| Year |
Citation |
Score |
| 2023 |
Grow EJ, Liu Y, Fan Z, Perisse IV, Patrick T, Regouski M, Shadle S, Polejaeva I, White KL, Cairns BR. Chromatin Reprogramming of In Vitro Fertilized and Somatic Cell Nuclear Transfer Bovine Embryos During Embryonic Genome Activation. Biorxiv : the Preprint Server For Biology. PMID 37090641 DOI: 10.1101/2023.04.10.536281 |
0.321 |
|
| 2023 |
Smith CM, Grow EJ, Shadle SC, Cairns BR. Multiple repeat regions within mouse DUX recruit chromatin regulators to facilitate an embryonic gene expression program. Biorxiv : the Preprint Server For Biology. PMID 37034731 DOI: 10.1101/2023.03.29.534786 |
0.366 |
|
| 2022 |
Hickey GJ, Wike CL, Nie X, Guo Y, Tan M, Murphy PJ, Cairns BR. Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos. Elife. 11. PMID 34982026 DOI: 10.7554/eLife.67738 |
0.382 |
|
| 2022 |
Sun W, Guo J, McClellan D, Poeschla A, Bareyan D, Casey MJ, Cairns BR, Tantin D, Engel ME. GFI1 Cooperates with IKZF1/IKAROS to Activate Gene Expression in T-cell Acute Lymphoblastic Leukemia. Molecular Cancer Research : McR. PMID 34980595 DOI: 10.1158/1541-7786.MCR-21-0352 |
0.341 |
|
| 2021 |
Nakamura R, Motai Y, Kumagai M, Wike CL, Nishiyama H, Nakatani Y, Durand NC, Kondo K, Kondo T, Tsukahara T, Shimada A, Cairns BR, Lieberman Aiden E, Morishita S, Takeda H. CTCF looping is established during gastrulation in medaka embryos. Genome Research. PMID 34006570 DOI: 10.1101/gr.269951.120 |
0.316 |
|
| 2021 |
Wike CL, Guo Y, Tan M, Nakamura R, Shaw DK, Díaz N, Whittaker-Tademy AF, Durand NC, Lieberman Aiden E, Vaquerizas JM, Grunwald D, Takeda H, Cairns BR. Chromatin architecture transitions from zebrafish sperm through early embryogenesis. Genome Research. PMID 34006569 DOI: 10.1101/gr.269860.120 |
0.311 |
|
| 2021 |
D'Orazio FM, Balwierz PJ, González AJ, Guo Y, Hernández-Rodríguez B, Wheatley L, Jasiulewicz A, Hadzhiev Y, Vaquerizas JM, Cairns B, Lenhard B, Müller F. Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization. Developmental Cell. PMID 33651978 DOI: 10.1016/j.devcel.2021.02.007 |
0.354 |
|
| 2020 |
Schlichter A, Kasten MM, Parnell TJ, Cairns BR. Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes. Elife. 9. PMID 32496195 DOI: 10.7554/Elife.58130 |
0.511 |
|
| 2020 |
Gambini A, Stein P, Savy V, Grow EJ, Papas BN, Zhang Y, Kenan AC, Padilla-Banks E, Cairns BR, Williams CJ. Developmentally Programmed Tankyrase Activity Upregulates β-Catenin and Licenses Progression of Embryonic Genome Activation. Developmental Cell. PMID 32442396 DOI: 10.1016/J.Devcel.2020.04.018 |
0.395 |
|
| 2020 |
Guo J, Nie X, Giebler M, Mlcochova H, Wang Y, Grow EJ, Kim R, Tharmalingam M, Matilionyte G, Lindskog C, Carrell DT, Mitchell RT, Goriely A, Hotaling JM, ... Cairns BR, et al. The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty. Cell Stem Cell. PMID 31928944 DOI: 10.1016/J.Stem.2019.12.005 |
0.349 |
|
| 2020 |
Schlichter A, Kasten MM, Parnell TJ, Cairns BR. Author response: Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes Elife. DOI: 10.7554/Elife.58130.Sa2 |
0.358 |
|
| 2019 |
Ye Y, Wu H, Chen K, Clapier CR, Verma N, Zhang W, Deng H, Cairns BR, Gao N, Chen Z. Structure of the RSC complex bound to the nucleosome. Science (New York, N.Y.). PMID 31672915 DOI: 10.1126/Science.Aay0033 |
0.434 |
|
| 2019 |
Rougeot J, Chrispijn ND, Aben M, Elurbe DM, Andralojc KM, Murphy PJ, Jansen PWTC, Vermeulen M, Cairns BR, Kamminga LM. Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan. Development (Cambridge, England). PMID 31488564 DOI: 10.1242/Dev.178590 |
0.415 |
|
| 2019 |
Cakiroglu A, Clapier CR, Ehrensberger AH, Darbo E, Cairns BR, Luscombe NM, Svejstrup J. Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes. Genome Research. PMID 31097474 DOI: 10.1101/Gr.243139.118 |
0.466 |
|
| 2019 |
Khoddami V, Yerra A, Mosbruger TL, Fleming AM, Burrows CJ, Cairns BR. Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 30872485 DOI: 10.1073/Pnas.1817334116 |
0.351 |
|
| 2019 |
Murphy PJ, Guo J, Jenkins TG, Hoidal JR, Huecksteadt T, Hotaling J, Carrell DT, Cairns BR, Aston KI. Cigarette smoke-induced oxidative stress alters DNA methylation patterns in sperm and neurological gene expression patterns in offspring Fertility and Sterility. 112: e337. DOI: 10.1016/J.Fertnstert.2019.07.973 |
0.331 |
|
| 2019 |
Guo J, Nie X, Carrell DT, Hotaling J, Cairns BR. Single cell gene expression of human pubertal testis development Fertility and Sterility. 112: e257. DOI: 10.1016/J.Fertnstert.2019.07.776 |
0.303 |
|
| 2018 |
Guo J, Grow EJ, Mlcochova H, Maher GJ, Lindskog C, Nie X, Guo Y, Takei Y, Yun J, Cai L, Kim R, Carrell DT, Goriely A, Hotaling JM, Cairns BR. The adult human testis transcriptional cell atlas. Cell Research. PMID 30315278 DOI: 10.1038/S41422-018-0099-2 |
0.377 |
|
| 2018 |
Gupta S, Albertson DJ, Parnell TJ, Butterfield A, Weston A, Pappas LM, Dalley B, O'Shea JM, Lowrance WT, Cairns BR, Schiffman JD, Sharma S. Histone deacetylase inhibition has targeted clinical benefit in ARID1A mutated advanced urothelial carcinoma. Molecular Cancer Therapeutics. PMID 30301863 DOI: 10.1158/1535-7163.Mct-17-0957 |
0.342 |
|
| 2018 |
Murphy PJ, Wu SF, James CR, Wike CL, Cairns BR. Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming. Cell. PMID 29456083 DOI: 10.1016/J.Cell.2018.01.022 |
0.681 |
|
| 2017 |
Guo J, Grow EJ, Yi C, Mlcochova H, Maher GJ, Lindskog C, Murphy PJ, Wike CL, Carrell DT, Goriely A, Hotaling JM, Cairns BR. Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development. Cell Stem Cell. 21: 533-546.e6. PMID 28985528 DOI: 10.1016/J.Stem.2017.09.003 |
0.483 |
|
| 2017 |
Jenkins TG, James ER, Alonso DF, Hoidal JR, Murphy PJ, Hotaling JM, Cairns BR, Carrell DT, Aston KI. Cigarette smoking significantly alters sperm DNA methylation patterns. Andrology. PMID 28950428 DOI: 10.1111/Andr.12416 |
0.352 |
|
| 2017 |
Clapier CR, Iwasa J, Cairns BR, Peterson CL. Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes. Nature Reviews. Molecular Cell Biology. PMID 28512350 DOI: 10.1038/Nrm.2017.26 |
0.497 |
|
| 2017 |
Hendrickson PG, Doráis JA, Grow EJ, Whiddon JL, Lim JW, Wike CL, Weaver BD, Pflueger C, Emery BR, Wilcox AL, Nix DA, Peterson CM, Tapscott SJ, Carrell DT, Cairns BR. Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons. Nature Genetics. PMID 28459457 DOI: 10.1097/Ogx.0000000000000471 |
0.426 |
|
| 2016 |
Murphy PJ, Cairns BR. Genome-wide DNA methylation profiling in zebrafish. Methods in Cell Biology. 135: 345-359. PMID 27443935 DOI: 10.1016/Bs.Mcb.2016.05.002 |
0.474 |
|
| 2016 |
Ramakrishnan S, Pokhrel S, Palani S, Pflueger C, Parnell TJ, Cairns BR, Bhaskara S, Chandrasekharan MB. Counteracting H3K4 methylation modulators Set1 and Jhd2 co-regulate chromatin dynamics and gene transcription. Nature Communications. 7: 11949. PMID 27325136 DOI: 10.1038/Ncomms11949 |
0.494 |
|
| 2016 |
Clapier CR, Kasten MM, Parnell TJ, Viswanathan R, Szerlong H, Sirinakis G, Zhang Y, Cairns BR. Regulation of DNA Translocation Efficiency within the Chromatin Remodeler RSC/Sth1 Potentiates Nucleosome Sliding and Ejection. Molecular Cell. 62: 453-461. PMID 27153540 DOI: 10.1016/J.Molcel.2016.03.032 |
0.446 |
|
| 2016 |
Hendrickson PG, Cairns BR. Tet proteins enhance the developmental hourglass. Nature Genetics. 48: 345-7. PMID 27023773 DOI: 10.1038/Ng.3533 |
0.415 |
|
| 2015 |
Varshney D, Vavrova-Anderson J, Oler AJ, Cairns BR, White RJ. Selective repression of SINE transcription by RNA polymerase III. Mobile Genetic Elements. 5: 86-91. PMID 26942044 DOI: 10.1080/2159256X.2015.1096997 |
0.77 |
|
| 2015 |
Hammoud SS, Low DH, Yi C, Lee CL, Oatley JM, Payne CJ, Carrell DT, Guccione E, Cairns BR. Transcription and imprinting dynamics in developing postnatal male germline stem cells. Genes & Development. 29: 2312-24. PMID 26545815 DOI: 10.1101/Gad.261925.115 |
0.405 |
|
| 2015 |
Huang F, Ramakrishnan S, Pokhrel S, Pflueger C, Parnell TJ, Kasten MM, Currie SL, Bhachech N, Horikoshi M, Graves BJ, Cairns BR, Bhaskara S, Chandrasekharan MB. Interaction of the Jhd2 H3K4 demethylase with chromatin is controlled by histone H2A surfaces and restricted by H2B ubiquitination. The Journal of Biological Chemistry. PMID 26451043 DOI: 10.1074/Jbc.M115.693085 |
0.49 |
|
| 2015 |
Aston KI, Uren PJ, Jenkins TG, Horsager A, Cairns BR, Smith AD, Carrell DT. Aberrant sperm DNA methylation predicts male fertility status and embryo quality. Fertility and Sterility. PMID 26361204 DOI: 10.1016/J.Fertnstert.2015.08.019 |
0.343 |
|
| 2015 |
Khoddami V, Yerra A, Cairns BR. Experimental Approaches for Target Profiling of RNA Cytosine Methyltransferases. Methods in Enzymology. 560: 273-96. PMID 26253975 DOI: 10.1016/Bs.Mie.2015.03.008 |
0.335 |
|
| 2015 |
Parnell TJ, Schlichter A, Wilson BG, Cairns BR. The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism. Elife. 4: e06073. PMID 25821983 DOI: 10.7554/Elife.06073 |
0.476 |
|
| 2015 |
Varshney D, Vavrova-Anderson J, Oler AJ, Cowling VH, Cairns BR, White RJ. SINE transcription by RNA polymerase III is suppressed by histone methylation but not by DNA methylation. Nature Communications. 6: 6569. PMID 25798578 DOI: 10.1038/Ncomms7569 |
0.755 |
|
| 2015 |
Johnson DP, Spitz GS, Tharkar S, Quayle SN, Shearstone JR, Jones S, McDowell ME, Wellman H, Tyler JK, Cairns BR, Chandrasekharan MB, Bhaskara S. HDAC1,2 inhibition impairs EZH2- and BBAP-mediated DNA repair to overcome chemoresistance in EZH2 gain-of-function mutant diffuse large B-cell lymphoma. Oncotarget. 6: 4863-87. PMID 25605023 DOI: 10.18632/Oncotarget.3120 |
0.392 |
|
| 2015 |
Parnell TJ, Schlichter A, Wilson BG, Cairns BR. Author response: The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism Elife. DOI: 10.7554/Elife.06073.022 |
0.418 |
|
| 2015 |
Morrison M, Khuu S, Schiffman J, Cairns B, Rutter J, Winge D, Speleman F, Stewart R. Abstract A04: Metabolic reprogramming of MYCN amplified neuroblastoma Molecular Cancer Research. 13. DOI: 10.1158/1557-3125.Myc15-A04 |
0.308 |
|
| 2014 |
Jenkins TG, Aston KI, Pflueger C, Cairns BR, Carrell DT. Age-associated sperm DNA methylation alterations: possible implications in offspring disease susceptibility. Plos Genetics. 10: e1004458. PMID 25010591 DOI: 10.1371/Journal.Pgen.1004458 |
0.403 |
|
| 2014 |
Hammoud SS, Low DH, Yi C, Carrell DT, Guccione E, Cairns BR. Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis. Cell Stem Cell. 15: 239-53. PMID 24835570 DOI: 10.1016/J.Stem.2014.04.006 |
0.53 |
|
| 2014 |
Alla RK, Cairns BR. RNA polymerase III transcriptomes in human embryonic stem cells and induced pluripotent stem cells, and relationships with pluripotency transcription factors. Plos One. 9: e85648. PMID 24465633 DOI: 10.1371/Journal.Pone.0085648 |
0.796 |
|
| 2014 |
Khoddami V, Cairns BR. Transcriptome-wide target profiling of RNA cytosine methyltransferases using the mechanism-based enrichment procedure Aza-IP. Nature Protocols. 9: 337-61. PMID 24434802 DOI: 10.1038/Nprot.2014.014 |
0.336 |
|
| 2013 |
Hong C, Clement NL, Clement S, Hammoud SS, Carrell DT, Cairns BR, Snell Q, Clement MJ, Johnson WE. Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. Bmc Bioinformatics. 14: 337. PMID 24261665 DOI: 10.1186/1471-2105-14-337 |
0.37 |
|
| 2013 |
Nelson AC, Cauceglia JW, Merkley SD, Youngson NA, Oler AJ, Nelson RJ, Cairns BR, Whitelaw E, Potts WK. Reintroducing domesticated wild mice to sociality induces adaptive transgenerational effects on MUP expression. Proceedings of the National Academy of Sciences of the United States of America. 110: 19848-53. PMID 24248373 DOI: 10.1073/Pnas.1310427110 |
0.66 |
|
| 2013 |
Bhaskara S, Jacques V, Rusche JR, Olson EN, Cairns BR, Chandrasekharan MB. Histone deacetylases 1 and 2 maintain S-phase chromatin and DNA replication fork progression. Epigenetics & Chromatin. 6: 27. PMID 23947532 DOI: 10.1186/1756-8935-6-27 |
0.498 |
|
| 2013 |
Jenkins TG, Aston KI, Cairns BR, Carrell DT. Paternal aging and associated intraindividual alterations of global sperm 5-methylcytosine and 5-hydroxymethylcytosine levels. Fertility and Sterility. 100: 945-51. PMID 23809503 DOI: 10.1016/J.Fertnstert.2013.05.039 |
0.309 |
|
| 2013 |
Potok ME, Nix DA, Parnell TJ, Cairns BR. Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern. Cell. 153: 759-72. PMID 23663776 DOI: 10.1016/J.Cell.2013.04.030 |
0.452 |
|
| 2013 |
Khoddami V, Cairns BR. Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nature Biotechnology. 31: 458-64. PMID 23604283 DOI: 10.1038/Nbt.2566 |
0.354 |
|
| 2013 |
Hammoud SS, Cairns BR, Jones DA. Epigenetic regulation of colon cancer and intestinal stem cells. Current Opinion in Cell Biology. 25: 177-83. PMID 23402869 DOI: 10.1016/J.Ceb.2013.01.007 |
0.397 |
|
| 2013 |
Schubert HL, Wittmeyer J, Kasten MM, Hinata K, Rawling DC, Héroux A, Cairns BR, Hill CP. Structure of an actin-related subcomplex of the SWI/SNF chromatin remodeler. Proceedings of the National Academy of Sciences of the United States of America. 110: 3345-50. PMID 23401505 DOI: 10.1073/Pnas.1215379110 |
0.461 |
|
| 2013 |
Ehrensberger KM, Mason C, Corkins ME, Anderson C, Dutrow N, Cairns BR, Dalley B, Milash B, Bird AJ. Zinc-dependent regulation of the Adh1 antisense transcript in fission yeast. The Journal of Biological Chemistry. 288: 759-69. PMID 23223230 DOI: 10.1074/Jbc.M112.406165 |
0.426 |
|
| 2013 |
Hammoud SS, Cairns BR, Carrell DT. Analysis of gene-specific and genome-wide sperm DNA methylation. Methods in Molecular Biology (Clifton, N.J.). 927: 451-8. PMID 22992936 DOI: 10.1007/978-1-62703-038-0_39 |
0.449 |
|
| 2013 |
Potok ME, Nix DA, Parnell TJ, Cairns BR. Germline epigenetics, and reprogramming in zebrafish early embryos Epigenetics & Chromatin. 6: O23. DOI: 10.1186/1756-8935-6-S1-O23 |
0.472 |
|
| 2012 |
Clapier CR, Cairns BR. Regulation of ISWI involves inhibitory modules antagonized by nucleosomal epitopes. Nature. 492: 280-4. PMID 23143334 DOI: 10.1038/Nature11625 |
0.481 |
|
| 2012 |
Oler AJ, Traina-Dorge S, Derbes RS, Canella D, Cairns BR, Roy-Engel AM. Alu expression in human cell lines and their retrotranspositional potential. Mobile Dna. 3: 11. PMID 22716230 DOI: 10.1186/1759-8753-3-11 |
0.643 |
|
| 2012 |
Luo W, Milash B, Dalley B, Smith R, Zhou H, Dutrow N, Cairns BR, Lessnick SL. Antibody detection of translocations in Ewing sarcoma. Embo Molecular Medicine. 4: 453-61. PMID 22419563 DOI: 10.1002/Emmm.201200225 |
0.305 |
|
| 2012 |
Oler AJ, Cairns BR. PP4 dephosphorylates Maf1 to couple multiple stress conditions to RNA polymerase III repression. The Embo Journal. 31: 1440-52. PMID 22333918 DOI: 10.1038/Emboj.2011.501 |
0.723 |
|
| 2012 |
Swierczek SI, Piterkova L, Jelinek J, Agarwal N, Hammoud S, Wilson A, Hickman K, Parker CJ, Cairns BR, Cairns B, Prchal JT. Methylation of AR locus does not always reflect X chromosome inactivation state. Blood. 119: e100-9. PMID 22286197 DOI: 10.1182/Blood-2011-11-390351 |
0.354 |
|
| 2011 |
Wu SF, Zhang H, Hammoud SS, Potok M, Nix DA, Jones DA, Cairns BR. DNA methylation profiling in zebrafish. Methods in Cell Biology. 104: 327-39. PMID 21924171 DOI: 10.1016/B978-0-12-374814-0.00018-5 |
0.701 |
|
| 2011 |
Malik SS, Rich E, Viswanathan R, Cairns BR, Fischer CJ. Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC. Biochemistry. 50: 7881-90. PMID 21834590 DOI: 10.1021/Bi200837B |
0.39 |
|
| 2011 |
Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT. Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men. Human Reproduction (Oxford, England). 26: 2558-69. PMID 21685136 DOI: 10.1093/Humrep/Der192 |
0.455 |
|
| 2011 |
Sirinakis G, Clapier CR, Gao Y, Viswanathan R, Cairns BR, Zhang Y. The RSC chromatin remodelling ATPase translocates DNA with high force and small step size. The Embo Journal. 30: 2364-72. PMID 21552204 DOI: 10.1038/Emboj.2011.141 |
0.38 |
|
| 2011 |
Wu SF, Zhang H, Cairns BR. Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm. Genome Research. 21: 578-89. PMID 21383318 DOI: 10.1101/Gr.113167.110 |
0.733 |
|
| 2011 |
Kasten MM, Clapier CR, Cairns BR. SnapShot: Chromatin remodeling: SWI/SNF. Cell. 144: 310.e1. PMID 21241897 DOI: 10.1016/J.Cell.2011.01.007 |
0.436 |
|
| 2010 |
Rai K, Sarkar S, Broadbent TJ, Voas M, Grossmann KF, Nadauld LD, Dehghanizadeh S, Hagos FT, Li Y, Toth RK, Chidester S, Bahr TM, Johnson WE, Sklow B, Burt R, ... Cairns BR, et al. DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC. Cell. 142: 930-42. PMID 20850014 DOI: 10.1016/J.Cell.2010.08.030 |
0.74 |
|
| 2010 |
Oler AJ, Alla RK, Roberts DN, Wong A, Hollenhorst PC, Chandler KJ, Cassiday PA, Nelson CA, Hagedorn CH, Graves BJ, Cairns BR. Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors. Nature Structural & Molecular Biology. 17: 620-8. PMID 20418882 DOI: 10.1038/Nsmb.1801 |
0.782 |
|
| 2010 |
Rai K, Jafri IF, Chidester S, James SR, Karpf AR, Cairns BR, Jones DA. Dnmt3 and G9a cooperate for tissue-specific development in zebrafish. The Journal of Biological Chemistry. 285: 4110-21. PMID 19946145 DOI: 10.1074/Jbc.M109.073676 |
0.706 |
|
| 2010 |
Hammoud SS, Purwar J, Pflueger C, Cairns BR, Carrell DT. Alterations in sperm DNA methylation patterns at imprinted loci in two classes of infertility. Fertility and Sterility. 94: 1728-33. PMID 19880108 DOI: 10.1016/J.Fertnstert.2009.09.010 |
0.42 |
|
| 2009 |
Cairns BR. The logic of chromatin architecture and remodelling at promoters. Nature. 461: 193-8. PMID 19741699 DOI: 10.1038/Nature08450 |
0.504 |
|
| 2009 |
Hammoud SS, Nix DA, Zhang H, Purwar J, Carrell DT, Cairns BR. Distinctive chromatin in human sperm packages genes for embryo development. Nature. 460: 473-8. PMID 19525931 DOI: 10.1038/Nature08162 |
0.596 |
|
| 2009 |
Clapier CR, Cairns BR. The biology of chromatin remodeling complexes. Annual Review of Biochemistry. 78: 273-304. PMID 19355820 DOI: 10.1146/Annurev.Biochem.77.062706.153223 |
0.481 |
|
| 2009 |
Zhang Y, Sirinakis G, Gao Y, Clapier CR, Cairns B. Mechanisms of ATP-dependent Chromatin Remodeling Revealed by Single-molecule Manipulation Studies Biophysical Journal. 96: 217a. DOI: 10.1016/J.Bpj.2008.12.1902 |
0.474 |
|
| 2008 |
Rai K, Huggins IJ, James SR, Karpf AR, Jones DA, Cairns BR. DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell. 135: 1201-12. PMID 19109892 DOI: 10.1016/J.Cell.2008.11.042 |
0.722 |
|
| 2008 |
Dutrow N, Nix DA, Holt D, Milash B, Dalley B, Westbroek E, Parnell TJ, Cairns BR. Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping. Nature Genetics. 40: 977-86. PMID 18641648 DOI: 10.1038/Ng.196 |
0.432 |
|
| 2008 |
Szerlong H, Hinata K, Viswanathan R, Erdjument-Bromage H, Tempst P, Cairns BR. The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases. Nature Structural & Molecular Biology. 15: 469-76. PMID 18408732 DOI: 10.1038/Nsmb.1403 |
0.341 |
|
| 2008 |
Parnell TJ, Huff JT, Cairns BR. RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes. The Embo Journal. 27: 100-10. PMID 18059476 DOI: 10.1038/Sj.Emboj.7601946 |
0.805 |
|
| 2007 |
Cairns BR. Chromatin remodeling: insights and intrigue from single-molecule studies. Nature Structural & Molecular Biology. 14: 989-96. PMID 17984961 DOI: 10.1038/Nsmb1333 |
0.436 |
|
| 2007 |
Fischer CJ, Saha A, Cairns BR. Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA. Biochemistry. 46: 12416-26. PMID 17918861 DOI: 10.1021/Bi700930N |
0.391 |
|
| 2007 |
VanDemark AP, Kasten MM, Ferris E, Heroux A, Hill CP, Cairns BR. Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation. Molecular Cell. 27: 817-28. PMID 17803945 DOI: 10.1016/J.Molcel.2007.08.018 |
0.363 |
|
| 2007 |
Gordon M, Holt DG, Panigrahi A, Wilhelm BT, Erdjument-Bromage H, Tempst P, Bähler J, Cairns BR. Genome-wide dynamics of SAPHIRE, an essential complex for gene activation and chromatin boundaries. Molecular and Cellular Biology. 27: 4058-69. PMID 17371846 DOI: 10.1128/Mcb.02044-06 |
0.507 |
|
| 2007 |
Leschziner AE, Saha A, Wittmeyer J, Zhang Y, Bustamante C, Cairns BR, Nogales E. Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method. Proceedings of the National Academy of Sciences of the United States of America. 104: 4913-8. PMID 17360331 DOI: 10.1073/Pnas.0700706104 |
0.367 |
|
| 2007 |
Rai K, Chidester S, Zavala CV, Manos EJ, James SR, Karpf AR, Jones DA, Cairns BR. Dnmt2 functions in the cytoplasm to promote liver, brain, and retina development in zebrafish. Genes & Development. 21: 261-6. PMID 17289917 DOI: 10.1101/Gad.1472907 |
0.735 |
|
| 2006 |
Zhang Y, Smith CL, Saha A, Grill SW, Mihardja S, Smith SB, Cairns BR, Peterson CL, Bustamante C. DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Molecular Cell. 24: 559-68. PMID 17188033 DOI: 10.1016/J.Molcel.2006.10.025 |
0.484 |
|
| 2006 |
Rai K, Nadauld LD, Chidester S, Manos EJ, James SR, Karpf AR, Cairns BR, Jones DA. Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during development. Molecular and Cellular Biology. 26: 7077-85. PMID 16980612 DOI: 10.1128/Mcb.00312-06 |
0.741 |
|
| 2006 |
Saha A, Wittmeyer J, Cairns BR. Mechanisms for nucleosome movement by ATP-dependent chromatin remodeling complexes. Results and Problems in Cell Differentiation. 41: 127-48. PMID 16909894 DOI: 10.1007/400_005 |
0.467 |
|
| 2006 |
Soutourina J, Bordas-Le Floch V, Gendrel G, Flores A, Ducrot C, Dumay-Odelot H, Soularue P, Navarro F, Cairns BR, Lefebvre O, Werner M. Rsc4 connects the chromatin remodeler RSC to RNA polymerases. Molecular and Cellular Biology. 26: 4920-33. PMID 16782880 DOI: 10.1128/Mcb.00415-06 |
0.467 |
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| 2006 |
Roberts DN, Wilson B, Huff JT, Stewart AJ, Cairns BR. Dephosphorylation and genome-wide association of Maf1 with Pol III-transcribed genes during repression. Molecular Cell. 22: 633-44. PMID 16762836 DOI: 10.1016/J.Molcel.2006.04.009 |
0.782 |
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| 2006 |
Shi X, Hong T, Walter KL, Ewalt M, Michishita E, Hung T, Carney D, Peña P, Lan F, Kaadige MR, Lacoste N, Cayrou C, Davrazou F, Saha A, Cairns BR, et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature. 442: 96-9. PMID 16728974 DOI: 10.1038/Nature04835 |
0.517 |
|
| 2006 |
Saha A, Wittmeyer J, Cairns BR. Chromatin remodelling: the industrial revolution of DNA around histones. Nature Reviews. Molecular Cell Biology. 7: 437-47. PMID 16723979 DOI: 10.1038/Nrm1945 |
0.455 |
|
| 2006 |
Da G, Lenkart J, Zhao K, Shiekhattar R, Cairns BR, Marmorstein R. Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes. Proceedings of the National Academy of Sciences of the United States of America. 103: 2057-62. PMID 16461455 DOI: 10.1073/Pnas.0510949103 |
0.431 |
|
| 2006 |
Wilson B, Erdjument-Bromage H, Tempst P, Cairns BR. The RSC chromatin remodeling complex bears an essential fungal-specific protein module with broad functional roles. Genetics. 172: 795-809. PMID 16204215 DOI: 10.1534/Genetics.105.047589 |
0.41 |
|
| 2005 |
Zhang H, Roberts DN, Cairns BR. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell. 123: 219-31. PMID 16239141 DOI: 10.1016/J.Cell.2005.08.036 |
0.618 |
|
| 2005 |
Saha A, Wittmeyer J, Cairns BR. Chromatin remodeling through directional DNA translocation from an internal nucleosomal site. Nature Structural & Molecular Biology. 12: 747-55. PMID 16086025 DOI: 10.1038/Nsmb973 |
0.434 |
|
| 2005 |
Chai B, Huang J, Cairns BR, Laurent BC. Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. Genes & Development. 19: 1656-61. PMID 16024655 DOI: 10.1101/Gad.1273105 |
0.388 |
|
| 2005 |
Cairns BR. Chromatin remodeling complexes: strength in diversity, precision through specialization. Current Opinion in Genetics & Development. 15: 185-90. PMID 15797201 DOI: 10.1016/J.Gde.2005.01.003 |
0.5 |
|
| 2005 |
Schlichter A, Cairns BR. Histone trimethylation by Set1 is coordinated by the RRM, autoinhibitory, and catalytic domains. The Embo Journal. 24: 1222-31. PMID 15775977 DOI: 10.1038/Sj.Emboj.7600607 |
0.389 |
|
| 2004 |
Cairns BR. Around the world of DNA damage INO80 days. Cell. 119: 733-5. PMID 15607967 DOI: 10.1016/J.Cell.2004.12.005 |
0.368 |
|
| 2004 |
Zhang H, Richardson DO, Roberts DN, Utley R, Erdjument-Bromage H, Tempst P, Côté J, Cairns BR. The Yaf9 component of the SWR1 and NuA4 complexes is required for proper gene expression, histone H4 acetylation, and Htz1 replacement near telomeres. Molecular and Cellular Biology. 24: 9424-36. PMID 15485911 DOI: 10.1128/Mcb.24.21.9424-9436.2004 |
0.587 |
|
| 2004 |
Kasten M, Szerlong H, Erdjument-Bromage H, Tempst P, Werner M, Cairns BR. Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14. The Embo Journal. 23: 1348-59. PMID 15014446 DOI: 10.1038/Sj.Emboj.7600143 |
0.446 |
|
| 2003 |
Roberts DN, Stewart AJ, Huff JT, Cairns BR. The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proceedings of the National Academy of Sciences of the United States of America. 100: 14695-700. PMID 14634212 DOI: 10.1073/Pnas.2435566100 |
0.785 |
|
| 2003 |
Szerlong H, Saha A, Cairns BR. The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling. The Embo Journal. 22: 3175-87. PMID 12805231 DOI: 10.1093/Emboj/Cdg296 |
0.461 |
|
| 2003 |
Kristjuhan A, Wittschieben BO, Walker J, Roberts D, Cairns BR, Svejstrup JQ. Spreading of Sir3 protein in cells with severe histone H3 hypoacetylation. Proceedings of the National Academy of Sciences of the United States of America. 100: 7551-6. PMID 12796514 DOI: 10.1073/Pnas.1332299100 |
0.465 |
|
| 2002 |
Kristjuhan A, Walker J, Suka N, Grunstein M, Roberts D, Cairns BR, Svejstrup JQ. Transcriptional inhibition of genes with severe histone h3 hypoacetylation in the coding region. Molecular Cell. 10: 925-33. PMID 12419235 DOI: 10.1016/S1097-2765(02)00647-0 |
0.461 |
|
| 2002 |
Romeo MJ, Angus-Hill ML, Sobering AK, Kamada Y, Cairns BR, Levin DE. HTL1 encodes a novel factor that interacts with the RSC chromatin remodeling complex in Saccharomyces cerevisiae. Molecular and Cellular Biology. 22: 8165-74. PMID 12417720 DOI: 10.1128/Mcb.22.23.8165-8174.2002 |
0.376 |
|
| 2002 |
Saha A, Wittmeyer J, Cairns BR. Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes & Development. 16: 2120-34. PMID 12183366 DOI: 10.1101/Gad.995002 |
0.439 |
|
| 2002 |
Damelin M, Simon I, Moy TI, Wilson B, Komili S, Tempst P, Roth FP, Young RA, Cairns BR, Silver PA. The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress. Molecular Cell. 9: 563-73. PMID 11931764 DOI: 10.1016/S1097-2765(02)00475-6 |
0.435 |
|
| 2001 |
Cairns BR. Emerging roles for chromatin remodeling in cancer biology Trends in Cell Biology. 11. PMID 11684437 DOI: 10.1016/S0962-8924(01)02125-0 |
0.447 |
|
| 2001 |
Angus-Hill ML, Schlichter A, Roberts D, Erdjument-Bromage H, Tempst P, Cairns BR. A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control Molecular Cell. 7: 741-751. PMID 11336698 DOI: 10.1016/S1097-2765(01)00219-2 |
0.475 |
|
| 2001 |
Sengupta SM, VanKanegan M, Persinger J, Logie C, Cairns BR, Peterson CL, Bartholomew B. The interactions of yeast SWI/SNF and RSC with the nucleosome before and after chromatin remodeling. The Journal of Biological Chemistry. 276: 12636-44. PMID 11304548 DOI: 10.1074/Jbc.M010470200 |
0.441 |
|
| 2001 |
Cairns BR. Silent chromatin - Holding transcription hostage? Trends in Biochemical Sciences. 26: 411-412. DOI: 10.1016/S0968-0004(01)01899-0 |
0.478 |
|
| 2001 |
Cairns BR. Promoter occupancy: who's on first – what's on second? Trends in Biochemical Sciences. 26: 90. DOI: 10.1016/S0968-0004(00)01772-2 |
0.516 |
|
| 1999 |
Cairns BR, Schlichter A, Erdjument-Bromage H, Tempst P, Kornberg RD, Winston F. Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Molecular Cell. 4: 715-23. PMID 10619019 DOI: 10.1016/S1097-2765(00)80382-2 |
0.667 |
|
| 1999 |
Neely KE, Hassan AH, Wallberg AE, Steger DJ, Cairns BR, Wright AP, Workman JL. Activation domain-mediated targeting of the SWI/SNF complex to promoters stimulates transcription from nucleosome arrays. Molecular Cell. 4: 649-55. PMID 10549297 DOI: 10.1016/S1097-2765(00)80216-6 |
0.45 |
|
| 1999 |
Whitehouse I, Flaus A, Cairns BR, White MF, Workman JL, Owen-Hughes T. Nucleosome mobilization catalysed by the yeast SWI/SNF complex. Nature. 400: 784-7. PMID 10466730 DOI: 10.1038/23506 |
0.514 |
|
| 1998 |
Cairns BR, Erdjument-Bromage H, Tempst P, Winston F, Kornberg RD. Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF. Molecular Cell. 2: 639-51. PMID 9844636 DOI: 10.1016/S1097-2765(00)80162-8 |
0.662 |
|
| 1998 |
Lorch Y, Cairns BR, Zhang M, Kornberg RD. Activated RSC-nucleosome complex and persistently altered form of the nucleosome. Cell. 94: 29-34. PMID 9674424 DOI: 10.1016/S0092-8674(00)81218-0 |
0.613 |
|
| 1998 |
Cairns BR. Chromatin remodeling machines: Similar motors, ulterior motives Trends in Biochemical Sciences. 23: 20-24. PMID 9478131 DOI: 10.1016/S0968-0004(97)01160-2 |
0.472 |
|
| 1997 |
Cao Y, Cairns BR, Kornberg RD, Laurent BC. Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression. Molecular and Cellular Biology. 17: 3323-34. PMID 9154831 DOI: 10.1128/Mcb.17.6.3323 |
0.612 |
|
| 1996 |
Cairns BR, Lorch Y, Li Y, Zhang M, Lacomis L, Erdjument-Bromage H, Tempst P, Du J, Laurent B, Kornberg RD. RSC, an essential, abundant chromatin-remodeling complex. Cell. 87: 1249-60. PMID 8980231 DOI: 10.1016/S0092-8674(00)81820-6 |
0.635 |
|
| 1996 |
Miller ME, Cairns BR, Levinson RS, Yamamoto KR, Engel DA, Smith MM. Adenovirus E1A specifically blocks SWI/SNF-dependent transcriptional activation. Molecular and Cellular Biology. 16: 5737-43. PMID 8816487 DOI: 10.1128/Mcb.16.10.5737 |
0.465 |
|
| 1996 |
Cairns BR, Levinson RS, Yamamoto KR, Kornberg RD. Essential role of Swp73p in the function of yeast Swi/Snf complex. Genes & Development. 10: 2131-44. PMID 8804308 DOI: 10.1101/Gad.10.17.2131 |
0.607 |
|
| 1996 |
Wang W, Xue Y, Zhou S, Kuo A, Cairns BR, Crabtree GR. Diversity and specialization of mammalian SWI/SNF complexes. Genes & Development. 10: 2117-30. PMID 8804307 DOI: 10.1101/Gad.10.17.2117 |
0.46 |
|
| 1996 |
Bardwell L, Cook JG, Chang EC, Cairns BR, Thorner J. Signaling in the yeast pheromone response pathway: specific and high-affinity interaction of the mitogen-activated protein (MAP) kinases Kss1 and Fus3 with the upstream MAP kinase kinase Ste7. Molecular and Cellular Biology. 16: 3637-50. PMID 8668180 DOI: 10.1128/Mcb.16.7.3637 |
0.311 |
|
| 1996 |
Cairns BR, Henry NL, Kornberg RD. TFG/TAF30/ANC1, a component of the yeast SWI/SNF complex that is similar to the leukemogenic proteins ENL and AF-9. Molecular and Cellular Biology. 16: 3308-16. PMID 8668146 DOI: 10.1128/Mcb.16.7.3308 |
0.615 |
|
| 1995 |
Treich I, Cairns BR, De los Santos T, Brewster E, Carlson M. SNF11, a new component of the yeast SNF-SWI complex that interacts with a conserved region of SNF2 Molecular and Cellular Biology. 15: 4240-4248. PMID 7623818 DOI: 10.1128/Mcb.15.8.4240 |
0.439 |
|
| 1994 |
Cairns BR, Kim YJ, Sayre MH, Laurent BC, Kornberg RD. A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast Proceedings of the National Academy of Sciences of the United States of America. 91: 1950-1954. PMID 8127913 DOI: 10.1073/Pnas.91.5.1950 |
0.606 |
|
| 1992 |
Cairns BR, Ramer SW, Kornberg RD. Order of action of components in the yeast pheromone response pathway revealed with a dominant allele of the STE11 kinase and the multiple phosphorylation of the STE7 kinase Genes and Development. 6: 1305-1318. PMID 1628833 DOI: 10.1101/Gad.6.7.1305 |
0.5 |
|
| 1991 |
Genske JE, Cairns BR, Stack SP, Landfear SM. Structure and Regulation of Histone H2B mRNAs from Leishmania enriettii Molecular and Cellular Biology. 11: 240-249. PMID 1986223 DOI: 10.1128/Mcb.11.1.240 |
0.397 |
|
| 1990 |
Stein DA, Cairns BR, Landfear SM. Developmentally regulated transporter in Leishmania is encoded by a family of clustered genes Nucleic Acids Research. 18: 1549-1557. PMID 2326193 DOI: 10.1093/Nar/18.6.1549 |
0.334 |
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