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Michael E. Smoot, Ph.D. - Publications

Affiliations: 
2005 University of Virginia, Charlottesville, VA 
Area:
System Science Engineering, Biochemistry
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Demchak B, Hull T, Reich M, Liefeld T, Smoot M, Ideker T, Mesirov JP. Cytoscape: the network visualization tool for GenomeSpace workflows. F1000research. 3: 151. PMID 25165537 DOI: 10.12688/F1000Research.4492.2  0.422
2012 Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. A travel guide to Cytoscape plugins. Nature Methods. 9: 1069-76. PMID 23132118 DOI: 10.1038/Nmeth.2212  0.358
2011 Srivas R, Hannum G, Ruscheinski J, Ono K, Wang PL, Smoot M, Ideker T. Assembling global maps of cellular function through integrative analysis of physical and genetic networks. Nature Protocols. 6: 1308-23. PMID 21886098 DOI: 10.1038/Nprot.2011.368  0.359
2011 Smoot M, Ono K, Ideker T, Maere S. PiNGO: a Cytoscape plugin to find candidate genes in biological networks. Bioinformatics (Oxford, England). 27: 1030-1. PMID 21278188 DOI: 10.1093/Bioinformatics/Btr045  0.304
2011 Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (Oxford, England). 27: 431-2. PMID 21149340 DOI: 10.1093/Bioinformatics/Btq675  0.363
2010 Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T. A human MAP kinase interactome. Nature Methods. 7: 801-5. PMID 20936779 DOI: 10.1038/Nmeth.1506  0.324
2010 Sierk ML, Smoot ME, Bass EJ, Pearson WR. Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments. Bmc Bioinformatics. 11: 146. PMID 20307279 DOI: 10.1186/1471-2105-11-146  0.485
2009 Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L. Fast statistical alignment. Plos Computational Biology. 5: e1000392. PMID 19478997 DOI: 10.1371/Journal.Pcbi.1000392  0.397
2008 Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Exploring biological networks with Cytoscape software. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.13. PMID 18819078 DOI: 10.1002/0471250953.Bi0813S23  0.359
2008 Kalaev M, Smoot M, Ideker T, Sharan R. NetworkBLAST: comparative analysis of protein networks. Bioinformatics (Oxford, England). 24: 594-6. PMID 18174180 DOI: 10.1093/Bioinformatics/Btm630  0.32
2007 Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324  0.352
2005 Smoot ME, Bass EJ, Guerlain SA, Pearson WR. A System for Visualizing and Analyzing Near-Optimal Protein Sequence Alignments Information Visualization. 4: 224-237. DOI: 10.1057/Palgrave.Ivs.9500100  0.558
2004 Smoot ME, Guerlain SA, Pearson WR. Visualization of near-optimal sequence alignments. Bioinformatics (Oxford, England). 20: 953-8. PMID 14751975 DOI: 10.1093/Bioinformatics/Bth013  0.543
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