Scott Edwards, Ph.D. - Publications

Affiliations: 
Harvard University Harvard University, Cambridge, MA, United States 
Area:
Evolution

138 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dierickx EG, Sin SYW, van Veelen HPJ, Brooke ML, Liu Y, Edwards SV, Martin SH. Genetic diversity, demographic history and neo-sex chromosomes in the Critically Endangered Raso lark. Proceedings. Biological Sciences. 287: 20192613. PMID 32126957 DOI: 10.1098/rspb.2019.2613  0.48
2020 Jiang X, Edwards SV, Liu L. The Multispecies Coalescent Model Outperforms Concatenation across Diverse Phylogenomic Data Sets. Systematic Biology. PMID 32011711 DOI: 10.1093/sysbio/syaa008  0.32
2019 Näpflin K, O'Connor EA, Becks L, Bensch S, Ellis VA, Hafer-Hahmann N, Harding KC, Lindén SK, Olsen MT, Roved J, Sackton TB, Shultz AJ, Venkatakrishnan V, Videvall E, Westerdahl H, ... ... Edwards SV, et al. Genomics of host-pathogen interactions: challenges and opportunities across ecological and spatiotemporal scales. Peerj. 7: e8013. PMID 31720122 DOI: 10.7717/peerj.8013  0.6
2019 Du Y, Wu S, Edwards SV, Liu L. The effect of alignment uncertainty, substitution models and priors in building and dating the mammal tree of life. Bmc Evolutionary Biology. 19: 203. PMID 31694538 DOI: 10.1186/s12862-019-1534-9  0.36
2019 Young JJ, Grayson P, Edwards SV, Tabin CJ. Attenuated Fgf Signaling Underlies the Forelimb Heterochrony in the Emu Dromaius novaehollandiae. Current Biology : Cb. PMID 31668620 DOI: 10.1016/j.cub.2019.09.014  0.6
2019 O'Connor EA, Westerdahl H, Burri R, Edwards SV. Avian MHC Evolution in the Era of Genomics: Phase 1.0. Cells. 8. PMID 31561531 DOI: 10.3390/cells8101152  0.32
2019 Xu L, Wa Sin SY, Grayson P, Edwards SV, Sackton TB. Evolutionary dynamics of sex chromosomes of paleognathous birds. Genome Biology and Evolution. PMID 31329234 DOI: 10.1093/gbe/evz154  0.6
2019 Liu L, Anderson C, Pearl D, Edwards SV. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model. Methods in Molecular Biology (Clifton, N.J.). 1910: 211-239. PMID 31278666 DOI: 10.1007/978-1-4939-9074-0_7  0.32
2019 Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV. Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180248. PMID 31154982 DOI: 10.1098/rstb.2018.0248  0.6
2019 Cloutier A, Sackton TB, Grayson P, Clamp M, Baker AJ, Edwards SV. Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone. Systematic Biology. PMID 31135914 DOI: 10.1093/sysbio/syz019  0.6
2019 Sackton TB, Grayson P, Cloutier A, Hu Z, Liu JS, Wheeler NE, Gardner PP, Clarke JA, Baker AJ, Clamp M, Edwards SV. Convergent regulatory evolution and loss of flight in paleognathous birds. Science (New York, N.Y.). 364: 74-78. PMID 30948549 DOI: 10.1126/science.aat7244  0.6
2019 Hu Z, Sackton TB, Edwards SV, Liu JS. Bayesian detection of convergent rate changes of conserved noncoding elements on phylogenetic trees. Molecular Biology and Evolution. PMID 30851112 DOI: 10.1093/molbev/msz049  0.6
2018 Hoover B, Alcaide M, Jennings S, Sin SYW, Edwards S, Nevitt G. Ecology can inform genetics: Disassortative mating contributes to MHC polymorphism in Leach's storm-petrels (Oceanodroma leucorhoa). Molecular Ecology. PMID 30010226 DOI: 10.1111/mec.14801  0.48
2018 Choi SI, Park B, Joo J, Kim YI, Lee JY, Kim CG, Choi IJ, Kook MC, Cho SJ. Three-year interval for endoscopic screening may reduce the mortality in patients with gastric cancer. Surgical Endoscopy. PMID 30006847 DOI: 10.1007/s00464-018-6353-3  0.32
2018 Wang Y, Deng H, Mou T, Li J, Liu H, Zhou H, Li G. Short-term outcomes of single-incision plus one-port laparoscopic versus conventional laparoscopic surgery for rectosigmoid cancer: a randomized controlled trial. Surgical Endoscopy. PMID 30006846 DOI: 10.1007/s00464-018-6350-6  0.44
2018 Kim S, Park J, Phong PD, Shin C, Iftiquar SM, Yi J. Improving the efficiency of rear emitter silicon solar cell using an optimized n-type silicon oxide front surface field layer. Scientific Reports. 8: 10657. PMID 30006606 DOI: 10.1038/s41598-018-28823-x  0.36
2018 Wu S, Edwards S, Liu L. Genome-scale DNA sequence data and the evolutionary history of placental mammals. Data in Brief. 18: 1972-1975. PMID 29904704 DOI: 10.1016/j.dib.2018.04.094  0.36
2018 Tang Q, Edwards SV, Rheindt FE. Rapid diversification and hybridization have shaped the dynamic history of the genus Elaenia. Molecular Phylogenetics and Evolution. PMID 29758274 DOI: 10.1016/j.ympev.2018.05.008  0.4
2018 Campbell-Staton SC, Bare A, Losos JB, Edwards SV, Cheviron ZA. Physiological and regulatory underpinnings of geographic variation in reptilian cold tolerance across a latitudinal cline. Molecular Ecology. PMID 29633453 DOI: 10.1111/mec.14580  0.48
2017 Li H, Yang K, Wang W, Niu Y, Li J, Dong Y, Liu Y, Wang CC, Wang L, Liang H. Crystal and solution structures of human protein disulfide isomerase-like protein of the testis (PDILT) provide insight into its chaperone activity. The Journal of Biological Chemistry. PMID 29203529 DOI: 10.1074/jbc.M117.797290  0.36
2017 Liu L, Zhang J, Rheindt FE, Lei F, Qu Y, Wang Y, Zhang Y, Sullivan C, Nie W, Wang J, Yang F, Chen J, Edwards SV, Meng J, Wu S. Reply to Gatesy and Springer: Claims of homology errors and zombie lineages do not compromise the dating of placental diversification. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078408 DOI: 10.1073/pnas.1715371114  0.4
2017 Grayson P, Sin SYW, Sackton TB, Edwards SV. Comparative Genomics as a Foundation for Evo-Devo Studies in Birds. Methods in Molecular Biology (Clifton, N.J.). 1650: 11-46. PMID 28809012 DOI: 10.1007/978-1-4939-7216-6_2  0.6
2017 Liu L, Zhang J, Rheindt FE, Lei F, Qu Y, Wang Y, Zhang Y, Sullivan C, Nie W, Wang J, Yang F, Chen J, Edwards SV, Meng J, Wu S. Genomic evidence reveals a radiation of placental mammals uninterrupted by the KPg boundary. Proceedings of the National Academy of Sciences of the United States of America. PMID 28808022 DOI: 10.1073/pnas.1616744114  0.4
2017 Campbell-Staton SC, Cheviron ZA, Rochette N, Catchen J, Losos JB, Edwards SV. Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard. Science (New York, N.Y.). 357: 495-498. PMID 28774927 DOI: 10.1126/science.aam5512  0.48
2017 Termignoni-García F, Jaramillo-Correa JP, Chablé-Santos J, Liu M, Shultz AJ, Edwards SV, Escalante Pliego P. Genomic footprints of adaptation in a cooperatively breeding tropical bird across a vegetation gradient. Molecular Ecology. PMID 28664998 DOI: 10.1111/mec.14224  0.56
2017 Tigano A, Shultz AJ, Edwards SV, Robertson GJ, Friesen VL. Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird. Ecology and Evolution. 7: 2370-2381. PMID 28405300 DOI: 10.1002/ece3.2819  0.56
2016 Shultz AJ, Baker AJ, Hill GE, Nolan PM, Edwards SV. SNPs across time and space: population genomic signatures of founder events and epizootics in the House Finch (Haemorhous mexicanus). Ecology and Evolution. 6: 7475-7489. PMID 28725414 DOI: 10.1002/ece3.2444  0.56
2016 Edwards SV, Potter S, Schmitt CJ, Bragg JG, Moritz C. Reticulation, divergence, and the phylogeography-phylogenetics continuum. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432956 DOI: 10.1073/pnas.1601066113  1
2016 Campbell-Staton SC, Edwards SV, Losos JB. Climate-mediated adaptation after mainland colonization of an ancestrally subtropical island lizard, Anolis carolinensis. Journal of Evolutionary Biology. PMID 27384884 DOI: 10.1111/jeb.12935  1
2016 Suh A, Witt CC, Menger J, Sadanandan KR, Podsiadlowski L, Gerth M, Weigert A, McGuire JA, Mudge J, Edwards SV, Rheindt FE. Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. Nature Communications. 7: 11396. PMID 27097561 DOI: 10.1038/ncomms11396  1
2016 Raposo do Amaral F, Edwards SV, Pie MR, Jennings WB, Svensson-Coelho M, d'Horta FM, Schmitt CJ, Maldonado-Coelho M. The "Atlantis Forest hypothesis" does not explain Atlantic Forest phylogeography. Proceedings of the National Academy of Sciences of the United States of America. PMID 26984489 DOI: 10.1073/pnas.1602213113  1
2015 Adare A, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Akimoto R, Al-Bataineh H, Alexander J, Alfred M, Al-Ta'ani H, Andrews KR, Angerami A, Aoki K, Apadula N, Aphecetche L, ... ... Edwards S, et al. Measurements of Elliptic and Triangular Flow in High-Multiplicity 3He+Au Collisions at √(s(NN))=200 GeV. Physical Review Letters. 115: 142301. PMID 26551807 DOI: 10.1103/PhysRevLett.115.142301  0.32
2015 Edwards SJ, van Velthoven MH, Crawford F. A Mixed Treatment Comparison (Mtc) to Compare the Efficacy of Anti-Thrombotic Agents in Treatment and Secondary Prevention of Venous Thromboembolism (Vte) in Patients with Deep Vein Thrombosis (Dvt). Value in Health : the Journal of the International Society For Pharmacoeconomics and Outcomes Research. 18: A376. PMID 26532122 DOI: 10.1016/j.jval.2015.09.783  0.32
2015 Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. PMID 26518740 DOI: 10.1016/j.ympev.2015.10.027  1
2015 Moore TY, Organ CL, Edwards SV, Biewener AA, Tabin CJ, Jenkins FA, Cooper KL. Multiple Phylogenetically Distinct Events Shaped the Evolution of Limb Skeletal Morphologies Associated with Bipedalism in the Jerboas. Current Biology : Cb. 25: 2785-94. PMID 26455300 DOI: 10.1016/j.cub.2015.09.037  1
2015 Liu L, Edwards SV. Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree". Science (New York, N.Y.). 350: 171. PMID 26450203 DOI: 10.1126/science.aaa7343  1
2015 Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/science.aab1578  1
2015 Dierickx EG, Shultz AJ, Sato F, Hiraoka T, Edwards SV. Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: implications for conservation. Evolutionary Applications. 8: 662-78. PMID 26240604 DOI: 10.1111/eva.12274  0.56
2015 Miller HC, O'Meally D, Ezaz T, Amemiya C, Marshall-Graves JA, Edwards S. Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus. G3 (Bethesda, Md.). PMID 25953959 DOI: 10.1534/g3.115.017467  1
2015 Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Estimating phylogenetic trees from genome-scale data. Annals of the New York Academy of Sciences. PMID 25873435 DOI: 10.1111/nyas.12747  1
2015 Webb AE, Gerek ZN, Morgan CC, Walsh TA, Loscher CE, Edwards SV, O'Connell MJ. Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response. Molecular Biology and Evolution. 32: 1717-29. PMID 25758009 DOI: 10.1093/molbev/msv051  1
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Edwards SV, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/s13742-014-0038-1  1
2015 Lowe CB, Clarke JA, Baker AJ, Haussler D, Edwards SV. Feather development genes and associated regulatory innovation predate the origin of Dinosauria. Molecular Biology and Evolution. 32: 23-8. PMID 25415961 DOI: 10.1093/molbev/msu309  1
2015 Adeleye Y, Andersen M, Clewell R, Davies M, Dent M, Edwards S, Fowler P, Malcomber S, Nicol B, Scott A, Scott S, Sun B, Westmoreland C, White A, Zhang Q, et al. Implementing Toxicity Testing in the 21st Century (TT21C): Making safety decisions using toxicity pathways, and progress in a prototype risk assessment. Toxicology. 332: 102-11. PMID 24582757 DOI: 10.1016/j.tox.2014.02.007  1
2015 Smith NA, Chiappe LM, Clarke JA, Edwards SV, Nesbitt SJ, Norell MA, Stidham TA, Turner A, Tuinen MV, Vinther J, Xu X. Rhetoric vs. reality: A commentary on "Bird Origins Anew" by A. Feduccia Auk. 132: 467-480. DOI: 10.1642/AUK-14-203.1  1
2015 Dierickx EG, Shultz AJ, Sato F, Hiraoka T, Edwards SV. Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: Implications for conservation Evolutionary Applications. DOI: 10.1111/eva.12274  1
2015 Balenger SL, Bonneaud C, Sefick SA, Edwards SV, Hill GE. Plumage color and pathogen-induced gene expression in a wild bird Behavioral Ecology. 26: 1100-1110. DOI: 10.1093/beheco/arv055  1
2015 Edwards SV, Shultz AJ, Campbell-Staton SC. Next-generation sequencing and the expanding domain of phylogeography Folia Zoologica. 64: 187-206.  1
2014 Janes DE, Organ CL, Stiglec R, O'Meally D, Sarre SD, Georges A, Graves JA, Valenzuela N, Literman RA, Rutherford K, Gemmell N, Iverson JB, Tamplin JW, Edwards SV, Ezaz T. Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia. Biology Letters. 10: 20140809. PMID 25540158 DOI: 10.1098/rsbl.2014.0809  0.88
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... Edwards SV, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/science.1254449  1
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Edwards SV, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/science.1253451  0.4
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Edwards SV, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/science.1251385  0.6
2014 Baldwin MW, Toda Y, Nakagita T, O'Connell MJ, Klasing KC, Misaka T, Edwards SV, Liberles SD. Sensory biology. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor. Science (New York, N.Y.). 345: 929-33. PMID 25146290 DOI: 10.1126/science.1255097  1
2014 McGlothlin JW, Chuckalovcak JP, Janes DE, Edwards SV, Feldman CR, Brodie ED, Pfrender ME, Brodie ED. Parallel evolution of tetrodotoxin resistance in three voltage-gated sodium channel genes in the garter snake Thamnophis sirtalis. Molecular Biology and Evolution. 31: 2836-46. PMID 25135948 DOI: 10.1093/molbev/msu237  1
2014 Zhang Q, Hill GE, Edwards SV, Backström N. A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines. Bmc Genomics. 15: 305. PMID 24758272 DOI: 10.1186/1471-2164-15-305  1
2014 Wu S, Zhang F, Edwards SV, Wu W, Ye J, Bi S, Ni X, Quan C, Meng J, Organ CL. The evolution of bipedalism in jerboas (rodentia: Dipodoidea): origin in humid and forested environments. Evolution; International Journal of Organic Evolution. 68: 2108-18. PMID 24628052 DOI: 10.1111/evo.12404  1
2014 Rheindt FE, Fujita MK, Wilton PR, Edwards SV. Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs. Systematic Biology. 63: 134-52. PMID 24304652 DOI: 10.1093/sysbio/syt070  1
2014 Cook JA, Edwards SV, Lacey EA, Guralnick RP, Soltis PS, Soltis DE, Welch CK, Bell KC, Galbreath KE, Himes C, Allen JM, Heath TA, Carnaval AC, Cooper KL, Liu M, et al. Natural history collections as emerging resources for innovative education Bioscience. 64: 725-734. DOI: 10.1093/biosci/biu096  1
2013 Ezaz T, Azad B, O'Meally D, Young MJ, Matsubara K, Edwards MJ, Zhang X, Holleley CE, Deakin JE, Marshall Graves JA, Georges A, Edwards SV, Sarre SD. Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1. Bmc Genomics. 14: 899. PMID 24344927 DOI: 10.1186/1471-2164-14-899  1
2013 Edwards SV. Next-generation QTL mapping: crowdsourcing SNPs, without pedigrees. Molecular Ecology. 22: 3885-87. PMID 24058928 DOI: 10.1111/mec.12401  1
2013 Dennehy JJ, Duffy S, O'Keefe KJ, Edwards SV, Turner PE. Frequent coinfection reduces RNA virus population genetic diversity. The Journal of Heredity. 104: 704-12. PMID 23828608 DOI: 10.1093/jhered/est038  1
2013 Raposo do Amaral F, Albers PK, Edwards SV, Miyaki CY. Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza). Molecular Ecology. 22: 3996-4013. PMID 23786305 DOI: 10.1111/mec.12361  1
2013 Alcaide M, Liu M, Edwards SV. Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3. Peerj. 1: e86. PMID 23781408 DOI: 10.7717/peerj.86  1
2013 Janes DE, Elsey RM, Langan EM, Valenzuela N, Edwards SV. Sex-biased expression of sex-differentiating genes FOXL2 and FGF9 in American alligators, alligator Mississippiensis. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 7: 253-60. PMID 23689672 DOI: 10.1159/000350787  1
2013 Wu S, Song S, Liu L, Edwards SV. Reply to Gatesy and Springer: the multispecies coalescent model can effectively handle recombination and gene tree heterogeneity. Proceedings of the National Academy of Sciences of the United States of America. 110: E1180. PMID 23650651 DOI: 10.1073/pnas.1300129110  1
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Edwards SV, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/gb-2013-14-3-r28  1
2013 Backström N, Shipilina D, Blom MP, Edwards SV. Cis-regulatory sequence variation and association with Mycoplasma load in natural populations of the house finch (Carpodacus mexicanus). Ecology and Evolution. 3: 655-66. PMID 23532859 DOI: 10.1002/ece3.484  1
2013 Backström N, Zhang Q, Edwards SV. Evidence from a house finch (Haemorhous mexicanus) spleen transcriptome for adaptive evolution and biased gene conversion in passerine birds. Molecular Biology and Evolution. 30: 1046-50. PMID 23429858 DOI: 10.1093/molbev/mst033  1
2013 Kültz D, Clayton DF, Robinson GE, Albertson C, Carey HV, Cummings ME, Dewar K, Edwards SV, Hofmann HA, Gross LJ, Kingsolver JG, Meaney MJ, Schlinger BA, Shingleton AW, Sokolowski MB, et al. New frontiers for organismal biology Bioscience. 63: 464-471. DOI: 10.1525/bio.2013.63.6.8  1
2013 Joseph L, Edwards SV, McLean AJ. The Maluridae: Inferring avian biology and evolutionary history from DNA sequences Emu. 113: 195-207. DOI: 10.1071/MU12081  1
2012 Campbell-Staton SC, Goodman RM, Backström N, Edwards SV, Losos JB, Kolbe JJ. Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis). Ecology and Evolution. 2: 2274-84. PMID 23139885 DOI: 10.1002/ece3.324  1
2012 Küpper C, Edwards SV, Kosztolányi A, Alrashidi M, Burke T, Herrmann P, Argüelles-Tico A, Amat JA, Amezian M, Rocha A, Hötker H, Ivanov A, Chernicko J, Székely T. High gene flow on a continental scale in the polyandrous Kentish plover Charadrius alexandrinus. Molecular Ecology. 21: 5864-79. PMID 23094674 DOI: 10.1111/mec.12064  1
2012 Wu S, Wu W, Zhang F, Ye J, Ni X, Sun J, Edwards SV, Meng J, Organ CL. Molecular and paleontological evidence for a post-Cretaceous origin of rodents. Plos One. 7: e46445. PMID 23071573 DOI: 10.1371/journal.pone.0046445  1
2012 Song S, Liu L, Edwards SV, Wu S. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proceedings of the National Academy of Sciences of the United States of America. 109: 14942-7. PMID 22930817 DOI: 10.1073/pnas.1211733109  1
2012 Zhang Q, Edwards SV. The evolution of intron size in amniotes: a role for powered flight? Genome Biology and Evolution. 4: 1033-43. PMID 22930760 DOI: 10.1093/gbe/evs070  1
2012 Küpper C, Augustin J, Edwards S, Székely T, Kosztolányi A, Burke T, Janes DE. Triploid plover female provides support for a role of the W chromosome in avian sex determination. Biology Letters. 8: 787-9. PMID 22647929 DOI: 10.1098/rsbl.2012.0329  1
2012 Bonneaud C, Balenger SL, Zhang J, Edwards SV, Hill GE. Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird. Molecular Ecology. 21: 2628-39. PMID 22512302 DOI: 10.1111/j.1365-294X.2012.05551.x  1
2012 Anderson CN, Liu L, Pearl D, Edwards SV. Tangled trees: the challenge of inferring species trees from coalescent and noncoalescent genes. Methods in Molecular Biology (Clifton, N.J.). 856: 3-28. PMID 22399453 DOI: 10.1007/978-1-61779-585-5_1  1
2012 Delaney NF, Balenger S, Bonneaud C, Marx CJ, Hill GE, Ferguson-Noel N, Tsai P, Rodrigo A, Edwards SV. Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. Plos Genetics. 8: e1002511. PMID 22346765 DOI: 10.1371/journal.pgen.1002511  1
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Edwards SV, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/gb-2012-13-1-415  1
2012 Lee JY, Joseph L, Edwards SV. A species tree for the Australo-Papuan Fairy-wrens and allies (Aves: Maluridae). Systematic Biology. 61: 253-71. PMID 21978990 DOI: 10.1093/sysbio/syr101  1
2012 do Amaral FR, Edwards SV, Miyaki CY. Eight anonymous nuclear loci for the squamate antbird (Myrmeciza squamosa), cross-amplifiable in other species of typical antbirds (Aves, Thamnophilidae) Conservation Genetics Resources. 4: 645-647. DOI: 10.1007/s12686-012-9612-y  1
2012 Wingfield J, Edwards S, Miyaki C. Editorial of the Proceedings of the 25th International Ornithological Congress Journal of Ornithology. 153: 1. DOI: 10.1007/s10336-012-0870-y  1
2011 Rheindt FE, Székely T, Edwards SV, Lee PL, Burke T, Kennerley PR, Bakewell DN, Alrashidi M, Kosztolányi A, Weston MA, Liu WT, Lei WP, Shigeta Y, Javed S, Zefania S, et al. Conflict between genetic and phenotypic differentiation: the evolutionary history of a 'lost and rediscovered' shorebird. Plos One. 6: e26995. PMID 22096515 DOI: 10.1371/journal.pone.0026995  1
2011 Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, ... ... Edwards SV, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 477: 587-91. PMID 21881562 DOI: 10.1038/nature10390  1
2011 Fujita MK, Edwards SV, Ponting CP. The Anolis lizard genome: an amniote genome without isochores. Genome Biology and Evolution. 3: 974-84. PMID 21795750 DOI: 10.1093/gbe/evr072  1
2011 Castoe TA, Bronikowski AM, Brodie ED, Edwards SV, Pfrender ME, Shapiro MD, Pollock DD, Warren WC. A proposal to sequence the genome of a garter snake (Thamnophis sirtalis). Standards in Genomic Sciences. 4: 257-70. PMID 21677863 DOI: 10.4056/sigs.1664145  1
2011 Bonneaud C, Balenger SL, Russell AF, Zhang J, Hill GE, Edwards SV. Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird. Proceedings of the National Academy of Sciences of the United States of America. 108: 7866-71. PMID 21525409 DOI: 10.1073/pnas.1018580108  1
2011 Vo AT, Bank MS, Shine JP, Edwards SV. Temporal increase in organic mercury in an endangered pelagic seabird assessed by century-old museum specimens. Proceedings of the National Academy of Sciences of the United States of America. 108: 7466-71. PMID 21502496 DOI: 10.1073/pnas.1013865108  1
2011 Alcaide M, Edwards SV. Molecular evolution of the toll-like receptor multigene family in birds. Molecular Biology and Evolution. 28: 1703-15. PMID 21239391 DOI: 10.1093/molbev/msq351  1
2011 Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV. Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor. Genome Biology and Evolution. 3: 102-13. PMID 21183607 DOI: 10.1093/gbe/evq087  1
2011 Janes DE, Valenzuela N, Ezaz T, Amemiya C, Edwards SV. Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries. Journal of Biomedicine & Biotechnology. 2011: 132975. PMID 20981143 DOI: 10.1155/2011/132975  1
2011 Rheindt FE, Edwards SV. Genetic introgression: An integral but neglected component of speciation in birds Auk. 128: 620-632. DOI: 10.1525/auk.2011.128.4.620  1
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  1
2011 Organ CL, Edwards SV. Major Events in Avian Genome Evolution Living Dinosaurs: the Evolutionary History of Modern Birds. 325-337. DOI: 10.1002/9781119990475.ch13  1
2011 Organ CL, Rasmussen MD, Baldwin MW, Kellis M, Edwards SV. Phylogenomic Approach to the Evolutionary Dynamics of Gene Duplication in Birds Evolution After Gene Duplication. 253-268. DOI: 10.1002/9780470619902.ch14  1
2010 Liu L, Yu L, Edwards SV. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. Bmc Evolutionary Biology. 10: 302. PMID 20937096 DOI: 10.1186/1471-2148-10-302  1
2010 Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV. Genome evolution in Reptilia, the sister group of mammals. Annual Review of Genomics and Human Genetics. 11: 239-64. PMID 20590429 DOI: 10.1146/annurev-genom-082509-141646  1
2010 O'Keefe KJ, Silander OK, McCreery H, Weinreich DM, Wright KM, Chao L, Edwards SV, Remold SK, Turner PE. Geographic differences in sexual reassortment in RNA phage. Evolution; International Journal of Organic Evolution. 64: 3010-23. PMID 20500219 DOI: 10.1111/j.1558-5646.2010.01040.x  1
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, ... ... Edwards SV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/nature08819  1
2010 Balakrishnan CN, Ekblom R, Völker M, Westerdahl H, Godinez R, Kotkiewicz H, Burt DW, Graves T, Griffin DK, Warren WC, Edwards SV. Gene duplication and fragmentation in the zebra finch major histocompatibility complex. Bmc Biology. 8: 29. PMID 20359332 DOI: 10.1186/1741-7007-8-29  1
2010 Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/j.1365-294X.2009.04487.x  1
2010 Balakrishnan CN, Edwards SV, Clayton DF. The Zebra Finch genome and avian genomics in the wild Emu. 110: 233-241. DOI: 10.1071/MU09087  1
2009 Liu L, Yu L, Pearl DK, Edwards SV. Estimating species phylogenies using coalescence times among sequences. Systematic Biology. 58: 468-77. PMID 20525601 DOI: 10.1093/sysbio/syp031  1
2009 Liu L, Edwards SV. Phylogenetic analysis in the anomaly zone. Systematic Biology. 58: 452-60. PMID 20525599 DOI: 10.1093/sysbio/syp034  1
2009 Janes DE, Organ CL, Edwards SV. Variability in sex-determining mechanisms influences genome complexity in reptilia. Cytogenetic and Genome Research. 127: 242-8. PMID 20203474 DOI: 10.1159/000293283  1
2009 Chapus C, Edwards SV. Genome evolution in Reptilia: In silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird Bmc Genomics. 10. PMID 19607659 DOI: 10.1186/1471-2164-10-S2-S8  1
2009 Edwards S, Bensch S. Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008 Molecular Ecology. 18: 2930-2933. PMID 19552688 DOI: 10.1111/j.1365-294X.2009.04270.x  1
2009 Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV. Coalescent methods for estimating phylogenetic trees Molecular Phylogenetics and Evolution. 53: 320-328. PMID 19501178 DOI: 10.1016/j.ympev.2009.05.033  1
2009 Edwards SV. Natural selection and phylogenetic analysis Proceedings of the National Academy of Sciences of the United States of America. 106: 8799-8800. PMID 19470454 DOI: 10.1073/pnas.0904103106  1
2009 Silva MC, Edwards SV. Structure and evolution of a new avian MHC class II B gene in a sub-antarctic seabird, the thin-billed prion (Procellariiformes: Pachyptila belcheri) Journal of Molecular Evolution. 68: 279-291. PMID 19209378 DOI: 10.1007/s00239-009-9200-2  1
2009 Edwards SV. Is a new and general theory of molecular systematics emerging? Evolution. 63: 1-19. PMID 19146594 DOI: 10.1111/j.1558-5646.2008.00549.x  1
2009 Balakrishnan CN, Edwards SV. Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata). Genetics. 181: 645-60. PMID 19047416 DOI: 10.1534/genetics.108.094250  1
2009 Janes DE, Ezaz T, Marshall Graves JA, Edwards SV. Recombination and nucleotide diversity in the sex chromosomal pseudoautosomal region of the emu, Dromaius novaehollandiae. The Journal of Heredity. 100: 125-36. PMID 18775880 DOI: 10.1093/jhered/esn065  1
2009 Brito PH, Edwards SV. Multilocus phylogeography and phylogenetics using sequence-based markers Genetica. 135: 439-455. PMID 18651229 DOI: 10.1007/s10709-008-9293-3  1
2009 Kearns AM, Joseph L, Edwards SV, Double MC. Inferring the phylogeography and evolutionary history of the splendid fairy-wren Malurus splendens from mitochondrial DNA and spectrophotometry Journal of Avian Biology. 40: 7-17. DOI: 10.1111/j.1600-048X.2008.04383.x  1
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, ... ... Edwards S, ... ... Edwards SV, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/jhered/esp086  0.48
2009 Alcaide M, Edwards SV, Cadahía L, Negro JJ. MHC class I genes of birds of prey: Isolation, polymorphism and diversifying selection Conservation Genetics. 10: 1349-1355. DOI: 10.1007/s10592-008-9653-7  1
2008 Janes DE, Ezaz T, Graves JA, Edwards SV. Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals. Integrative and Comparative Biology. 48: 505-11. PMID 21669811 DOI: 10.1093/icb/icn024  1
2008 Organ CL, Moreno RG, Edwards SV. Three tiers of genome evolution in reptiles. Integrative and Comparative Biology. 48: 494-504. PMID 21669810 DOI: 10.1093/icb/icn046  0.88
2008 Lee JY, Edwards SV. Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution; International Journal of Organic Evolution. 62: 3117-34. PMID 19087188 DOI: 10.1111/j.1558-5646.2008.00543.x  1
2008 Brumfield RT, Liu L, Lum DE, Edwards SV. Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data Systematic Biology. 57: 719-731. PMID 18853359 DOI: 10.1080/10635150802422290  1
2008 Thomson RC, Shedlock AM, Edwards SV, Shaffer HB. Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles. Molecular Phylogenetics and Evolution. 49: 514-25. PMID 18761096 DOI: 10.1016/j.ympev.2008.08.006  1
2008 Shedlock AM, Janes DE, Edwards SV. Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles. Methods in Molecular Biology (Clifton, N.J.). 422: 91-117. PMID 18629663 DOI: 10.1007/978-1-59745-581-7_7  1
2008 Alcaide M, Edwards SV, Negro JJ, Serrano D, Tella JL. Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni) Molecular Ecology. 17: 2652-2665. PMID 18489548 DOI: 10.1111/j.1365-294X.2008.03791.x  1
2008 Liu L, Pearl DK, Brumfield RT, Edwards SV. Estimating species trees using multiple-allele DNA sequence data Evolution. 62: 2080-2091. PMID 18462214 DOI: 10.1111/j.1558-5646.2008.00414.x  1
2008 Causey D, Edwards SV. Ecology of avian influenza virus in birds Journal of Infectious Diseases. 197: S29-S33. PMID 18269325 DOI: 10.1086/524991  1
2008 Edwards SV. A smörgåsbord of markers for avian ecology and evolution Molecular Ecology. 17: 945-946. PMID 18221271 DOI: 10.1111/j.1365-294X.2007.03644.x  1
2008 Limaye N, Belobrajdic KA, Wandstrat AE, Bonhomme F, Edwards SV, Wakeland EK. Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations Genes and Immunity. 9: 61-68. PMID 18094711 DOI: 10.1038/sj.gene.6364446  1
2008 Bonneaud C, Burnside J, Edwards SV. High-speed developments in avian genomics Bioscience. 58: 587-595. DOI: 10.1641/B580706  1
2008 Organ CL, Moreno RG, Edwards SV. Three tiers of genome evolution in reptiles Integrative and Comparative Biology. 48: 494-504. DOI: 10.1093/icb/icn046  1
2007 Alcaide M, Edwards SV, Negro JJ. Characterization, polymorphism, and evolution of MHC class II B genes in birds of prey Journal of Molecular Evolution. 65: 541-554. PMID 17925996 DOI: 10.1007/s00239-007-9033-9  1
2007 Edwards SV, Liu L, Pearl DK. High-resolution species trees without concatenation Proceedings of the National Academy of Sciences of the United States of America. 104: 5936-5941. PMID 17392434 DOI: 10.1073/pnas.0607004104  1
2007 Organ CL, Shedlock AM, Meade A, Pagel M, Edwards SV. Origin of avian genome size and structure in non-avian dinosaurs. Nature. 446: 180-4. PMID 17344851 DOI: 10.1038/nature05621  1
2007 Edwards SV. Genomics and ornithology Journal of Ornithology. 148: S27-S33. DOI: 10.1007/s10336-007-0238-x  1
2005 Edwards SV, Kingan SB, Calkins JD, Balakrishnan CN, Jennings WB, Swanson WJ, Sorenson MD. Speciation in birds: genes, geography, and sexual selection. Proceedings of the National Academy of Sciences of the United States of America. 102: 6550-7. PMID 15851678 DOI: 10.1073/pnas.0501846102  1
2000 Hoekstra HE, Edwards SV. Multiple origins of XY female mice (genus Akodon): phylogenetic and chromosomal evidence. Proceedings. Biological Sciences / the Royal Society. 267: 1825-31. PMID 11052532 DOI: 10.1098/rspb.2000.1217  1
2000 Hess CM, Gasper J, Hoekstra HE, Hill CE, Edwards SV. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Research. 10: 613-23. PMID 10810083 DOI: 10.1101/gr.10.5.613  1
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