| Year |
Citation |
Score |
| 2020 |
Verschaffelt P, Van Thienen P, Van Den Bossche T, Van der Jeugt F, De Tender C, Martens L, Dawyndt P, Mesuere B. Unipept CLI 2.0: adding support for visualisations and functional annotations. Bioinformatics (Oxford, England). PMID 32492134 DOI: 10.1093/Bioinformatics/Btaa553 |
0.338 |
|
| 2020 |
Van Den Bossche T, Verschaffelt P, Schallert K, Barsnes H, Dawyndt P, Benndorf D, Renard BY, Mesuere B, Martens L, Muth T. Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis. Journal of Proteome Research. PMID 32431147 DOI: 10.1021/Acs.Jproteome.0C00136 |
0.302 |
|
| 2018 |
Gurdeep Singh R, Tanca A, Palomba A, Van der Jeugt F, Verschaffelt P, Uzzau S, Martens L, Dawyndt P, Mesuere B. Unipept 4.0: functional analysis of metaproteome data. Journal of Proteome Research. PMID 30465426 DOI: 10.1021/Acs.Jproteome.8B00716 |
0.309 |
|
| 2018 |
Martens S, Landuyt A, Espeel P, Devreese B, Dawyndt P, Prez FD. Multifunctional sequence-defined macromolecules for chemical data storage Nature Communications. 9: 4451. PMID 30367037 DOI: 10.1038/S41467-018-06926-3 |
0.353 |
|
| 2017 |
Mesuere B, Van der Jeugt F, Willems T, Naessens T, Devreese B, Martens L, Dawyndt P. High-throughput metaproteomics data analysis with Unipept: A tutorial. Journal of Proteomics. PMID 28552653 DOI: 10.1016/J.Jprot.2017.05.022 |
0.314 |
|
| 2014 |
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920 |
0.391 |
|
| 2014 |
Verslyppe B, De Smet W, De Baets B, De Vos P, Dawyndt P. StrainInfo introduces electronic passports for microorganisms. Systematic and Applied Microbiology. 37: 42-50. PMID 24321274 DOI: 10.1016/J.Syapm.2013.11.002 |
0.354 |
|
| 2013 |
De Smet W, De Loof K, De Vos P, Dawyndt P, De Baets B. Filtering and ranking techniques for automated selection of high-quality 16S rRNA gene sequences. Systematic and Applied Microbiology. 36: 549-59. PMID 24161830 DOI: 10.1016/J.Syapm.2013.09.001 |
0.357 |
|
| 2013 |
Devisscher M, Meyer TD, Criekinge WV, Dawyndt P. An ontology based query engine for querying biological sequences Embnet.Journal. 19: 51-55. DOI: 10.14806/Ej.19.B.729 |
0.359 |
|
| 2012 |
Mesuere B, Devreese B, Debyser G, Aerts M, Vandamme P, Dawyndt P. Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples. Journal of Proteome Research. 11: 5773-80. PMID 23153116 DOI: 10.1021/Pr300576S |
0.302 |
|
| 2012 |
Vyverman M, De Baets B, Fack V, Dawyndt P. Prospects and limitations of full-text index structures in genome analysis. Nucleic Acids Research. 40: 6993-7015. PMID 22584621 DOI: 10.1093/Nar/Gks408 |
0.326 |
|
| 2011 |
Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, et al. The Genomic Standards Consortium. Plos Biology. 9: e1001088. PMID 21713030 DOI: 10.1371/Journal.Pbio.1001088 |
0.354 |
|
| 2011 |
Morrison N, Hancock D, Hirschman L, Dawyndt P, Verslyppe B, Kyrpides N, Kottmann R, Yilmaz P, Glöckner FO, Grethe J, Booth T, Sterk P, Nenadic G, Field D. Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. Standards in Genomic Sciences. 4: 286-92. PMID 21677865 DOI: 10.4056/Sigs.1344279 |
0.339 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Dawyndt P, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.375 |
|
| 2011 |
Verslyppe B, De Smet W, De Baets B, De Vos P, Dawyndt P. Make Histri: reconstructing the exchange history of bacterial and archaeal type strains. Systematic and Applied Microbiology. 34: 328-36. PMID 21514082 DOI: 10.1016/J.Syapm.2011.01.004 |
0.321 |
|
| 2011 |
Vandamme P, Dawyndt P. Classification and identification of the Burkholderia cepacia complex: Past, present and future. Systematic and Applied Microbiology. 34: 87-95. PMID 21257278 DOI: 10.1016/J.Syapm.2010.10.002 |
0.388 |
|
| 2010 |
Verslyppe B, Kottmann R, De Smet W, De Baets B, De Vos P, Dawyndt P. Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons. Research in Microbiology. 161: 439-45. PMID 20211251 DOI: 10.1016/J.Resmic.2010.02.005 |
0.307 |
|
| 2010 |
Slabbinck B, Waegeman W, Dawyndt P, De Vos P, De Baets B. From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification. Bmc Bioinformatics. 11: 69. PMID 20113515 DOI: 10.1186/1471-2105-11-69 |
0.344 |
|
| 2010 |
Verslyppe B, Smet WD, Vos PD, Baets BD, Dawyndt P. Semantic integration of isolation habitat and location in StrainInfo Bmc Bioinformatics. 11: 3. DOI: 10.1186/1471-2105-11-S5-P3 |
0.364 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Dawyndt P, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.346 |
|
| 2009 |
Slabbinck B, De Baets B, Dawyndt P, De Vos P. Towards large-scale FAME-based bacterial species identification using machine learning techniques. Systematic and Applied Microbiology. 32: 163-76. PMID 19237256 DOI: 10.1016/J.Syapm.2009.01.003 |
0.327 |
|
| 2008 |
Vanlaere E, Sergeant K, Dawyndt P, Kallow W, Erhard M, Sutton H, Dare D, Devreese B, Samyn B, Vandamme P. Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex. Journal of Microbiological Methods. 75: 279-86. PMID 18627778 DOI: 10.1016/J.Mimet.2008.06.016 |
0.329 |
|
| 2008 |
Field D, Glöckner FO, Garrity GM, Gray T, Sterk P, Cochrane G, Vaughan R, Kolker E, Kottmann R, Kyrpides N, Angiuoli S, Dawyndt P, Guralnick R, Goldstein P, Hall N, et al. Meeting report: the fourth Genomic Standards Consortium (GSC) workshop. Omics : a Journal of Integrative Biology. 12: 101-8. PMID 18564914 DOI: 10.1089/Omi.2008.0014 |
0.354 |
|
| 2008 |
Van Brabant B, Gray T, Verslyppe B, Kyrpides N, Dietrich K, Glöckner FO, Cole J, Farris R, Schriml LM, De Vos P, De Baets B, Field D, Dawyndt P. Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. Omics : a Journal of Integrative Biology. 12: 123-7. PMID 18479205 DOI: 10.1089/Omi.2008.0020 |
0.372 |
|
| 2008 |
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, ... ... Dawyndt P, et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology. 26: 541-7. PMID 18464787 DOI: 10.1038/Nbt1360 |
0.343 |
|
| 2008 |
Slabbinck B, De Baets B, Dawyndt P, De Vos P. Genus-wide Bacillus species identification through proper artificial neural network experiments on fatty acid profiles. Antonie Van Leeuwenhoek. 94: 187-98. PMID 18322819 DOI: 10.1007/S10482-008-9229-Z |
0.346 |
|
| 2008 |
Slabbinck B, Dawyndt P, Martens M, De Vos P, De Baets B. TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers. Bioinformatics (Oxford, England). 24: 866-7. PMID 18227116 DOI: 10.1093/Bioinformatics/Btn031 |
0.324 |
|
| 2008 |
Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A. Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). International Journal of Systematic and Evolutionary Microbiology. 58: 200-14. PMID 18175710 DOI: 10.1099/Ijs.0.65392-0 |
0.357 |
|
| 2007 |
Naser SM, Dawyndt P, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Vancanneyt M, Swings J. Identification of lactobacilli by pheS and rpoA gene sequence analyses. International Journal of Systematic and Evolutionary Microbiology. 57: 2777-89. PMID 18048724 DOI: 10.1099/Ijs.0.64711-0 |
0.359 |
|
| 2006 |
Gevers D, Dawyndt P, Vandamme P, Willems A, Vancanneyt M, Swings J, De Vos P. Stepping stones towards a new prokaryotic taxonomy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1911-6. PMID 17062410 DOI: 10.1098/Rstb.2006.1915 |
0.378 |
|
| 2006 |
Hutsebaut D, Vandroemme J, Heyrman J, Dawyndt P, Vandenabeele P, Moens L, de Vos P. Raman microspectroscopy as an identification tool within the phylogenetically homogeneous 'Bacillus subtilis' group. Systematic and Applied Microbiology. 29: 650-60. PMID 16564151 DOI: 10.1016/J.Syapm.2006.02.001 |
0.366 |
|
| 2006 |
Vancanneyt M, Nedashkovskaya OI, Snauwaert C, Mortier S, Vandemeulebroecke K, Hoste B, Dawyndt P, Frolova GM, Janssens D, Swings J. Larkinella insperata gen. nov., sp. nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator. International Journal of Systematic and Evolutionary Microbiology. 56: 237-41. PMID 16403892 DOI: 10.1099/Ijs.0.63948-0 |
0.331 |
|
| 2005 |
Romano P, Dawyndt P, Piersigilli F, Swings J. Improving interoperability between microbial information and sequence databases. Bmc Bioinformatics. 6: S23. PMID 16351750 DOI: 10.1186/1471-2105-6-S4-S23 |
0.373 |
|
| 2005 |
Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S, Hoste B, Munn CB, Swings J. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Applied and Environmental Microbiology. 71: 5107-15. PMID 16151093 DOI: 10.1128/Aem.71.9.5107-5115.2005 |
0.374 |
|
| 2005 |
Devriese LA, Vancanneyt M, Baele M, Vaneechoutte M, De Graef E, Snauwaert C, Cleenwerck I, Dawyndt P, Swings J, Decostere A, Haesebrouck F. Staphylococcus pseudintermedius sp. nov., a coagulase-positive species from animals. International Journal of Systematic and Evolutionary Microbiology. 55: 1569-73. PMID 16014483 DOI: 10.1099/Ijs.0.63413-0 |
0.338 |
|
| 2005 |
Naser SM, Thompson FL, Hoste B, Gevers D, Dawyndt P, Vancanneyt M, Swings J. Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology (Reading, England). 151: 2141-50. PMID 16000705 DOI: 10.1099/Mic.0.27840-0 |
0.372 |
|
| 2005 |
Lanoot B, Vancanneyt M, Hoste B, Vandemeulebroecke K, Cnockaert MC, Dawyndt P, Liu Z, Huang Y, Swings J. Grouping of streptomycetes using 16S-ITS RFLP fingerprinting. Research in Microbiology. 156: 755-62. PMID 15950131 DOI: 10.1016/J.Resmic.2005.01.017 |
0.348 |
|
| 2005 |
Nedashkovskaya OI, Vancanneyt M, Dawyndt P, Engelbeen K, Vandemeulebroecke K, Cleenwerck I, Hoste B, Mergaert J, Tan TL, Frolova GM, Mikhailov VV, Swings J. Reclassification of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov. International Journal of Systematic and Evolutionary Microbiology. 55: 1033-8. PMID 15879230 DOI: 10.1099/Ijs.0.63410-0 |
0.35 |
|
| 2005 |
Dawyndt P, Thompson FL, Austin B, Swings J, Koski T, Gyllenberg M. Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae. International Journal of Systematic and Evolutionary Microbiology. 55: 57-66. PMID 15653853 DOI: 10.1099/Ijs.0.63136-0 |
0.323 |
|
| 2005 |
Dawyndt P, Vancanneyt M, Meyer HD, Swings J. Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources Ieee Transactions On Knowledge and Data Engineering. 17: 1111-1126. DOI: 10.1109/Tkde.2005.131 |
0.348 |
|
| 2004 |
Austin B, Dawyndt P, Gyllenberg M, Koski T, Lund T, Swings J, Thompson FL. Sliding window discretization: a new method for multiple band matching of bacterial genotyping fingerprints. Bulletin of Mathematical Biology. 66: 1575-96. PMID 15522346 DOI: 10.1016/J.Bulm.2004.02.004 |
0.304 |
|
| 2004 |
Thompson CC, Thompson FL, Vandemeulebroecke K, Hoste B, Dawyndt P, Swings J. Use of recA as an alternative phylogenetic marker in the family Vibrionaceae. International Journal of Systematic and Evolutionary Microbiology. 54: 919-24. PMID 15143042 DOI: 10.1099/Ijs.0.02963-0 |
0.363 |
|
| 2002 |
Van Trappen S, Mergaert J, Van Eygen S, Dawyndt P, Cnockaert MC, Swings J. Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes. Systematic and Applied Microbiology. 25: 603-10. PMID 12583721 DOI: 10.1078/07232020260517742 |
0.337 |
|
| 2002 |
Gyllenberg M, Koski T, Dawyndt P, Lund T, Thompson F, Austin B, Swings J. New methods for the analysis of binarized BIOLOG GN data of Vibrio species: minimization of stochastic complexity and cumulative classification. Systematic and Applied Microbiology. 25: 403-15. PMID 12421078 DOI: 10.1078/0723-2020-00109 |
0.345 |
|
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