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Aleksandra Walczak, PhD - Publications

Affiliations: 
CNRS, Paris, Île-de-France, France 
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96 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kreer C, Lupo C, Ercanoglu MS, Gieselmann L, Spisak N, Grossbach J, Schlotz M, Schommers P, Gruell H, Dold L, Beyer A, Nourmohammad A, Mora T, Walczak AM, Klein F. Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals. Nature Communications. 14: 7137. PMID 37932288 DOI: 10.1038/s41467-023-42906-y  0.491
2023 Chardès V, Mazzolini A, Mora T, Walczak AM. Evolutionary stability of antigenically escaping viruses. Proceedings of the National Academy of Sciences of the United States of America. 120: e2307712120. PMID 37871216 DOI: 10.1073/pnas.2307712120  0.51
2023 Hahn L, Walczak AM, Mora T. Dynamical Information Synergy in Biochemical Signaling Networks. Physical Review Letters. 131: 128401. PMID 37802943 DOI: 10.1103/PhysRevLett.131.128401  0.5
2023 Bravi B, Di Gioacchino A, Fernandez-de-Cossio-Diaz J, Walczak AM, Mora T, Cocco S, Monasson R. A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity. Elife. 12. PMID 37681658 DOI: 10.7554/eLife.85126  0.561
2023 Mora T, Walczak AM. Towards a quantitative theory of tolerance. Trends in Immunology. PMID 37263823 DOI: 10.1016/j.it.2023.04.008  0.553
2023 Urbanus J, Cosgrove J, Beltman JB, Elhanati Y, Moral RA, Conrad C, van Heijst JW, Tubeuf E, Velds A, Kok L, Merle C, Magnusson JP, Guyonnet L, Frisén J, Fre S, ... Walczak AM, et al. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications. 14: 2184. PMID 37069150 DOI: 10.1038/s41467-023-37167-8  0.492
2023 Mazzolini A, Mora T, Walczak AM. Inspecting the interaction between human immunodeficiency virus and the immune system through genetic turnover. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220056. PMID 37004725 DOI: 10.1098/rstb.2022.0056  0.548
2023 Ruiz Ortega M, Spisak N, Mora T, Walczak AM. Modeling and predicting the overlap of B- and T-cell receptor repertoires in healthy and SARS-CoV-2 infected individuals. Plos Genetics. 19: e1010652. PMID 36827454 DOI: 10.1371/journal.pgen.1010652  0.572
2023 Chen X, Ginoux F, Carbo-Tano M, Mora T, Walczak AM, Wyart C. Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. Elife. 12. PMID 36749019 DOI: 10.7554/eLife.81279  0.476
2023 Bensouda Koraichi M, Ferri S, Walczak AM, Mora T. Inferring the T cell repertoire dynamics of healthy individuals. Proceedings of the National Academy of Sciences of the United States of America. 120: e2207516120. PMID 36669107 DOI: 10.1073/pnas.2207516120  0.585
2023 Camaglia F, Ryvkin A, Greenstein E, Reich-Zeliger S, Chain B, Mora T, Walczak AM, Friedman N. Quantifying changes in the T cell receptor repertoire during thymic development. Elife. 12. PMID 36661220 DOI: 10.7554/eLife.81622  0.558
2022 Ferretti F, Grosse-Holz S, Holmes C, Shivers JL, Giardina I, Mora T, Walczak AM. Signatures of irreversibility in microscopic models of flocking. Physical Review. E. 106: 034608. PMID 36266796 DOI: 10.1103/PhysRevE.106.034608  0.505
2022 Koraichi MB, Touzel MP, Mazzolini A, Mora T, Walczak AM. NoisET: Noise Learning and Expansion Detection of T-Cell Receptors. The Journal of Physical Chemistry. A. PMID 36178325 DOI: 10.1021/acs.jpca.2c05002  0.552
2022 Greiff V, Luning Prak ET, O'Donnell T, Finotello F, Reddy ST, Walczak A, Mora T. What are the current driving questions in immune repertoire research? Cell Systems. 13: 683-686. PMID 36137509 DOI: 10.1016/j.cels.2022.08.006  0.485
2022 Krishnamurthy K, Hermundstad AM, Mora T, Walczak AM, Balasubramanian V. Disorder and the Neural Representation of Complex Odors. Frontiers in Computational Neuroscience. 16: 917786. PMID 36003684 DOI: 10.3389/fncom.2022.917786  0.625
2022 Galpern EA, Marchi J, Mora T, Walczak AM, Ferreiro DU. Evolution and folding of repeat proteins. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204131119. PMID 35905321 DOI: 10.1073/pnas.2204131119  0.528
2022 Isacchini G, Spisak N, Nourmohammad A, Mora T, Walczak AM. Mutual information maximization for amortized likelihood inference from sampled trajectories: MINIMALIST. Physical Review. E. 105: 055309. PMID 35706287 DOI: 10.1103/PhysRevE.105.055309  0.515
2022 Lupo C, Spisak N, Walczak AM, Mora T. Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. Plos Computational Biology. 18: e1010167. PMID 35653375 DOI: 10.1371/journal.pcbi.1010167  0.543
2022 Ferretti F, Chardès V, Mora T, Walczak AM, Giardina I. Renormalization group approach to connect discrete- and continuous-time descriptions of Gaussian processes. Physical Review. E. 105: 044133. PMID 35590618 DOI: 10.1103/PhysRevE.105.044133  0.497
2022 Łuksza M, Sethna ZM, Rojas LA, Lihm J, Bravi B, Elhanati Y, Soares K, Amisaki M, Dobrin A, Hoyos D, Guasp P, Zebboudj A, Yu R, Chandra AK, Waters T, ... ... Walczak AM, et al. Neoantigen quality predicts immunoediting in survivors of pancreatic cancer. Nature. PMID 35589842 DOI: 10.1038/s41586-022-04735-9  0.511
2022 Chardès V, Vergassola M, Walczak AM, Mora T. Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35177475 DOI: 10.1073/pnas.2113512119  0.55
2022 Shakiba N, Li C, Garcia-Ojalvo J, Cho KH, Patil K, Walczak A, Liu YY, Kuehn S, Nie Q, Klein A, Deco G, Kringelbach M, Iyer-Biswas S. How can Waddington-like landscapes facilitate insights beyond developmental biology? Cell Systems. 13: 4-9. PMID 35051373 DOI: 10.1016/j.cels.2021.12.003  0.726
2021 Heltberg ML, Miné-Hattab J, Taddei A, Walczak AM, Mora T. Physical observables to determine the nature of membrane-less cellular sub-compartments. Elife. 10. PMID 34677123 DOI: 10.7554/eLife.69181  0.488
2021 Phillips AM, Lawrence KR, Moulana A, Dupic T, Chang J, Johnson MS, Cvijovic I, Mora T, Walczak AM, Desai MM. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies. Elife. 10. PMID 34491198 DOI: 10.7554/eLife.71393  0.516
2021 Bravi B, Balachandran VP, Greenbaum BD, Walczak AM, Mora T, Monasson R, Cocco S. Probing T-cell response by sequence-based probabilistic modeling. Plos Computational Biology. 17: e1009297. PMID 34473697 DOI: 10.1371/journal.pcbi.1009297  0.572
2021 Marchi J, Lässig M, Walczak AM, Mora T. Antigenic waves of virus-immune coevolution. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34183397 DOI: 10.1073/pnas.2103398118  0.528
2021 Isacchini G, Walczak AM, Mora T, Nourmohammad A. Deep generative selection models of T and B cell receptor repertoires with soNNia. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33795515 DOI: 10.1073/pnas.2023141118  0.577
2021 Sachdeva V, Mora T, Walczak AM, Palmer SE. Optimal prediction with resource constraints using the information bottleneck. Plos Computational Biology. 17: e1008743. PMID 33684112 DOI: 10.1371/journal.pcbi.1008743  0.637
2021 Miné-Hattab J, Heltberg M, Villemeur M, Guedj C, Mora T, Walczak AM, Dahan M, Taddei A. Single molecule microscopy reveals key physical features of repair foci in living cells. Elife. 10. PMID 33543712 DOI: 10.7554/eLife.60577  0.478
2021 Gueguen P, Metoikidou C, Dupic T, Lawand M, Goudot C, Baulande S, Lameiras S, Lantz O, Girard N, Seguin-Givelet A, Lefevre M, Mora T, Walczak AM, Waterfall JJ, Amigorena S. Contribution of resident and circulating precursors to tumor-infiltrating CD8 T cell populations in lung cancer. Science Immunology. 6. PMID 33514641 DOI: 10.1126/sciimmunol.abd5778  0.509
2021 Murugan A, Husain K, Rust M, Bass JT, Hepler C, Pietsch JMJ, Swain PS, Toettcher JE, Jena S, Chakraborty AK, Sprenger KG, Mora T, Walczak A, Rivoire O, Wang S, et al. Roadmap on biology in time varying environments. Physical Biology. PMID 33477124 DOI: 10.1088/1478-3975/abde8d  0.493
2021 Minervina AA, Komech EA, Titov A, Bensouda Koraichi M, Rosati E, Mamedov IZ, Franke A, Efimov GA, Chudakov DM, Mora T, Walczak AM, Lebedev YB, Pogorelyy MV. Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection. Elife. 10. PMID 33399535 DOI: 10.7554/eLife.63502  0.552
2021 Dupic T, Bensouda Koraichi M, Minervina AA, Pogorelyy MV, Mora T, Walczak AM. Immune fingerprinting through repertoire similarity. Plos Genetics. 17: e1009301. PMID 33395405 DOI: 10.1371/journal.pgen.1009301  0.567
2020 Bravi B, Tubiana J, Cocco S, Monasson R, Mora T, Walczak AM. RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles. Cell Systems. PMID 33338400 DOI: 10.1016/j.cels.2020.11.005  0.496
2020 Sethna Z, Isacchini G, Dupic T, Mora T, Walczak AM, Elhanati Y. Population variability in the generation and selection of T-cell repertoires. Plos Computational Biology. 16: e1008394. PMID 33296360 DOI: 10.1371/journal.pcbi.1008394  0.55
2020 Spisak N, Walczak AM, Mora T. Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data. Nucleic Acids Research. PMID 33035336 DOI: 10.1093/nar/gkaa825  0.559
2020 Isacchini G, Olivares C, Nourmohammad A, Walczak AM, Mora T. SOS: online probability estimation and generation of T-and B-cell receptors. Bioinformatics (Oxford, England). PMID 32814974 DOI: 10.1093/Bioinformatics/Btaa574  0.564
2020 Isacchini G, Sethna Z, Elhanati Y, Nourmohammad A, Walczak AM, Mora T. Generative models of T-cell receptor sequences. Physical Review. E. 101: 062414. PMID 32688532 DOI: 10.1103/Physreve.101.062414  0.577
2020 Puelma Touzel M, Walczak AM, Mora T. Inferring the immune response from repertoire sequencing. Plos Computational Biology. 16: e1007873. PMID 32348312 DOI: 10.1371/Journal.Pcbi.1007873  0.583
2020 Minervina AA, Pogorelyy MV, Komech EA, Karnaukhov VK, Bacher P, Rosati E, Franke A, Chudakov D, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones. Elife. 9. PMID 32081129 DOI: 10.7554/Elife.53704  0.547
2020 Kreer C, Gruell H, Mora T, Walczak AM, Klein F. Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies. Vaccines. 8. PMID 31906351 DOI: 10.3390/Vaccines8010013  0.537
2020 Ferretti F, Chardès V, Mora T, Walczak AM, Giardina I. Building General Langevin Models from Discrete Datasets Physical Review X. 10. DOI: 10.1103/Physrevx.10.031018  0.523
2020 Altan-Bonnet G, Mora T, Walczak AM. Quantitative immunology for physicists Physics Reports. 849: 1-83. DOI: 10.1016/J.Physrep.2020.01.001  0.55
2019 Marchi J, Galpern EA, Espada R, Ferreiro DU, Walczak AM, Mora T. Size and structure of the sequence space of repeat proteins. Plos Computational Biology. 15: e1007282. PMID 31415557 DOI: 10.1371/Journal.Pcbi.1007282  0.512
2019 Marchi J, Lässig M, Mora T, Walczak AM. Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems. Pathogens (Basel, Switzerland). 8. PMID 31362404 DOI: 10.3390/Pathogens8030115  0.535
2019 Nourmohammad A, Otwinowski J, Łuksza M, Mora T, Walczak AM. Fierce selection and interference in B-cell repertoire response to chronic HIV-1. Molecular Biology and Evolution. PMID 31209469 DOI: 10.1093/Molbev/Msz143  0.554
2019 Pogorelyy MV, Minervina AA, Shugay M, Chudakov DM, Lebedev YB, Mora T, Walczak AM. Detecting T cell receptors involved in immune responses from single repertoire snapshots. Plos Biology. 17: e3000314. PMID 31194732 DOI: 10.1371/Journal.Pbio.3000314  0.577
2019 Mayer A, Balasubramanian V, Walczak AM, Mora T. How a well-adapting immune system remembers. Proceedings of the National Academy of Sciences of the United States of America. PMID 30988203 DOI: 10.1073/Pnas.1812810116  0.526
2019 Bradde S, Mora T, Walczak AM. Cost and benefits of clustered regularly interspaced short palindromic repeats spacer acquisition. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180095. PMID 30905281 DOI: 10.1098/Rstb.2018.0095  0.527
2019 Dupic T, Marcou Q, Walczak AM, Mora T. Genesis of the αβ T-cell receptor. Plos Computational Biology. 15: e1006874. PMID 30830899 DOI: 10.1371/Journal.Pcbi.1006874  0.516
2019 Sethna Z, Elhanati Y, Callan CG, Walczak AM, Mora T. OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinformatics (Oxford, England). PMID 30657870 DOI: 10.1093/Bioinformatics/Btz035  0.555
2019 Mora T, Walczak AM. How many different clonotypes do immune repertoires contain? Current Opinion in Systems Biology. 18: 104-110. DOI: 10.1016/J.Coisb.2019.10.001  0.573
2018 Adams RM, Kinney JB, Walczak AM, Mora T. Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy. Cell Systems. PMID 30611676 DOI: 10.1016/J.Cels.2018.12.004  0.52
2018 Rossi NA, Mora T, Walczak AM, Dunlop MJ. Active degradation of MarA controls coordination of its downstream targets. Plos Computational Biology. 14: e1006634. PMID 30589845 DOI: 10.1371/Journal.Pcbi.1006634  0.475
2018 Pogorelyy MV, Minervina AA, Touzel MP, Sycheva AL, Komech EA, Kovalenko EI, Karganova GG, Egorov ES, Komkov AY, Chudakov DM, Mamedov IZ, Mora T, Walczak AM, Lebedev YB. Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30459272 DOI: 10.1073/Pnas.1809642115  0.546
2018 Magadan S, Jouneau L, Puelma Touzel M, Marillet S, Chara W, Six A, Quillet E, Mora T, Walczak AM, Cazals F, Sunyer O, Fillatreau S, Boudinot P. Origin of Public Memory B Cell Clones in Fish After Antiviral Vaccination. Frontiers in Immunology. 9: 2115. PMID 30319606 DOI: 10.3389/Fimmu.2018.02115  0.521
2018 Toledano A, Elhanati Y, Benichou JIC, Walczak AM, Mora T, Louzoun Y. Evidence for Shaping of Light Chain Repertoire by Structural Selection. Frontiers in Immunology. 9: 1307. PMID 29988361 DOI: 10.3389/Fimmu.2018.01307  0.512
2018 Elhanati Y, Sethna Z, Callan CG, Mora T, Walczak AM. Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination. Immunological Reviews. 284: 167-179. PMID 29944757 DOI: 10.1111/Imr.12665  0.567
2018 Pogorelyy MV, Minervina AA, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Method for identification of condition-associated public antigen receptor sequences. Elife. 7. PMID 29533178 DOI: 10.7554/Elife.33050  0.538
2018 Marcou Q, Mora T, Walczak AM. High-throughput immune repertoire analysis with IGoR. Nature Communications. 9: 561. PMID 29422654 DOI: 10.1038/S41467-018-02832-W  0.582
2018 Marcou Q, Carmi-Levy I, Trichot C, Soumelis V, Mora T, Walczak A. A model for the integration of conflicting exogenous and endogenous signals by dendritic cells. Physical Biology. PMID 29360100 DOI: 10.1088/1478-3975/Aaaa0A  0.481
2018 Cavagna A, Giardina I, Mora T, Walczak AM. Physical constraints in biological collective behaviour Current Opinion in Systems Biology. 9: 49-54. DOI: 10.1016/J.Coisb.2018.03.002  0.5
2017 Mayer A, Mora T, Rivoire O, Walczak AM. Transitions in optimal adaptive strategies for populations in fluctuating environments. Physical Review. E. 96: 032412. PMID 29346942 DOI: 10.1103/Physreve.96.032412  0.528
2017 Mayer A, Rivoire O, Mora T, Walczak A. [Evolutionary explanation of the diversity of immune strategies]. Medecine Sciences : M/S. 33: 593-595. PMID 28990557 DOI: 10.1051/Medsci/20173306012  0.568
2017 Pogorelyy MV, Elhanati Y, Marcou Q, Sycheva AL, Komech EA, Nazarov VI, Britanova OV, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. Plos Computational Biology. 13: e1005572. PMID 28683116 DOI: 10.1371/Journal.Pcbi.1005572  0.554
2017 Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Inferring repeat-protein energetics from evolutionary information. Plos Computational Biology. 13: e1005584. PMID 28617812 DOI: 10.1371/Journal.Pcbi.1005584  0.532
2017 Fisher CK, Mora T, Walczak AM. Variable habitat conditions drive species covariation in the human microbiota. Plos Computational Biology. 13: e1005435. PMID 28448493 DOI: 10.1371/Journal.Pcbi.1005435  0.487
2017 Sethna Z, Elhanati Y, Dudgeon CS, Callan CG, Levine AJ, Mora T, Walczak AM. Insights into immune system development and function from mouse T-cell repertoires. Proceedings of the National Academy of Sciences of the United States of America. PMID 28196891 DOI: 10.1073/Pnas.1700241114  0.575
2017 Callan CG, Mora T, Walczak AM. Repertoire sequencing and the statistical ensemble approach to adaptive immunity Current Opinion in Systems Biology. 1: 44-47. DOI: 10.1016/J.Coisb.2016.12.014  0.569
2016 Adams RM, Mora T, Walczak AM, Kinney JB. Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. Elife. 5. PMID 28035901 DOI: 10.7554/Elife.23156  0.523
2016 Mora T, Walczak AM, Castello LD, Ginelli F, Melillo S, Parisi L, Viale M, Cavagna A, Giardina I. Local equilibrium in bird flocks. Nature Physics. 12: 1153-1157. PMID 27917230 DOI: 10.1038/Nphys3846  0.512
2016 Mayer A, Mora T, Rivoire O, Walczak AM. Diversity of immune strategies explained by adaptation to pathogen statistics. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432970 DOI: 10.1073/Pnas.1600663113  0.54
2016 Mora T, Walczak AM. Rényi entropy, abundance distribution, and the equivalence of ensembles. Physical Review. E. 93: 052418. PMID 27300934 DOI: 10.1103/Physreve.93.052418  0.484
2016 Elhanati Y, Marcou Q, Mora T, Walczak AM. repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinformatics (Oxford, England). PMID 27153709 DOI: 10.1093/Bioinformatics/Btw112  0.572
2016 Sokolowski TR, Walczak AM, Bialek W, Tkačik G. Extending the dynamic range of transcription factor action by translational regulation. Physical Review. E. 93: 022404. PMID 26986359 DOI: 10.1103/Physreve.93.022404  0.682
2015 Desponds J, Mora T, Walczak AM. Fluctuating fitness shapes the clone-size distribution of immune repertoires. Proceedings of the National Academy of Sciences of the United States of America. PMID 26711994 DOI: 10.1073/Pnas.1512977112  0.585
2015 Espada R, Parra RG, Sippl MJ, Mora T, Walczak AM, Ferreiro DU. Repeat proteins challenge the concept of structural domains. Biochemical Society Transactions. 43: 844-9. PMID 26517892 DOI: 10.1042/Bst20150083  0.478
2015 Bagnara D, Squillario M, Kipling D, Mora T, Walczak AM, Da Silva L, Weller S, Dunn-Walters DK, Weill JC, Reynaud CA. A Reassessment of IgM Memory Subsets in Humans. Journal of Immunology (Baltimore, Md. : 1950). 195: 3716-24. PMID 26355154 DOI: 10.4049/Jimmunol.1500753  0.522
2015 Elhanati Y, Sethna Z, Marcou Q, Callan CG, Mora T, Walczak AM. Inferring processes underlying B-cell repertoire diversity. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194757 DOI: 10.1098/Rstb.2014.0243  0.561
2015 Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Capturing coevolutionary signals inrepeat proteins. Bmc Bioinformatics. 16: 207. PMID 26134293 DOI: 10.1186/S12859-015-0648-3  0.522
2015 Mayer A, Balasubramanian V, Mora T, Walczak AM. How a well-adapted immune system is organized. Proceedings of the National Academy of Sciences of the United States of America. 112: 5950-5. PMID 25918407 DOI: 10.1073/Pnas.1421827112  0.556
2015 Cappuccio A, Zollinger R, Schenk M, Walczak A, Servant N, Barillot E, Hupé P, Modlin RL, Soumelis V. Combinatorial code governing cellular responses to complex stimuli. Nature Communications. 6: 6847. PMID 25896517 DOI: 10.1038/Ncomms7847  0.306
2014 Elhanati Y, Murugan A, Callan CG, Mora T, Walczak AM. Quantifying selection in immune receptor repertoires. Proceedings of the National Academy of Sciences of the United States of America. 111: 9875-80. PMID 24941953 DOI: 10.1073/Pnas.1409572111  0.584
2014 Cavagna A, Giardina I, Ginelli F, Mora T, Piovani D, Tavarone R, Walczak AM. Dynamical maximum entropy approach to flocking. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 042707. PMID 24827278 DOI: 10.1103/Physreve.89.042707  0.514
2014 Bialek W, Cavagna A, Giardina I, Mora T, Pohl O, Silvestri E, Viale M, Walczak AM. Social interactions dominate speed control in poising natural flocks near criticality. Proceedings of the National Academy of Sciences of the United States of America. 111: 7212-7. PMID 24785504 DOI: 10.1073/Pnas.1324045111  0.659
2014 Bagnara D, Squillario M, Kipling D, Mora T, Walczak A, Dunn-Walters DK, Weill J, Reynaud C. High-Throughput Ig Sequencing of Paired Blood and Spleen Samples Allows a Redefinition of Memory IgM Subsets in Humans Blood. 124: 565-565. DOI: 10.1182/Blood.V124.21.565.565  0.573
2014 Cavagna A, Del Castello L, Giardina I, Grigera T, Jelic A, Melillo S, Mora T, Parisi L, Silvestri E, Viale M, Walczak AM. Flocking and Turning: a New Model for Self-organized Collective Motion Journal of Statistical Physics. 158: 601-627. DOI: 10.1007/S10955-014-1119-3  0.484
2013 Six A, Mariotti-Ferrandiz ME, Chaara W, Magadan S, Pham HP, Lefranc MP, Mora T, Thomas-Vaslin V, Walczak AM, Boudinot P. The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis. Frontiers in Immunology. 4: 413. PMID 24348479 DOI: 10.3389/Fimmu.2013.00413  0.576
2013 Mora T, Walczak AM. Effect of phenotypic selection on stochastic gene expression. The Journal of Physical Chemistry. B. 117: 13194-205. PMID 23795617 DOI: 10.1021/Jp403231F  0.507
2012 Murugan A, Mora T, Walczak AM, Callan CG. Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proceedings of the National Academy of Sciences of the United States of America. 109: 16161-6. PMID 22988065 DOI: 10.1073/Pnas.1212755109  0.586
2012 Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 041903. PMID 22680494 DOI: 10.1103/Physreve.85.041903  0.683
2012 Mora T, Walczak AM, Zamponi F. Transition path sampling algorithm for discrete many-body systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 036710. PMID 22587212 DOI: 10.1103/Physreve.85.036710  0.481
2012 Bialek W, Cavagna A, Giardina I, Mora T, Silvestri E, Viale M, Walczak AM. Statistical mechanics for natural flocks of birds. Proceedings of the National Academy of Sciences of the United States of America. 109: 4786-91. PMID 22427355 DOI: 10.1073/Pnas.1118633109  0.659
2010 Walczak AM, Tkacik G, Bialek W. Optimizing information flow in small genetic networks. II. Feed-forward interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 041905. PMID 20481751 DOI: 10.1103/Physreve.81.041905  0.695
2010 Mora T, Walczak AM, Bialek W, Callan CG. Maximum entropy models for antibody diversity. Proceedings of the National Academy of Sciences of the United States of America. 107: 5405-10. PMID 20212159 DOI: 10.1073/Pnas.1001705107  0.686
2009 Tkacik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 031920. PMID 19905159 DOI: 10.1103/Physreve.80.031920  0.702
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