Kenneth M. Olsen, PhD - Publications

Biology Washington University, Saint Louis, St. Louis, MO 
Plant evolutionary biology, genetics

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Neik TX, Chai JY, Tan SY, Sudo MPS, Cui Y, Jayaraj J, Teo SS, Olsen KM, Song BK. When West Meets East: The Origins and Spread of Weedy Rice Between Continental and Island Southeast Asia. G3 (Bethesda, Md.). PMID 31292156 DOI: 10.1534/g3.119.400021  0.44
2019 Vigueira CC, Qi X, Song BK, Li LF, Caicedo AL, Jia Y, Olsen KM. Call of the wild rice: shapes weedy rice evolution in Southeast Asia. Evolutionary Applications. 12: 93-104. PMID 30622638 DOI: 10.1111/eva.12581  0.8
2018 Huang Z, Kelly S, Matsuo R, Li LF, Li Y, Olsen KM, Jia Y, Caicedo AL. The Role of Standing Variation in the Evolution of Weediness Traits in South Asian Weedy Rice ( spp.. G3 (Bethesda, Md.). PMID 30275171 DOI: 10.1534/g3.118.200605  0.8
2018 Kooyers NJ, Hartman Bakken B, Ungerer MC, Olsen KM. Freeze-induced cyanide toxicity does not maintain the cyanogenesis polymorphism in white clover (Trifolium repens). American Journal of Botany. PMID 30080261 DOI: 10.1002/ajb2.1134  1
2018 Olsen KM, Small LL. Micro- and macroevolutionary adaptation through repeated loss of a complete metabolic pathway. The New Phytologist. PMID 29708583 DOI: 10.1111/nph.15184  0.52
2017 Li LF, Li YL, Jia Y, Caicedo AL, Olsen KM. Signatures of adaptation in the weedy rice genome. Nature Genetics. PMID 28369039 DOI: 10.1038/ng.3825  0.8
2017 Huang Z, Young ND, Reagon M, Hyma KE, Olsen KM, Jia Y, Caicedo AL. All roads lead to weediness: patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza. Molecular Ecology. PMID 28345200 DOI: 10.1111/mec.14120  0.8
2016 Cui Y, Song BK, Li LF, Li YL, Huang Z, Caicedo AL, Jia Y, Olsen KM. Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice. G3 (Bethesda, Md.). PMID 27729434 DOI: 10.1534/g3.116.035881  0.8
2016 Vigueira CC, Small LL, Olsen KM. Long-term balancing selection at the Phosphorus Starvation Tolerance 1 (PSTOL1) locus in wild, domesticated and weedy rice (Oryza). Bmc Plant Biology. 16: 101. PMID 27101874 DOI: 10.1186/s12870-016-0783-7  1
2015 Li LF, Liu B, Olsen KM, Wendel JF. Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops-Triticum complex. The New Phytologist. PMID 26147650 DOI: 10.1111/nph.13563  0.44
2015 Qi X, Liu Y, Vigueira CC, Young ND, Caicedo AL, Jia Y, Gealy DR, Olsen KM. More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms. Molecular Ecology. PMID 26031196 DOI: 10.1111/mec.13256  1
2015 Cervantes-Alcayde MA, Olson ME, Olsen KM, Eguiarte LE. Apparent similarity, underlying homoplasy: Morphology and molecular phylogeny of the North American clade of Manihot. American Journal of Botany. 102: 520-32. PMID 25878086 DOI: 10.3732/ajb.1500063  0.6
2015 Liu Y, Qi X, Gealy D, Olsen KM, Caicedo AL, Jia Y. QTLs Analysis for Resistance to Blast Disease in US Weedy Rice. Molecular Plant-Microbe Interactions : Mpmi. PMID 25761210 DOI: 10.1094/MPMI-12-14-0386-R  1
2015 Li LF, Liu B, Olsen KM, Wendel JF. A re-evaluation of the homoploid hybrid origin of Aegilops tauschii, the donor of the wheat D-subgenome. The New Phytologist. PMID 25612061 DOI: 10.1111/nph.13294  0.44
2015 Liu Y, Qi X, Young ND, Olsen KM, Caicedo AL, Jia Y. Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety Molecular Breeding. 35. DOI: 10.1007/s11032-015-0256-y  1
2014 Thurber CS, Reagon M, Olsen KM, Jia Y, Caicedo AL. The evolution of flowering strategies in US weedy rice. American Journal of Botany. 101: 1737-47. PMID 25326616 DOI: 10.3732/ajb.1400154  1
2014 Song BK, Chuah TS, Tam SM, Olsen KM. Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia. Molecular Ecology. 23: 5003-17. PMID 25231087 DOI: 10.1111/mec.12922  1
2014 Kooyers NJ, Olsen KM. Adaptive cyanogenesis clines evolve recurrently through geographical sorting of existing gene deletions. Journal of Evolutionary Biology. 27: 2554-8. PMID 25146520 DOI: 10.1111/jeb.12466  1
2014 Waselkov KE, Olsen KM. Population genetics and origin of the native North American agricultural weed waterhemp (Amaranthus tuberculatus; Amaranthaceae). American Journal of Botany. 101: 1726-36. PMID 25091000 DOI: 10.3732/ajb.1400064  1
2014 Olsen KM, Kooyers NJ, Small LL. Adaptive gains through repeated gene loss: parallel evolution of cyanogenesis polymorphisms in the genus Trifolium (Fabaceae). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958921 DOI: 10.1098/rstb.2013.0347  1
2014 Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Climer Vigueira C, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MT, Gremillion KJ, Lucas L, ... ... Olsen KM, et al. Current perspectives and the future of domestication studies. Proceedings of the National Academy of Sciences of the United States of America. 111: 6139-46. PMID 24757054 DOI: 10.1073/pnas.1323964111  1
2014 Doust AN, Lukens L, Olsen KM, Mauro-Herrera M, Meyer A, Rogers K. Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 6178-83. PMID 24753598 DOI: 10.1073/pnas.1308940110  1
2014 Kooyers NJ, Gage LR, Al-Lozi A, Olsen KM. Aridity shapes cyanogenesis cline evolution in white clover (Trifolium repens L.). Molecular Ecology. 23: 1053-70. PMID 24438087 DOI: 10.1111/mec.12666  1
2014 Baudouin L, Gunn BF, Olsen KM. The presence of coconut in southern Panama in pre-Columbian times: clearing up the confusion. Annals of Botany. 113: 1-5. PMID 24227445 DOI: 10.1093/aob/mct244  1
2014 Awais Khan M, Olsen KM, Sovero V, Kushad MM, Korban SS. Fruit quality traits have played critical roles in domestication of the apple Plant Genome. 7. DOI: 10.3835/plantgenome2014.04.0018  1
2013 Olsen KM, Wendel JF. Crop plants as models for understanding plant adaptation and diversification. Frontiers in Plant Science. 4: 290. PMID 23914199 DOI: 10.3389/fpls.2013.00290  1
2013 Kooyers NJ, Olsen KM. Searching for the bull's eye: agents and targets of selection vary among geographically disparate cyanogenesis clines in white clover (Trifolium repens L.). Heredity. 111: 495-504. PMID 23900395 DOI: 10.1038/hdy.2013.71  1
2013 Vigueira CC, Li W, Olsen KM. The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice. Journal of Evolutionary Biology. 26: 1738-49. PMID 23859433 DOI: 10.1111/jeb.12171  1
2013 Olsen KM, Wendel JF. A bountiful harvest: genomic insights into crop domestication phenotypes. Annual Review of Plant Biology. 64: 47-70. PMID 23451788 DOI: 10.1146/annurev-arplant-050312-120048  1
2013 Vigueira CC, Olsen KM, Caicedo AL. The red queen in the corn: agricultural weeds as models of rapid adaptive evolution. Heredity. 110: 303-11. PMID 23188175 DOI: 10.1038/hdy.2012.104  1
2013 Olsen KM, Kooyers NJ, Small LL. Recurrent gene deletions and the evolution of adaptive cyanogenesis polymorphisms in white clover (Trifolium repens L.). Molecular Ecology. 22: 724-38. PMID 22694056 DOI: 10.1111/j.1365-294X.2012.05667.x  1
2012 Trejo L, Feria Arroyo TP, Olsen KM, Eguiarte LE, Arroyo B, Gruhn JA, Olson ME. Poinsettia's wild ancestor in the Mexican dry tropics: Historical, genetic, and environmental evidence. American Journal of Botany. 99: 1146-57. PMID 22763354 DOI: 10.3732/ajb.1200072  1
2012 Olsen KM. One gene's shattering effects. Nature Genetics. 44: 616-7. PMID 22641204 DOI: 10.1038/ng.2289  1
2012 Kooyers NJ, Olsen KM. Rapid evolution of an adaptive cyanogenesis cline in introduced North American white clover (Trifolium repens L.). Molecular Ecology. 21: 2455-68. PMID 22340190 DOI: 10.1111/j.1365-294X.2012.05486.x  1
2011 Lee S, Jia Y, Jia M, Gealy DR, Olsen KM, Caicedo AL. Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA. Plos One. 6: e26260. PMID 22043312 DOI: 10.1371/journal.pone.0026260  1
2011 Reagon M, Thurber CS, Olsen KM, Jia Y, Caicedo AL. The long and the short of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice. Molecular Ecology. 20: 3743-56. PMID 21854475 DOI: 10.1111/j.1365-294X.2011.05216.x  1
2011 Gunn BF, Baudouin L, Olsen KM. Independent origins of cultivated coconut (Cocos nucifera L.) in the old world tropics. Plos One. 6: e21143. PMID 21731660 DOI: 10.1371/journal.pone.0021143  1
2011 Yu G, Olsen KM, Schaal BA. Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa). The New Phytologist. 189: 593-601. PMID 20946420 DOI: 10.1111/j.1469-8137.2010.03495.x  1
2011 Yu G, Olsen KM, Schaal BA. Molecular evolution of the endosperm starch synthesis pathway genes in rice (Oryza sativa L.) and its wild ancestor, O. rufipogon L. Molecular Biology and Evolution. 28: 659-71. PMID 20829346 DOI: 10.1093/molbev/msq243  1
2010 Gross BL, Steffen FT, Olsen KM. The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene. Journal of Evolutionary Biology. 23: 2747-53. PMID 21121088 DOI: 10.1111/j.1420-9101.2010.02125.x  1
2010 Gross BL, Reagon M, Hsu SC, Caicedo AL, Jia Y, Olsen KM. Seeing red: the origin of grain pigmentation in US weedy rice. Molecular Ecology. 19: 3380-93. PMID 20584133 DOI: 10.1111/j.1365-294X.2010.04707.x  1
2010 Thurber CS, Reagon M, Gross BL, Olsen KM, Jia Y, Caicedo AL. Molecular evolution of shattering loci in U.S. weedy rice. Molecular Ecology. 19: 3271-84. PMID 20584132 DOI: 10.1111/j.1365-294X.2010.04708.x  1
2010 Reagon M, Thurber CS, Gross BL, Olsen KM, Jia Y, Caicedo AL. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. Bmc Evolutionary Biology. 10: 180. PMID 20550656 DOI: 10.1186/1471-2148-10-180  1
2010 Gross BL, Olsen KM. Genetic perspectives on crop domestication. Trends in Plant Science. 15: 529-37. PMID 20541451 DOI: 10.1016/j.tplants.2010.05.008  1
2009 Lee S, Costanzo S, Jia Y, Olsen KM, Caicedo AL. Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species. Genetics. 183: 1315-25. PMID 19822730 DOI: 10.1534/genetics.109.108266  1
2009 Gross BL, Skare KJ, Olsen KM. Novel Phr1 mutations and the evolution of phenol reaction variation in US weedy rice (Oryza sativa). The New Phytologist. 184: 842-50. PMID 19674331 DOI: 10.1111/j.1469-8137.2009.02957.x  1
2009 Gross BL, Olsen KM. Evolutionary Genomics of Weedy Rice Weedy and Invasive Plant Genomics. 83-98. DOI: 10.1002/9780813806198.ch6  1
2008 Olsen KM, Gross BL. Detecting multiple origins of domesticated crops. Proceedings of the National Academy of Sciences of the United States of America. 105: 13701-2. PMID 18784363 DOI: 10.1073/pnas.0807439105  1
2008 Olsen KM, Hsu SC, Small LL. Evidence on the molecular basis of the Ac/ac adaptive cyanogenesis polymorphism in white clover (Trifolium repens L). Genetics. 179: 517-26. PMID 18458107 DOI: 10.1534/genetics.107.080366  1
2008 Shimizu KK, Reininga JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Purugganan MD. Retraction. Science (New York, N.Y.). 320: 176. PMID 18403691 DOI: 10.1126/science.320.5873.176a  1
2008 Halsey ME, Olsen KM, Taylor NJ, Chavarriaga-Aguirre P. Reproductive biology of cassava (Manihot esculenta Crantz) and isolation of experimental field trials Crop Science. 48: 49-58. DOI: 10.2135/cropsci2007.05.0279  1
2008 Olsen KM, Ungerer MC. Freezing tolerance and cyanogenesis in white clover (Trifolium repens L. Fabaceae) International Journal of Plant Sciences. 169: 1141-1147. DOI: 10.1086/591984  1
2008 Hurtado P, Olsen KM, Buitrago C, Ospina C, Marin J, Duque M, De Vicente C, Wongtiem P, Wenzel P, Killian A, Adeleke M, Fregene M. Comparison of simple sequence repeat (SSR) and diversity array technology (DArT) markers for assessing genetic diversity in cassava (Manihot esculenta Crantz) Plant Genetic Resources: Characterisation and Utilisation. 6: 208-214. DOI: 10.1017/S1479262108994181  1
2007 Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch S, Purugganan MD. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics. 177: 2223-32. PMID 17947413 DOI: 10.1534/genetics.107.079616  1
2007 Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD. Genome-wide patterns of nucleotide polymorphism in domesticated rice. Plos Genetics. 3: 1745-56. PMID 17907810 DOI: 10.1371/journal.pgen.0030163  1
2007 Olsen KM, Sutherland BL, Small LL. Molecular evolution of the Li/li chemical defence polymorphism in white clover (Trifolium repens L.). Molecular Ecology. 16: 4180-93. PMID 17784921 DOI: 10.1111/j.1365-294X.2007.03506.x  1
2007 Olsen KM, Schaal BA. Insights on the evolution of a vegetatively propagated crop species. Molecular Ecology. 16: 2838-40. PMID 17614898 DOI: 10.1111/j.1365-294X.2007.03359.x  1
2007 Narasimhamoorthy B, Bouton JH, Olsen KM, Sledge MK. Quantitative trait loci and candidate gene mapping of aluminum tolerance in diploid alfalfa. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 901-13. PMID 17219204 DOI: 10.1007/s00122-006-0488-7  1
2007 Olsen KM, Caicedo AL, Jia Y. Evolutionary genomics of weedy rice in the USA Journal of Integrative Plant Biology. 49: 811-816. DOI: 10.1111/j.1744-7909.2007.00506.x  1
2006 Kuo HF, Olsen KM, Richards EJ. Natural variation in a subtelomeric region of Arabidopsis: implications for the genomic dynamics of a chromosome end. Genetics. 173: 401-17. PMID 16547105 DOI: 10.1534/genetics.105.055202  1
2006 Olsen KM, Caicedo AL, Polato N, McClung A, McCouch S, Purugganan MD. Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics. 173: 975-83. PMID 16547098 DOI: 10.1534/genetics.106.056473  1
2006 Olsen KM, Schaal BA. DNA sequence data and inferences on cassava's origin of domestication Documenting Domestication: New Genetic and Archaeological Paradigms. 123-133.  1
2004 Olsen KM. SNPs, SSRs and inferences on cassava's origin. Plant Molecular Biology. 56: 517-26. PMID 15630616 DOI: 10.1007/s11103-004-5043-9  1
2004 Shimizu KK, Cork JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Awadalla P, Purugganan MD. Darwinian selection on a selfing locus. Science (New York, N.Y.). 306: 2081-4. PMID 15604405 DOI: 10.1126/science.1103776  1
2004 Caicedo AL, Stinchcombe JR, Olsen KM, Schmitt J, Purugganan MD. Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. Proceedings of the National Academy of Sciences of the United States of America. 101: 15670-5. PMID 15505218 DOI: 10.1073/pnas.0406232101  1
2004 Olsen KM, Halldorsdottir SS, Stinchcombe JR, Weinig C, Schmitt J, Purugganan MD. Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles. Genetics. 167: 1361-9. PMID 15280248 DOI: 10.1534/genetics.103.024950  1
2004 Stinchcombe JR, Weinig C, Ungerer M, Olsen KM, Mays C, Halldorsdottir SS, Purugganan MD, Schmitt J. A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA. Proceedings of the National Academy of Sciences of the United States of America. 101: 4712-7. PMID 15070783 DOI: 10.1073/pnas.0306401101  1
2002 Olsen KM, Purugganan MD. Molecular evidence on the origin and evolution of glutinous rice. Genetics. 162: 941-50. PMID 12399401  1
2002 Olsen KM. Population history of Manihot esculenta (Euphorbiaceae) inferred from nuclear DNA sequences. Molecular Ecology. 11: 901-11. PMID 11975706 DOI: 10.1046/j.1365-294X.2002.01493.x  1
2002 Olsen KM, Womack A, Garrett AR, Suddith JI, Purugganan MD. Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway. Genetics. 160: 1641-50. PMID 11973317  1
2002 Bustamante CD, Nielsen R, Sawyer SA, Olsen KM, Purugganan MD, Hartl DL. The cost of inbreeding in Arabidopsis. Nature. 416: 531-4. PMID 11932744 DOI: 10.1038/416531a  1
2001 Olsen KM, Schaal BA. Microsatellite variation in cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: Further evidence for a southern Amazonian origin of domestication American Journal of Botany. 88: 131-142.  1
2000 Schaal BA, Olsen KM. Gene genealogies and population variation in plants. Proceedings of the National Academy of Sciences of the United States of America. 97: 7024-9. PMID 10860966 DOI: 10.1073/pnas.97.13.7024  1
1999 Olsen KM. Minisatellite variation in a single-copy nuclear gene: Phylogenetic assessment of repeat length homoplasy and mutational mechanism [1] Molecular Biology and Evolution. 16: 1406-1409. PMID 10563019  1
1999 Olsen KM, Schaal BA. Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proceedings of the National Academy of Sciences of the United States of America. 96: 5586-91. PMID 10318928 DOI: 10.1073/pnas.96.10.5586  1
1998 Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA. Phylogeographic studies in plants: Problems and prospects Molecular Ecology. 7: 465-474. DOI: 10.1046/j.1365-294x.1998.00318.x  1
1997 Olsen KM. Pollination effectiveness and pollinator importance in a population of Heterotheca subaxillaris (Asteraceae) Oecologia. 109: 114-121.  1
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