| Year |
Citation |
Score |
| 2022 |
Winchester EW, Hardy A, Cotney J. Integration of multimodal data in the developing tooth reveals candidate regulatory loci driving human odontogenic phenotypes. Frontiers in Dental Medicine. 3. PMID 37034481 DOI: 10.3389/fdmed.2022.1009264 |
0.323 |
|
| 2020 |
Pini J, Kueper J, Hu YD, Kawasaki K, Yeung P, Tsimbal C, Yoon B, Carmichael N, Maas RL, Cotney J, Grinblat Y, Liao EC. ALX1-related frontonasal dysplasia results from defective neural crest cell development and migration. Embo Molecular Medicine. e12013. PMID 32914578 DOI: 10.15252/Emmm.202012013 |
0.339 |
|
| 2020 |
Sharma T, Cotney J, Singh V, Sanjay A, Reichenberger EJ, Ueki Y, Maye P. Investigating global gene expression changes in a murine model of cherubism. Bone. 115315. PMID 32165349 DOI: 10.1016/J.Bone.2020.115315 |
0.362 |
|
| 2019 |
Stewart TA, Liang C, Cotney JL, Noonan JP, Sanger TJ, Wagner GP. Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings. Nature Communications. 10: 3244. PMID 31324809 DOI: 10.1038/S41467-019-11215-8 |
0.31 |
|
| 2019 |
Hsiao JS, Germain ND, Wilderman A, Stoddard C, Wojenski LA, Villafano GJ, Core L, Cotney J, Chamberlain SJ. A bipartite boundary element restricts imprinting to mature neurons. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674673 DOI: 10.1073/Pnas.1815279116 |
0.337 |
|
| 2018 |
Blankvoort S, Witter MP, Noonan J, Cotney J, Kentros C. Marked Diversity of Unique Cortical Enhancers Enables Neuron-Specific Tools by Enhancer-Driven Gene Expression. Current Biology : Cb. 28: 2103-2114.e5. PMID 30008330 DOI: 10.1016/J.Cub.2018.05.015 |
0.344 |
|
| 2018 |
Wilderman A, VanOudenhove J, Kron J, Noonan JP, Cotney J. High-Resolution Epigenomic Atlas of Human Embryonic Craniofacial Development. Cell Reports. 23: 1581-1597. PMID 29719267 DOI: 10.1016/J.Celrep.2018.03.129 |
0.366 |
|
| 2016 |
Oran AR, Adams CM, Zhang XY, Gennaro VJ, Pfeiffer HK, Mellert HS, Seidel HE, Mascioli K, Kaplan J, Gaballa MR, Shen C, Rigoutsos I, King MP, Cotney JL, Arnold JJ, et al. Multi-focal control of mitochondrial gene expression by oncogenic MYC provides potential therapeutic targets in cancer. Oncotarget. PMID 27590350 DOI: 10.18632/Oncotarget.11718 |
0.708 |
|
| 2016 |
Taylor A, Adams C, Zhang X, Gennaro V, Cotney J, Shadel G, Cameron C, Eischen C, McMahon S. Abstract 1256: Multi-focal control of mitochondrial gene expression by oncogenic MYC provides effective therapeutic targets in cancer Cancer Research. 76: 1256-1256. DOI: 10.1158/1538-7445.Am2016-1256 |
0.704 |
|
| 2015 |
Cotney J, Muhle RA, Sanders SJ, Liu L, Willsey AJ, Niu W, Liu W, Klei L, Lei J, Yin J, Reilly SK, Tebbenkamp AT, Bichsel C, Pletikos M, Sestan N, et al. The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment. Nature Communications. 6: 6404. PMID 25752243 DOI: 10.1038/Ncomms7404 |
0.347 |
|
| 2015 |
Reilly SK, Yin J, Ayoub AE, Emera D, Leng J, Cotney J, Sarro R, Rakic P, Noonan JP. Evolutionary genomics. Evolutionary changes in promoter and enhancer activity during human corticogenesis. Science (New York, N.Y.). 347: 1155-9. PMID 25745175 DOI: 10.1126/Science.1260943 |
0.402 |
|
| 2015 |
Cotney JL, Noonan JP. Chromatin immunoprecipitation with fixed animal tissues and preparation for high-throughput sequencing. Cold Spring Harbor Protocols. 2015: 191-9. PMID 25646502 DOI: 10.1101/Pdb.Prot084848 |
0.361 |
|
| 2015 |
Taylor A, Zhang X, Cotney J, Shadel G, Cameron C, McMahon S. Abstract A05: The mitochondrial RNA polymerase is an essential downstream effector of the MYC oncoprotein Molecular Cancer Research. 13. DOI: 10.1158/1557-3125.Myc15-A05 |
0.727 |
|
| 2013 |
Willsey AJ, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell. 155: 997-1007. PMID 24267886 DOI: 10.1016/J.Cell.2013.10.020 |
0.353 |
|
| 2013 |
Cotney J, Leng J, Yin J, Reilly SK, DeMare LE, Emera D, Ayoub AE, Rakic P, Noonan JP. The evolution of lineage-specific regulatory activities in the human embryonic limb. Cell. 154: 185-96. PMID 23827682 DOI: 10.1016/J.Cell.2013.05.056 |
0.423 |
|
| 2013 |
DeMare LE, Leng J, Cotney J, Reilly SK, Yin J, Sarro R, Noonan JP. The genomic landscape of cohesin-associated chromatin interactions. Genome Research. 23: 1224-34. PMID 23704192 DOI: 10.1101/Gr.156570.113 |
0.332 |
|
| 2012 |
Cotney J, Leng J, Oh S, DeMare LE, Reilly SK, Gerstein MB, Noonan JP. Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. Genome Research. 22: 1069-80. PMID 22421546 DOI: 10.1101/Gr.129817.111 |
0.385 |
|
| 2012 |
Raimundo N, Song L, Shutt TE, McKay SE, Cotney J, Guan MX, Gilliland TC, Hohuan D, Santos-Sacchi J, Shadel GS. Mitochondrial stress engages E2F1 apoptotic signaling to cause deafness. Cell. 148: 716-26. PMID 22341444 DOI: 10.1016/J.Cell.2011.12.027 |
0.687 |
|
| 2011 |
Surovtseva YV, Shutt TE, Cotney J, Cimen H, Chen SY, Koc EC, Shadel GS. Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription. Proceedings of the National Academy of Sciences of the United States of America. 108: 17921-6. PMID 22003127 DOI: 10.1073/Pnas.1108852108 |
0.729 |
|
| 2011 |
Ayoub AE, Oh S, Xie Y, Leng J, Cotney J, Dominguez MH, Noonan JP, Rakic P. Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 108: 14950-5. PMID 21873192 DOI: 10.1073/Pnas.1112213108 |
0.36 |
|
| 2010 |
Shutt TE, Lodeiro MF, Cotney J, Cameron CE, Shadel GS. Core human mitochondrial transcription apparatus is a regulated two-component system in vitro. Proceedings of the National Academy of Sciences of the United States of America. 107: 12133-8. PMID 20562347 DOI: 10.1073/Pnas.0910581107 |
0.708 |
|
| 2009 |
Cotney J, McKay SE, Shadel GS. Elucidation of separate, but collaborative functions of the rRNA methyltransferase-related human mitochondrial transcription factors B1 and B2 in mitochondrial biogenesis reveals new insight into maternally inherited deafness. Human Molecular Genetics. 18: 2670-82. PMID 19417006 DOI: 10.1093/Hmg/Ddp208 |
0.717 |
|
| 2007 |
Cotney J, Wang Z, Shadel GS. Relative abundance of the human mitochondrial transcription system and distinct roles for h-mtTFB1 and h-mtTFB2 in mitochondrial biogenesis and gene expression. Nucleic Acids Research. 35: 4042-54. PMID 17557812 DOI: 10.1093/Nar/Gkm424 |
0.696 |
|
| 2007 |
Wang Z, Cotney J, Shadel GS. Human mitochondrial ribosomal protein MRPL12 interacts directly with mitochondrial RNA polymerase to modulate mitochondrial gene expression. The Journal of Biological Chemistry. 282: 12610-8. PMID 17337445 DOI: 10.1074/Jbc.M700461200 |
0.729 |
|
| 2006 |
Cotney J, Shadel GS. Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2. Journal of Molecular Evolution. 63: 707-17. PMID 17031457 DOI: 10.1007/S00239-006-0075-1 |
0.713 |
|
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