Year |
Citation |
Score |
2024 |
Bolten S, Lott TT, Ralyea RD, Gianforte A, Trmcic A, Orsi RH, Martin NH, Wiedmann M. Intensive Environmental Sampling and Whole Genome Sequence-based Characterization of Listeria in Small- and Medium-sized Dairy Facilities Reveal Opportunities for Simplified and Size-appropriate Environmental Monitoring Strategies. Journal of Food Protection. 87: 100254. PMID 38417482 DOI: 10.1016/j.jfp.2024.100254 |
0.472 |
|
2023 |
Orsi RH, Liao J, Carlin CR, Wiedmann M. Taxonomy, ecology, and relevance to food safety of the genus with a particular consideration of new species described between 2010 and 2022. Mbio. e0093823. PMID 38126771 DOI: 10.1128/mbio.00938-23 |
0.425 |
|
2023 |
Bardsley CA, Orsi RH, Clark S, Murphy CM, McEntire JC, Wiedmann M, Strawn LK. Role of Whole Genome Sequencing in Assessing Resident and Transient Listeria monocytogenes in a Produce Packinghouse. Journal of Food Protection. 100201. PMID 38036175 DOI: 10.1016/j.jfp.2023.100201 |
0.76 |
|
2023 |
Prinčič L, Orsi RH, Martin NH, Wiedmann M, Trmčić A. Phenotypic and genomic characterization of Klebsiella pneumoniae ssp. pneumoniae and Rahnella inusitata strains reveals no clear association between genetic content and ropy phenotype. Journal of Dairy Science. PMID 37944807 DOI: 10.3168/jds.2023-23922 |
0.503 |
|
2022 |
Cohn AR, Orsi RH, Carroll LM, Liao J, Wiedmann M, Cheng RA. serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle. Frontiers in Microbiology. 13: 1005215. PMID 36532462 DOI: 10.3389/fmicb.2022.1005215 |
0.587 |
|
2022 |
Sullivan G, Orsi RH, Estrada E, Strawn L, Wiedmann M. Whole-Genome Sequencing-Based Characterization of Isolates from Produce Packinghouses and Fresh-Cut Facilities Suggests Both Persistence and Reintroduction of Fully Virulent L. monocytogenes. Applied and Environmental Microbiology. e0117722. PMID 36286532 DOI: 10.1128/aem.01177-22 |
0.747 |
|
2022 |
Chen R, Orsi RH, Guariglia-Oropeza V, Wiedmann M. Manuscript type: Research Paper Development of a modeling tool to assess and reduce regulatory and recall risks for cold-smoked salmon due to Listeria monocytogenes contamination. Journal of Food Protection. PMID 35723598 DOI: 10.4315/JFP-22-025 |
0.365 |
|
2022 |
Carlin CR, Liao J, Hudson LK, Peters TL, Denes TG, Orsi RH, Guo X, Wiedmann M. Soil Collected in the Great Smoky Mountains National Park Yielded a Novel Species, . Microbiology Spectrum. 10: e0044222. PMID 35658601 DOI: 10.1128/spectrum.00442-22 |
0.569 |
|
2022 |
Cheng RA, Orsi RH, Wiedmann M. The Number and Type of Chaperone-Usher Fimbriae Reflect Phylogenetic Clade Rather than Host Range in Salmonella. Msystems. e0011522. PMID 35467401 DOI: 10.1128/msystems.00115-22 |
0.529 |
|
2022 |
Chen T, Orsi RH, Chen R, Gunderson M, Roof S, Wiedmann M, Childs-Sanford SE, Cummings KJ. Characterization of Listeria monocytogenes isolated from wildlife in central New York. Veterinary Medicine and Science. PMID 35113496 DOI: 10.1002/vms3.758 |
0.416 |
|
2022 |
Chen R, Cheng RA, Wiedmann M, Orsi RH. Development of a Genomics-Based Approach To Identify Putative Hypervirulent Nontyphoidal Salmonella Isolates: Salmonella enterica Serovar Saintpaul as a Model. Msphere. e0073021. PMID 34986312 DOI: 10.1128/msphere.00730-21 |
0.549 |
|
2021 |
Cohn AR, Orsi RH, Carroll LM, Chen R, Wiedmann M, Cheng RA. Characterization of Basal Transcriptomes Identifies Potential Metabolic and Virulence-Associated Adaptations Among Diverse Nontyphoidal Serovars. Frontiers in Microbiology. 12: 730411. PMID 34721328 DOI: 10.3389/fmicb.2021.730411 |
0.541 |
|
2021 |
Win AT, Supa-Amornkul S, Orsi RH, Carey JH, Wolfgang WJ, Chaturongakul S. Sequence Analyses and Phenotypic Characterization Revealed Multidrug Resistant Gene Insertions in the Genomic Region Encompassing Phase 2 Flagellin Encoding Genes in Monophasic Variant Serovar 4,5,12:i:- Isolates From Various Sources in Thailand. Frontiers in Microbiology. 12: 720604. PMID 34675896 DOI: 10.3389/fmicb.2021.720604 |
0.359 |
|
2021 |
Kipper D, Orsi RH, Carroll LM, Mascitti AK, Streck AF, Fonseca ASK, Ikuta N, Tondo EC, Wiedmann M, Lunge VR. Recent Evolution and Genomic Profile of Serovar Heidelberg Isolates from Poultry Flocks in Brazil. Applied and Environmental Microbiology. AEM0103621. PMID 34406824 DOI: 10.1128/AEM.01036-21 |
0.559 |
|
2021 |
Carlin CR, Liao J, Weller DL, Guo X, Orsi R, Wiedmann M. Corrigendum: sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., isolated from agricultural water and natural environments. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34181516 DOI: 10.1099/ijsem.0.004885 |
0.668 |
|
2021 |
Carlin CR, Liao J, Weller D, Guo X, Orsi R, Wiedmann M. sp. nov., sp. nov., sp. nov. and sp. nov., isolated from agricultural water and natural environments. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 33999788 DOI: 10.1099/ijsem.0.004795 |
0.754 |
|
2021 |
Orsi RH, Chaturongakul S, Oliver HF, Ponnala L, Gaballa A, Wiedmann M. Alternative σ Factors Regulate Overlapping as Well as Distinct Stress Response and Metabolic Functions in under Stationary Phase Stress Condition. Pathogens (Basel, Switzerland). 10. PMID 33915780 DOI: 10.3390/pathogens10040411 |
0.5 |
|
2021 |
Orsi RH, Jagadeesan B, Baert L, Wiedmann M. Identification of closely related Listeria monocytogenes isolates with no apparent evidence for a common source or location: a retrospective WGS analysis. Journal of Food Protection. PMID 33561192 DOI: 10.4315/JFP-20-417 |
0.501 |
|
2020 |
Chen R, Skeens J, Orsi RH, Wiedmann M, Guariglia-Oropeza V. Pre-growth conditions and strain diversity affect nisin treatment efficacy against Listeria monocytogenes on cold-smoked salmon. International Journal of Food Microbiology. 333: 108793. PMID 32763758 DOI: 10.1016/J.Ijfoodmicro.2020.108793 |
0.545 |
|
2020 |
Liao J, Orsi RH, Carroll LM, Wiedmann M. Comparative genomics reveals different population structures associated with host and geographic origin in antimicrobial-resistant Salmonella enterica. Environmental Microbiology. PMID 32337816 DOI: 10.1111/1462-2920.15014 |
0.609 |
|
2020 |
Beno SM, Cheng RA, Orsi RH, Duncan DR, Guo X, Kovac J, Carroll LM, Martin NH, Wiedmann M. Paenibacillus odorifer, the Predominant Species Isolated from Milk in the United States, Demonstrates Genetic and Phenotypic Conservation of Psychrotolerance but Clade-Associated Differences in Nitrogen Metabolic Pathways. Msphere. 5. PMID 31969477 DOI: 10.1128/mSphere.00739-19 |
0.561 |
|
2020 |
Harrand AS, Jagadeesan B, Baert L, Wiedmann M, Orsi RH. Evolution of in a food-processing plant involves limited single nucleotide substitutions, but considerable diversification by gain and loss of prophages. Applied and Environmental Microbiology. PMID 31900305 DOI: 10.1128/Aem.02493-19 |
0.594 |
|
2019 |
Tang S, Orsi RH, Luo H, Ge C, Zhang G, Baker RC, Stevenson A, Wiedmann M. Assessment and Comparison of Molecular Subtyping and Characterization Methods for . Frontiers in Microbiology. 10: 1591. PMID 31354679 DOI: 10.3389/Fmicb.2019.01591 |
0.493 |
|
2019 |
Liu Y, Orsi RH, Gaballa A, Wiedmann M, Boor KJ, Guariglia-Oropeza V. Systematic review of the σ regulon supports a role in stress response, virulence and metabolism. Future Microbiology. PMID 31271064 DOI: 10.2217/Fmb-2019-0072 |
0.496 |
|
2019 |
Beno SM, Orsi RH, Cheng RA, Kent DJ, Kovac J, Duncan DR, Martin NH, Wiedmann M. Corrigendum: Genes Associated With Psychrotolerant Group Isolates. Frontiers in Microbiology. 10: 1323. PMID 31249565 DOI: 10.3389/Fmicb.2019.01323 |
0.525 |
|
2019 |
Liao J, Orsi RH, Carroll LM, Kovac J, Ou H, Zhang H, Wiedmann M. Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica. Bmc Evolutionary Biology. 19: 132. PMID 31226931 DOI: 10.1186/S12862-019-1457-5 |
0.562 |
|
2019 |
Jagadeesan B, Baert L, Wiedmann M, Orsi RH. Comparative Analysis of Tools and Approaches for Source Tracking in a Food Facility Using Whole-Genome Sequence Data. Frontiers in Microbiology. 10: 947. PMID 31143162 DOI: 10.3389/Fmicb.2019.00947 |
0.605 |
|
2019 |
Reichler SJ, Martin NH, Evanowski RL, Kovac J, Wiedmann M, Orsi RH. A century of gray: A genomic locus found in 2 distinct Pseudomonas spp. is associated with historical and contemporary color defects in dairy products worldwide. Journal of Dairy Science. PMID 31128867 DOI: 10.3168/Jds.2018-16192 |
0.585 |
|
2019 |
Beno SM, Orsi RH, Cheng RA, Kent DJ, Kovac J, Duncan DR, Martin NH, Wiedmann M. Genes Associated With Psychrotolerant Group Isolates. Frontiers in Microbiology. 10: 662. PMID 30984157 DOI: 10.3389/Fmicb.2019.00662 |
0.647 |
|
2018 |
Guariglia-Oropeza V, Orsi RH, Guldimann C, Wiedmann M, Boor KJ. TheBile Stimulon under Acidic Conditions Is Characterized by Strain-Specific Patterns and the Upregulation of Motility, Cell Wall Modification Functions, and the PrfA Regulon. Frontiers in Microbiology. 9: 120. PMID 29467736 DOI: 10.3389/Fmicb.2018.00120 |
0.526 |
|
2017 |
Liu Y, Orsi RH, Boor KJ, Wiedmann M, Guariglia-Oropeza V. Home Alone: Elimination of All but One Alternative Sigma Factor in Listeria monocytogenes Allows Prediction of New Roles for σ(B). Frontiers in Microbiology. 8: 1910. PMID 29075236 DOI: 10.3389/Fmicb.2017.01910 |
0.54 |
|
2016 |
Orsi RH, Wiedmann M. Characteristics and distribution of Listeria spp., including Listeria species newly described since 2009. Applied Microbiology and Biotechnology. PMID 27129530 DOI: 10.1007/S00253-016-7552-2 |
0.556 |
|
2016 |
Liu Y, Orsi RH, Boor KJ, Wiedmann M, Guariglia-Oropeza V. An advanced bioinformatics approach for analyzing RNA-seq data reveals sigma H-dependent regulation of competence genes in Listeria monocytogenes. Bmc Genomics. 17: 115. PMID 26880300 DOI: 10.1186/S12864-016-2432-9 |
0.519 |
|
2015 |
Manuel CS, Van Stelten A, Wiedmann M, Nightingale KK, Orsi RH. Prevalence and distribution of Listeria monocytogenes inlA alleles prone to phase variation and inlA alleles with premature stop codon mutations among human, food, animal, and environmental isolates. Applied and Environmental Microbiology. 81: 8339-45. PMID 26407886 DOI: 10.1128/Aem.02752-15 |
0.722 |
|
2015 |
Tang S, Orsi RH, den Bakker HC, Wiedmann M, Boor KJ, Bergholz TM. Transcriptomic Analysis of the Adaptation of Listeria monocytogenes to Growth on Vacuum-Packed Cold Smoked Salmon. Applied and Environmental Microbiology. 81: 6812-24. PMID 26209664 DOI: 10.1128/Aem.01752-15 |
0.585 |
|
2015 |
Orsi RH, Bergholz TM, Wiedmann M, Boor KJ. The Listeria monocytogenes strain 10403S BioCyc database. Database : the Journal of Biological Databases and Curation. 2015. PMID 25819074 DOI: 10.1093/Database/Bav027 |
0.582 |
|
2014 |
Wang S, Orsi RH, Tang S, Zhang W, Wiedmann M, Boor KJ. Phosphotransferase system-dependent extracellular growth of listeria monocytogenes is regulated by alternative sigma factors σL and σH. Applied and Environmental Microbiology. 80: 7673-82. PMID 25281379 DOI: 10.1128/Aem.02530-14 |
0.55 |
|
2014 |
Ribeiro VB, Mujahid S, Orsi RH, Bergholz TM, Wiedmann M, Boor KJ, Destro MT. Contributions of σ(B) and PrfA to Listeria monocytogenes salt stress under food relevant conditions. International Journal of Food Microbiology. 177: 98-108. PMID 24631633 DOI: 10.1016/J.Ijfoodmicro.2014.02.018 |
0.58 |
|
2014 |
Guariglia-Oropeza V, Orsi RH, Yu H, Boor KJ, Wiedmann M, Guldimann C. Regulatory network features in Listeria monocytogenes-changing the way we talk. Frontiers in Cellular and Infection Microbiology. 4: 14. PMID 24592357 DOI: 10.3389/Fcimb.2014.00014 |
0.487 |
|
2014 |
Moreno Switt AI, Andrus AD, Ranieri ML, Orsi RH, Ivy R, den Bakker HC, Martin NH, Wiedmann M, Boor KJ. Genomic comparison of sporeforming bacilli isolated from milk. Bmc Genomics. 15: 26. PMID 24422886 DOI: 10.1186/1471-2164-15-26 |
0.78 |
|
2013 |
Oliver HF, Orsi RH, Wiedmann M, Boor KJ. σ(B) plays a limited role in the ability of Listeria monocytogenes strain F2365 to survive oxidative and acid stress and in its virulence characteristics. Journal of Food Protection. 76: 2079-86. PMID 24290686 DOI: 10.4315/0362-028X.Jfp-12-542 |
0.53 |
|
2013 |
Moreno Switt AI, Orsi RH, den Bakker HC, Vongkamjan K, Altier C, Wiedmann M. Genomic characterization provides new insight into Salmonella phage diversity. Bmc Genomics. 14: 481. PMID 23865498 DOI: 10.1186/1471-2164-14-481 |
0.809 |
|
2013 |
Mujahid S, Orsi RH, Boor KJ, Wiedmann M. Protein level identification of the Listeria monocytogenes sigma H, sigma L, and sigma C regulons. Bmc Microbiology. 13: 156. PMID 23841528 DOI: 10.1186/1471-2180-13-156 |
0.536 |
|
2013 |
Mujahid S, Orsi RH, Vangay P, Boor KJ, Wiedmann M. Refinement of the Listeria monocytogenes σB regulon through quantitative proteomic analysis. Microbiology (Reading, England). 159: 1109-19. PMID 23618998 DOI: 10.1099/Mic.0.066001-0 |
0.555 |
|
2011 |
Tsai YH, Maron SB, McGann P, Nightingale KK, Wiedmann M, Orsi RH. Recombination and positive selection contributed to the evolution of Listeria monocytogenes lineages III and IV, two distinct and well supported uncommon L. monocytogenes lineages. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1881-90. PMID 21854875 DOI: 10.1016/J.Meegid.2011.08.001 |
0.752 |
|
2011 |
Chaturongakul S, Raengpradub S, Palmer ME, Bergholz TM, Orsi RH, Hu Y, Ollinger J, Wiedmann M, Boor KJ. Transcriptomic and phenotypic analyses identify coregulated, overlapping regulons among PrfA, CtsR, HrcA, and the alternative sigma factors sigmaB, sigmaC, sigmaH, and sigmaL in Listeria monocytogenes. Applied and Environmental Microbiology. 77: 187-200. PMID 21037293 DOI: 10.1128/Aem.00952-10 |
0.728 |
|
2011 |
Orsi RH, den Bakker HC, Wiedmann M. Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics. International Journal of Medical Microbiology : Ijmm. 301: 79-96. PMID 20708964 DOI: 10.1016/J.Ijmm.2010.05.002 |
0.654 |
|
2011 |
Wiedmann M, Orsi RH, Furtado MR, Nightingale KK. Next-generation sequencing methods: Revolutionize food microbiology Food Technology. 65: 62-73. |
0.598 |
|
2010 |
den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M. Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. Bmc Genomics. 11: 688. PMID 21126366 DOI: 10.1186/1471-2164-11-688 |
0.662 |
|
2010 |
den Bakker HC, Bundrant BN, Fortes ED, Orsi RH, Wiedmann M. A population genetics-based and phylogenetic approach to understanding the evolution of virulence in the genus Listeria. Applied and Environmental Microbiology. 76: 6085-100. PMID 20656873 DOI: 10.1128/Aem.00447-10 |
0.641 |
|
2010 |
Stelling CR, Orsi RH, Wiedmann M. Complementation of Listeria monocytogenes null mutants with selected Listeria seeligeri virulence genes suggests functional adaptation of Hly and PrfA and considerable diversification of prfA regulation in L. seeligeri. Applied and Environmental Microbiology. 76: 5124-39. PMID 20543041 DOI: 10.1128/Aem.03107-09 |
0.588 |
|
2010 |
Oliver HF, Orsi RH, Wiedmann M, Boor KJ. Listeria monocytogenes {sigma}B has a small core regulon and a conserved role in virulence but makes differential contributions to stress tolerance across a diverse collection of strains. Applied and Environmental Microbiology. 76: 4216-32. PMID 20453120 DOI: 10.1128/Aem.00031-10 |
0.62 |
|
2010 |
Orsi RH, Bowen BM, Wiedmann M. Homopolymeric tracts represent a general regulatory mechanism in prokaryotes. Bmc Genomics. 11: 102. PMID 20144225 DOI: 10.1186/1471-2164-11-102 |
0.517 |
|
2010 |
Graves LM, Helsel LO, Steigerwalt AG, Morey RE, Daneshvar MI, Roof SE, Orsi RH, Fortes ED, Milillo SR, den Bakker HC, Wiedmann M, Swaminathan B, Sauders BD. Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest. International Journal of Systematic and Evolutionary Microbiology. 60: 1280-8. PMID 19667380 DOI: 10.1099/Ijs.0.014118-0 |
0.763 |
|
2009 |
Oliver HF, Orsi RH, Ponnala L, Keich U, Wang W, Sun Q, Cartinhour SW, Filiatrault MJ, Wiedmann M, Boor KJ. Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. Bmc Genomics. 10: 641. PMID 20042087 DOI: 10.1186/1471-2164-10-641 |
0.557 |
|
2009 |
Soyer Y, Orsi RH, Rodriguez-Rivera LD, Sun Q, Wiedmann M. Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes. Bmc Evolutionary Biology. 9: 264. PMID 19912661 DOI: 10.1186/1471-2148-9-264 |
0.788 |
|
2008 |
Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, Galagan JE, Birren BW, Ivy RA, Sun Q, Graves LM, Swaminathan B, Wiedmann M. Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. Bmc Genomics. 9: 539. PMID 19014550 DOI: 10.1186/1471-2164-9-539 |
0.812 |
|
2008 |
Orsi RH, Sun Q, Wiedmann M. Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. Bmc Evolutionary Biology. 8: 233. PMID 18700032 DOI: 10.1186/1471-2148-8-233 |
0.659 |
|
2008 |
Orsi RH, Maron SB, Nightingale KK, Jerome M, Tabor H, Wiedmann M. Lineage specific recombination and positive selection in coding and intragenic regions contributed to evolution of the main Listeria monocytogenes virulence gene cluster. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 566-76. PMID 18499533 DOI: 10.1016/J.Meegid.2008.04.006 |
0.76 |
|
2008 |
Orsi RH, Stoppe NC, Sato MIZ, Prado PI, Ottoboni LMM. Phylogenetic group distribution among Escherichia coli isolated from rivers in São Paulo State, Brazil World Journal of Microbiology and Biotechnology. 24: 1573-1577. DOI: 10.1007/S11274-007-9644-8 |
0.398 |
|
2007 |
Baumgart M, Dogan B, Rishniw M, Weitzman G, Bosworth B, Yantiss R, Orsi RH, Wiedmann M, McDonough P, Kim SG, Berg D, Schukken Y, Scherl E, Simpson KW. Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. The Isme Journal. 1: 403-18. PMID 18043660 DOI: 10.1038/Ismej.2007.52 |
0.515 |
|
2007 |
Hu Y, Oliver HF, Raengpradub S, Palmer ME, Orsi RH, Wiedmann M, Boor KJ. Transcriptomic and phenotypic analyses suggest a network between the transcriptional regulators HrcA and sigmaB in Listeria monocytogenes. Applied and Environmental Microbiology. 73: 7981-91. PMID 17965207 DOI: 10.1128/Aem.01281-07 |
0.74 |
|
2007 |
Hu Y, Raengpradub S, Schwab U, Loss C, Orsi RH, Wiedmann M, Boor KJ. Phenotypic and transcriptomic analyses demonstrate interactions between the transcriptional regulators CtsR and Sigma B in Listeria monocytogenes. Applied and Environmental Microbiology. 73: 7967-80. PMID 17933929 DOI: 10.1128/Aem.01085-07 |
0.733 |
|
2007 |
Orsi RH, Ripoll DR, Yeung M, Nightingale KK, Wiedmann M. Recombination and positive selection contribute to evolution of Listeria monocytogenes inlA. Microbiology (Reading, England). 153: 2666-78. PMID 17660431 DOI: 10.1099/Mic.0.2007/007310-0 |
0.724 |
|
2007 |
Orsi RH, Stoppe NC, Sato MI, Gomes TA, Prado PI, Manfio GP, Ottoboni LM. Genetic variability and pathogenicity potential of Escherichia coli isolated from recreational water reservoirs. Research in Microbiology. 158: 420-7. PMID 17467958 DOI: 10.1016/J.Resmic.2007.02.009 |
0.408 |
|
2006 |
Tsai YH, Orsi RH, Nightingale KK, Wiedmann M. Listeria monocytogenes internalins are highly diverse and evolved by recombination and positive selection. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 6: 378-89. PMID 16473049 DOI: 10.1016/J.Meegid.2006.01.004 |
0.773 |
|
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