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Thomas C. Wiegers - Publications

Affiliations: 
Bioinformatics The Mount Desert Island Biological Laboratory, USA 
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Davis AP, Wiegers TC, Wiegers J, Wyatt B, Johnson RJ, Sciaky D, Barkalow F, Strong M, Planchart A, Mattingly CJ. CTD Tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 37486259 DOI: 10.1093/toxsci/kfad069  0.485
2022 Davis AP, Wiegers TC, Johnson RJ, Sciaky D, Wiegers J, Mattingly CJ. Comparative Toxicogenomics Database (CTD): update 2023. Nucleic Acids Research. PMID 36169237 DOI: 10.1093/nar/gkac833  0.521
2021 Grondin CJ, Davis AP, Wiegers JA, Wiegers TC, Sciaky D, Johnson RJ, Mattingly CJ. Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database. Current Research in Toxicology. 2: 272-281. PMID 34458863 DOI: 10.1016/j.crtox.2021.08.001  0.404
2021 Davis AP, Wiegers TC, Wiegers J, Grondin CJ, Johnson RJ, Sciaky D, Mattingly CJ. CTD Anatomy: analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies. Current Research in Toxicology. 2: 128-139. PMID 33768211 DOI: 10.1016/j.crtox.2021.03.001  0.428
2020 Davis AP, Grondin CJ, Johnson RJ, Sciaky D, Wiegers J, Wiegers TC, Mattingly CJ. Comparative Toxicogenomics Database (CTD): update 2021. Nucleic Acids Research. PMID 33068428 DOI: 10.1093/nar/gkaa891  0.532
2020 Davis AP, Wiegers TC, Grondin CJ, Johnson RJ, Sciaky D, Wiegers J, Mattingly CJ. Leveraging the Comparative Toxicogenomics Database to fill in knowledge gaps for environmental health: a test case for air pollution-induced cardiovascular disease. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 32663284 DOI: 10.1093/Toxsci/Kfaa113  0.519
2019 Davis AP, Wiegers J, Wiegers TC, Mattingly CJ. Public data sources to support systems toxicology applications Current Opinion in Toxicology. 16: 17-24. PMID 33604492 DOI: 10.1016/J.Cotox.2019.03.002  0.494
2018 Davis AP, Grondin CJ, Johnson RJ, Sciaky D, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2019. Nucleic Acids Research. PMID 30247620 DOI: 10.1093/nar/gky868  0.53
2018 Davis AP, Wiegers TC, Wiegers J, Johnson RJ, Sciaky D, Grondin CJ, Mattingly CJ. Chemical-induced phenotypes at CTD help inform the pre-disease state and construct adverse outcome pathways. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 29846728 DOI: 10.1093/Toxsci/Kfy131  0.534
2018 Grondin CJ, Davis AP, Wiegers TC, Wiegers JA, Mattingly CJ. Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database. Environmental Health Perspectives. 126: 014501. PMID 29351546 DOI: 10.1289/Ehp2873  0.569
2017 Grondin CJ, Davis AP, Wiegers JA, Wiegers TC, King BL, Mattingly CJ. Exposure science in the comparative toxicogenomics database: Linking chemical stressors to outcomes via an exposure ontology F1000research. 6. DOI: 10.7490/F1000Research.1113883.1  0.348
2017 Davis AP, Johnson RJ, Sciaky D, Grondin CJ, Wiegers J, Wiegers TC, Mattingly CJ. Chemical-phenotype curation at CTD F1000research. 6. DOI: 10.7490/F1000Research.1113859.1  0.345
2016 Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Research. PMID 27651457 DOI: 10.1093/Nar/Gkw838  0.593
2016 Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ. Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database. Plos One. 11: e0155530. PMID 27171405 DOI: 10.1371/Journal.Pone.0155530  0.545
2016 Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environmental Health Perspectives. PMID 27170236 DOI: 10.1289/Ehp174  0.43
2016 Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z. BioCreative V CDR task corpus: a resource for chemical disease relation extraction. Database : the Journal of Biological Databases and Curation. 2016. PMID 27161011 DOI: 10.1093/Database/Baw068  0.502
2016 Pelletier D, Wiegers TC, Enayetallah A, Kibbey C, Gosink M, Koza-Taylor P, Mattingly CJ, Lawton M. ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings. Database : the Journal of Biological Databases and Curation. 2016. PMID 27161010 DOI: 10.1093/Database/Baw062  0.428
2016 Wei CH, Peng Y, Leaman R, Davis AP, Mattingly CJ, Li J, Wiegers TC, Lu Z. Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. Database : the Journal of Biological Databases and Curation. 2016. PMID 26994911 DOI: 10.1093/Database/Baw032  0.405
2015 Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. Nucleic Acids Research. 43: D914-20. PMID 25326323 DOI: 10.1093/Nar/Gku935  0.542
2014 Comeau DC, Batista-Navarro RT, Dai HJ, DoÄŸan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, ... Wiegers TC, et al. BioC interoperability track overview. Database : the Journal of Biological Databases and Curation. 2014. PMID 24980129 DOI: 10.1093/Database/Bau053  0.353
2014 Wiegers TC, Davis AP, Mattingly CJ. Web services-based text-mining demonstrates broad impacts for interoperability and process simplification. Database : the Journal of Biological Databases and Curation. 2014. PMID 24919658 DOI: 10.1093/Database/Bau050  0.445
2014 Arighi CN, Wu CH, Cohen KB, Hirschman L, Krallinger M, Valencia A, Lu Z, Wilbur JW, Wiegers TC. BioCreative-IV virtual issue. Database : the Journal of Biological Databases and Curation. 2014. PMID 24852177 DOI: 10.1093/Database/Bau039  0.39
2013 Davis AP, Wiegers TC, Roberts PM, King BL, Lay JM, Lennon-Hopkins K, Sciaky D, Johnson R, Keating H, Greene N, Hernandez R, McConnell KJ, Enayetallah AE, Mattingly CJ. A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions. Database : the Journal of Biological Databases and Curation. 2013: bat080. PMID 24288140 DOI: 10.1093/Database/Bat080  0.536
2013 Comeau DC, Islamaj Do?an R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. BioC: a minimalist approach to interoperability for biomedical text processing. Database : the Journal of Biological Databases and Curation. 2013: bat064. PMID 24048470 DOI: 10.1093/Database/Bat064  0.416
2013 Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ. Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database. Plos One. 8: e58201. PMID 23613709 DOI: 10.1371/Journal.Pone.0058201  0.571
2013 Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Research. 41: D1104-14. PMID 23093600 DOI: 10.1093/Nar/Gky868  0.58
2012 Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, Wiegers TC, Mattingly CJ. Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database. Database : the Journal of Biological Databases and Curation. 2012: bas051. PMID 23221299 DOI: 10.1093/Database/Bas051  0.528
2012 Wu CH, Arighi CN, Cohen KB, Hirschman L, Krallinger M, Lu Z, Mattingly C, Valencia A, Wiegers TC, John Wilbur W. BioCreative-2012 virtual issue. Database : the Journal of Biological Databases and Curation. 2012: bas049. PMID 23221175 DOI: 10.1093/Database/Bas049  0.433
2012 Wiegers TC, Davis AP, Mattingly CJ. Collaborative biocuration--text-mining development task for document prioritization for curation. Database : the Journal of Biological Databases and Curation. 2012: bas037. PMID 23180769 DOI: 10.1093/Database/Bas037  0.47
2012 King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. Plos One. 7: e46524. PMID 23144783 DOI: 10.1371/Journal.Pone.0046524  0.511
2012 Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, Valencia A, Wu CH, Chatr-Aryamontri A, Dowell KG, Huala E, Lourenço A, Nash R, Veuthey AL, Wiegers T, Winter AG. Text mining for the biocuration workflow. Database : the Journal of Biological Databases and Curation. 2012: bas020. PMID 22513129 DOI: 10.1093/Database/Bas020  0.476
2012 Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ. MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. Database : the Journal of Biological Databases and Curation. 2012: bar065. PMID 22434833 DOI: 10.1093/Database/Bar065  0.467
2012 Bello SM, Richardson JE, Davis AP, Wiegers TC, Mattingly CJ, Dolan ME, Smith CL, Blake JA, Eppig JT. Disease model curation improvements at Mouse Genome Informatics. Database : the Journal of Biological Databases and Curation. 2012: bar063. PMID 22434831 DOI: 10.1093/Database/Bar063  0.456
2011 Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD. Bioinformation. 7: 154-6. PMID 22125387 DOI: 10.6026/97320630007154  0.535
2011 Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ. The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database. Database : the Journal of Biological Databases and Curation. 2011: bar034. PMID 21933848 DOI: 10.1093/Database/Bar034  0.567
2011 Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ. The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Research. 39: D1067-72. PMID 20864448 DOI: 10.1093/Nar/Gkq813  0.573
2009 Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Hampton TH, Mattingly CJ. GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles. Bioinformation. 4: 173-4. PMID 20198196 DOI: 10.6026/97320630004173  0.512
2009 Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ. Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD). Bmc Bioinformatics. 10: 326. PMID 19814812 DOI: 10.1186/1471-2105-10-326  0.586
2009 Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ. Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. Nucleic Acids Research. 37: D786-92. PMID 18782832 DOI: 10.1093/Nar/Gkn580  0.571
2008 Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study. Bmc Medical Genomics. 1: 48. PMID 18845002 DOI: 10.1186/1755-8794-1-48  0.565
2002 Blake JA, Richardson JE, Bult CJ, Kadin JA, Eppig JT, Baldarelli RM, Baya M, Beal JS, Boddy WJ, Bradt DW, Burkart DJ, Bulter NE, Campbell J, Chu T, Corbani LE, ... ... Wiegers TC, et al. The Mouse Genome Database (MGD): The model organism database for the laboratory mouse Nucleic Acids Research. 30: 113-115. PMID 11752269 DOI: 10.1093/nar/30.1.113  0.343
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