Molecular Ecology. 17: 945-946. PMID 18221271 DOI: 10.1111/j.1365-294X.2007.03644.x  0.428
2008 Bonneaud C, Burnside J, Edwards SV. High-speed developments in avian genomics Bioscience. 58: 587-595. DOI: 10.1641/B580706  0.396
2008 Organ CL, Moreno RG, Edwards SV. Three tiers of genome evolution in reptiles Integrative and Comparative Biology. 48: 494-504. DOI: 10.1093/icb/icn046  0.781
2007 Alcaide M, Edwards SV, Negro JJ. Characterization, polymorphism, and evolution of MHC class II B genes in birds of prey Journal of Molecular Evolution. 65: 541-554. PMID 17925996 DOI: 10.1007/s00239-007-9033-9  0.383
2007 Organ CL, Shedlock AM, Meade A, Pagel M, Edwards SV. Origin of avian genome size and structure in non-avian dinosaurs. Nature. 446: 180-4. PMID 17344851 DOI: 10.1038/Nature05621  0.816
2007 Shedlock AM, Botka CW, Zhao S, Shetty J, Zhang T, Liu JS, Deschavanne PJ, Edwards SV. Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 2767-72. PMID 17307883 DOI: 10.1073/pnas.0606204104  0.486
2007 Hess CM, Wang Z, Edwards SV. Evolutionary genetics of Carpodacus mexicanus, a recently colonized host of a bacterial pathogen, Mycoplasma gallisepticum Genetica. 129: 217-225. PMID 17103248 DOI: 10.1007/S10709-006-9016-6  0.328
2006 Wang Z, Miyake T, Edwards SV, Amemiya CT. Tuatara (Sphenodon) genomics: BAC library construction, sequence survey, and application to the DMRT gene family. The Journal of Heredity. 97: 541-8. PMID 17135461 DOI: 10.1093/JHERED/ESL040  0.491
2006 Aguilar A, Edwards SV, Smith TB, Wayne RK. Patterns of variation in MHC class II beta loci of the little greenbul (Andropadus virens) with comments on MHC evolution in birds. The Journal of Heredity. 97: 133-42. PMID 16489149 DOI: 10.1093/Jhered/Esj013  0.348
2005 Chapus C, Dufraigne C, Edwards S, Giron A, Fertil B, Deschavanne P. Exploration of phylogenetic data using a global sequence analysis method. Bmc Evolutionary Biology. 5: 63. PMID 16280081 DOI: 10.1186/1471-2148-5-63  0.386
2005 Edwards SV, Jennings WB, Shedlock AM. Phylogenetics of modern birds in the era of genomics Proceedings of the Royal Society B: Biological Sciences. 272: 979-992. PMID 16024355 DOI: 10.1098/rspb.2004.3035  0.51
2005 Edwards SV, Kingan SB, Calkins JD, Balakrishnan CN, Jennings WB, Swanson WJ, Sorenson MD. Speciation in birds: genes, geography, and sexual selection. Proceedings of the National Academy of Sciences of the United States of America. 102: 6550-7. PMID 15851678 DOI: 10.1073/Pnas.0501846102  0.761
2005 Edwards SV, Dillon M. Hitchhiking and recombination in birds: evidence from Mhc-linked and unlinked loci in Red-winged Blackbirds (Agelaius phoeniceus). Genetical Research. 84: 175-92. PMID 15822606 DOI: 10.1017/S0016672304007189  0.31
2003 Birks SM, Edwards SV. A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. 23: 408-21. PMID 12099795 DOI: 10.1016/S1055-7903(02)00002-7  0.307
2003 Brumfield RT, Beerli P, Nickerson DA, Edwards SV. The utility of single nucleotide polymorphisms in inferences of population history Trends in Ecology and Evolution. 18: 249-256. DOI: 10.1016/S0169-5347(03)00018-1  0.383
2002 Edwards SV, Fertil B, Giron A, Deschavanne PJ. A genomic schism in birds revealed by phylogenetic analysis of DNA strings. Systematic Biology. 51: 599-613. PMID 12228002 DOI: 10.1080/10635150290102285  0.489
2000 Hoekstra HE, Edwards SV. Multiple origins of XY female mice (genus Akodon): phylogenetic and chromosomal evidence. Proceedings. Biological Sciences / the Royal Society. 267: 1825-31. PMID 11052532 DOI: 10.1098/Rspb.2000.1217  0.602
2000 Hess CM, Gasper J, Hoekstra HE, Hill CE, Edwards SV. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Research. 10: 613-23. PMID 10810083 DOI: 10.1101/Gr.10.5.613  0.743
1999 Edwards SV, Hess CM, Gasper J, Garrigan D. Toward an evolutionary genomics of the avian Mhc. Immunological Reviews. 167: 119-32. PMID 10319255 DOI: 10.1111/J.1600-065X.1999.Tb01386.X  0.352
1995 Edwards SV, Grahn M, Potts WK. Dynamics of Mhc evolution in birds and crocodilians: Amplification of class II genes with degenerate primers Molecular Ecology. 4: 719-729. PMID 8564010 DOI: 10.1111/J.1365-294X.1995.Tb00272.X  0.337
1991 Edwards SV, Arctander P, Wilson AC. Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proceedings. Biological Sciences / the Royal Society. 243: 99-107. PMID 1676522 DOI: 10.1098/Rspb.1991.0017  0.482
1989 Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, Wilson AC. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America. 86: 6196-200. PMID 2762322 DOI: 10.1073/Pnas.86.16.6196  0.732
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