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Paul Marjoram - Publications

Affiliations: 
Biostatistics University of Southern California, Los Angeles, CA, United States 
Area:
Genetics, Public Health
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ithnin M, Vu WT, Shin MG, Suryawanshi V, Sherbina K, Zolkafli SH, Serdari NM, Amiruddin MD, Abdullah N, Mustaffa S, Marjuni M, Nookiah R, Kushairi A, Marjoram P, Nuzhdin SV, et al. Genomic diversity and genome-wide association analysis related to yield and fatty acid composition of wild American oil palm. Plant Science : An International Journal of Experimental Plant Biology. 304: 110731. PMID 33568284 DOI: 10.1016/j.plantsci.2020.110731  0.549
2019 Zubair A, Rosen IG, Nuzhdin SV, Marjoram P. Bayesian model selection for the Drosophila gap gene network. Bmc Bioinformatics. 20: 327. PMID 31195954 DOI: 10.1186/S12859-019-2888-0  0.535
2019 Gentzbittel L, Ben C, Mazurier M, Shin MG, Lorenz T, Rickauer M, Marjoram P, Nuzhdin SV, Tatarinova TV. WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants. Genome Biology. 20: 106. PMID 31138283 DOI: 10.1186/S13059-019-1697-0  0.551
2019 Courcoubetis G, Ali S, Nuzhdin SV, Marjoram P, Haas S. Threshold response to stochasticity in morphogenesis. Plos One. 14: e0210088. PMID 30699125 DOI: 10.1371/Journal.Pone.0210088  0.548
2017 Signor SA, Abbasi M, Marjoram P, Nuzhdin SV. Conservation of social effects (Ψ) between two species of Drosophila despite reversal of sexual dimorphism. Ecology and Evolution. 7: 10031-10041. PMID 29238534 DOI: 10.1002/Ece3.3523  0.524
2017 Gursky VV, Kozlov KN, Kulakovskiy IV, Zubair A, Marjoram P, Lawrie DS, Nuzhdin SV, Samsonova MG. Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network. Plos One. 12: e0184657. PMID 28898266 DOI: 10.1371/Journal.Pone.0184657  0.593
2017 Foley BR, Marjoram P, Nuzhdin SV. Basic reversal-learning capacity in flies suggests rudiments of complex cognition. Plos One. 12: e0181749. PMID 28813432 DOI: 10.1371/Journal.Pone.0181749  0.504
2017 Signor SA, Abbasi M, Marjoram P, Nuzhdin SV. Social effects for locomotion vary between environments in Drosophila melanogaster females. Evolution; International Journal of Organic Evolution. PMID 28489252 DOI: 10.1111/Evo.13266  0.557
2016 Salomon MP, Li WL, Edlund CK, Morrison J, Fortini BK, Win AK, Conti DV, Thomas DC, Duggan D, Buchanan DD, Jenkins MA, Hopper JL, Gallinger S, Le Marchand L, Newcomb PA, ... ... Marjoram P, et al. GWASeq: targeted re-sequencing follow up to GWAS. Bmc Genomics. 17: 176. PMID 26940994 DOI: 10.1186/S12864-016-2459-Y  0.359
2015 Foley BR, Saltz JB, Nuzhdin SV, Marjoram P. A Bayesian Approach to Social Structure Uncovers Cryptic Regulation of Group Dynamics in Drosophila melanogaster. The American Naturalist. 185: 797-808. PMID 25996864 DOI: 10.1086/681084  0.517
2014 Marjoram P, Zubair A, Nuzhdin SV. Post-GWAS: where next? More samples, more SNPs or more biology? Heredity. 112: 79-88. PMID 23759726 DOI: 10.1038/Hdy.2013.52  0.608
2014 Marjoram P, Thomas DC. Next-Generation Sequencing Studies: Optimal Design and Analysis, Missing Heritability and Rare Variants Current Epidemiology Reports. 1: 213-219. DOI: 10.1007/S40471-014-0022-4  0.36
2013 Gao X, Gauderman WJ, Liu Y, Marjoram P, Torres M, Haritunians T, Kuo JZ, Chen YD, Allingham RR, Hauser MA, Taylor KD, Rotter JI, Varma R. A genome-wide association study of central corneal thickness in Latinos. Investigative Ophthalmology & Visual Science. 54: 2435-43. PMID 23493294 DOI: 10.1167/Iovs.13-11692  0.335
2012 Kang CJ, Marjoram P. A sample selection strategy for next-generation sequencing. Genetic Epidemiology. 36: 696-709. PMID 22865643 DOI: 10.1002/Gepi.21664  0.322
2012 Gao X, Haritunians T, Marjoram P, McKean-Cowdin R, Torres M, Taylor KD, Rotter JI, Gauderman WJ, Varma R. Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels. Frontiers in Genetics. 3: 117. PMID 22754564 DOI: 10.3389/Fgene.2012.00117  0.356
2012 Kang CJ, Marjoram P. Exact coalescent simulation of new haplotype data from existing reference haplotypes. Bioinformatics (Oxford, England). 28: 838-44. PMID 22257666 DOI: 10.1093/Bioinformatics/Bts033  0.315
2011 Jung H, Marjoram P. Choice of summary statistic weights in approximate Bayesian computation. Statistical Applications in Genetics and Molecular Biology. 10. PMID 23089822 DOI: 10.2202/1544-6115.1586  0.321
2011 Yang F, Kang CJ, Marjoram P. Methods for detecting associations between phenotype and aggregations of rare variants. Bmc Proceedings. 5: S51. PMID 22373540 DOI: 10.1186/1753-6561-5-S9-S51  0.386
2011 Kang CJ, Marjoram P. Inference of population mutation rate and detection of segregating sites from next-generation sequence data. Genetics. 189: 595-605. PMID 21840859 DOI: 10.1534/Genetics.111.130898  0.38
2011 Siegmund KD, Marjoram P, Tavaré S, Shibata D. High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers. Plos One. 6: e21657. PMID 21738754 DOI: 10.1371/Journal.Pone.0021657  0.346
2011 Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Molecular Biology and Evolution. 28: 2231-7. PMID 21368315 DOI: 10.1093/Molbev/Msr049  0.397
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Marjoram P, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.4
2009 Shtir C, Pique-Regi R, Siegmund K, Morrison J, Schumacher F, Marjoram P. Copy number variation in the Framingham Heart Study. Bmc Proceedings. 3: S133. PMID 20018000 DOI: 10.1186/1753-6561-3-S7-S133  0.712
2009 Shtir CJ, Marjoram P, Azen S, Conti DV, Le Marchand L, Haiman CA, Varma R. Variation in genetic admixture and population structure among Latinos: the Los Angeles Latino eye study (LALES). Bmc Genetics. 10: 71. PMID 19903357 DOI: 10.1186/1471-2156-10-71  0.716
2009 Chen GK, Marjoram P, Wall JD. Fast and flexible simulation of DNA sequence data. Genome Research. 19: 136-42. PMID 19029539 DOI: 10.1101/Gr.083634.108  0.302
2009 Jiang R, Tavaré S, Marjoram P. Population genetic inference from resequencing data. Genetics. 181: 187-97. PMID 18984575 DOI: 10.1534/Genetics.107.080630  0.36
2008 Joyce P, Marjoram P. Approximately sufficient statistics and bayesian computation. Statistical Applications in Genetics and Molecular Biology. 7: Article26. PMID 18764775 DOI: 10.2202/1544-6115.1389  0.3
2007 Zhao K, Nordborg M, Marjoram P. Genome-wide association mapping using mixed-models: application to GAW15 Problem 3. Bmc Proceedings. 1: S164. PMID 18466510 DOI: 10.1186/1753-6561-1-S1-S164  0.385
2007 Jung H, Zhao K, Marjoram P. Cladistic analysis of genotype data-application to GAW15 Problem 3. Bmc Proceedings. 1: S125. PMID 18466467 DOI: 10.1186/1753-6561-1-S1-S125  0.392
2007 Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M. An Arabidopsis example of association mapping in structured samples. Plos Genetics. 3: e4. PMID 17238287 DOI: 10.1371/Journal.Pgen.0030004  0.392
2006 Marjoram P, Tavaré S. Modern computational approaches for analysing molecular genetic variation data. Nature Reviews. Genetics. 7: 759-70. PMID 16983372 DOI: 10.1038/Nrg1961  0.333
2006 Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 174: 1517-28. PMID 16980396 DOI: 10.1534/Genetics.106.060723  0.322
2006 Jiang R, Marjoram P, Borevitz JO, Tavaré S. Inferring population parameters from single-feature polymorphism data. Genetics. 173: 2257-67. PMID 16702439 DOI: 10.1534/Genetics.105.047472  0.343
2006 Marjoram P, Wall JD. Fast "coalescent" simulation. Bmc Genetics. 7: 16. PMID 16539698 DOI: 10.1186/1471-2156-7-16  0.313
2006 Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. Association mapping with single-feature polymorphisms. Genetics. 173: 1125-33. PMID 16510789 DOI: 10.1534/Genetics.105.052720  0.316
2006 Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 172: 2441-8. PMID 16299388 DOI: 10.1534/Genetics.104.040311  0.359
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... Marjoram P, et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. Plos Genetics. 1: e60. PMID 16292355 DOI: 10.1371/Journal.Pgen.0010060  0.379
2005 Innan H, Zhang K, Marjoram P, Tavaré S, Rosenberg NA. Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics. 169: 1763-77. PMID 15654103 DOI: 10.1534/Genetics.104.032219  0.301
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... Marjoram P, et al. Genome-wide association mapping in Arabidopsis thaliana identifies previously known genes responsible for variation in flowering time and pathogen resistance Plos Genetics. DOI: 10.1371/Journal.Pgen.0010060.Eor  0.316
2004 Molitor J, Marjoram P, Conti D, Thomas D. A survey of current Bayesian gene mapping methods. Human Genomics. 1: 371-4. PMID 15588497 DOI: 10.1186/1479-7364-1-5-371  0.312
2004 Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470  0.387
2004 Padhukasahasram B, Marjoram P, Nordborg M. Estimating the rate of gene conversion on human chromosome 21. American Journal of Human Genetics. 75: 386-97. PMID 15250027 DOI: 10.1086/423451  0.341
2004 Brabender J, Marjoram P, Salonga D, Metzger R, Schneider PM, Park JM, Schneider S, Hölscher AH, Yin J, Meltzer SJ, Danenberg KD, Danenberg PV, Lord RV. A multigene expression panel for the molecular diagnosis of Barrett's esophagus and Barrett's adenocarcinoma of the esophagus. Oncogene. 23: 4780-8. PMID 15107828 DOI: 10.1038/Sj.Onc.1207663  0.305
2003 Marjoram P, Molitor J, Plagnol V, Tavare S. Markov chain Monte Carlo without likelihoods. Proceedings of the National Academy of Sciences of the United States of America. 100: 15324-8. PMID 14663152 DOI: 10.1073/Pnas.0306899100  0.303
2003 Thomas DC, Stram DO, Conti D, Molitor J, Marjoram P. Bayesian spatial modeling of haplotype associations. Human Heredity. 56: 32-40. PMID 14614236 DOI: 10.1159/000073730  0.361
2003 Molitor J, Marjoram P, Thomas D. Application of Bayesian spatial statistical methods to analysis of haplotypes effects and gene mapping. Genetic Epidemiology. 25: 95-105. PMID 12916018 DOI: 10.1002/Gepi.10251  0.355
1999 Leeflang EP, Tavaré S, Marjoram P, Neal CO, Srinidhi J, MacFarlane H, MacDonald ME, Gusella JF, de Young M, Wexler NS, Arnheim N. Analysis of germline mutation spectra at the Huntington's disease locus supports a mitotic mutation mechanism. Human Molecular Genetics. 8: 173-83. PMID 9931325 DOI: 10.1093/Hmg/8.2.173  0.315
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