Michael Donoghue, Ph.D. - Publications

Yale University, New Haven, CT 

190 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Penagos Zuluaga JC, van der Werff H, Park B, Eaton DAR, Comita LS, Queenborough SA, Donoghue MJ. Resolved phylogenetic relationships in the Ocotea complex (Supraocotea) facilitate phylogenetic classification and studies of character evolution. American Journal of Botany. PMID 33818757 DOI: 10.1002/ajb2.1632  0.48
2020 Moeglein MK, Chatelet DS, Donoghue MJ, Edwards EJ. Evolutionary dynamics of genome size in a radiation of woody plants. American Journal of Botany. PMID 33079383 DOI: 10.1002/ajb2.1544  1
2020 Nürk NM, Linder HP, Onstein RE, Larcombe MJ, Hughes CE, Piñeiro Fernández L, Schlüter PM, Valente L, Beierkuhnlein C, Cutts V, Donoghue MJ, Edwards EJ, Field R, Flantua SGA, Higgins SI, et al. Diversification in evolutionary arenas-Assessment and synthesis. Ecology and Evolution. 10: 6163-6182. PMID 32607221 DOI: 10.1002/Ece3.6313  1
2020 Landis MJ, Edwards EJ, Donoghue MJ. Modeling phylogenetic biome shifts on a planet with a past. Systematic Biology. PMID 32514540 DOI: 10.1093/Sysbio/Syaa045  1
2020 Landis MJ, Eaton DAR, Clement WL, Park B, Spriggs EL, Sweeney PW, Edwards EJ, Donoghue MJ. Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum. Systematic Biology. PMID 32267945 DOI: 10.1093/Sysbio/Syaa027  1
2020 Sinnott-Armstrong MA, Lee C, Clement WL, Donoghue MJ. Fruit syndromes in Viburnum: correlated evolution of color, nutritional content, and morphology in bird-dispersed fleshy fruits. Bmc Evolutionary Biology. 20: 7. PMID 31931711 DOI: 10.1186/S12862-019-1546-5  0.84
2019 Sundaram M, Donoghue MJ, Farjon A, Filer D, Mathews S, Jetz W, Leslie AB. Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers. Proceedings. Biological Sciences. 286: 20191887. PMID 31594500 DOI: 10.1098/Rspb.2019.1887  0.6
2019 Spriggs EL, Schlutius C, Eaton DA, Park B, Sweeney PW, Edwards EJ, Donoghue MJ. Differences in flowering time maintain species boundaries in a continental radiation of Viburnum. American Journal of Botany. PMID 31124135 DOI: 10.1002/Ajb2.1292  1
2019 Donoghue MJ, Edwards EJ. Model clades are vital for comparative biology, and ascertainment bias is not a problem in practice: a response to Beaulieu and O'Meara (2018). American Journal of Botany. PMID 30882894 DOI: 10.1002/Ajb2.1255  1
2019 Park B, Donoghue MJ. Phylogeography of a widespread eastern North American shrub, Viburnum lantanoides. American Journal of Botany. PMID 30860611 DOI: 10.1002/ajb2.1248  0.48
2018 Spriggs EL, Eaton DAR, Sweeney PW, Schlutius C, Edwards EJ, Donoghue MJ. RAD-seq data reveal a cryptic Viburnum species on the North American Coastal Plain. Systematic Biology. PMID 30521050 DOI: 10.1093/Sysbio/Syy084  1
2018 Park B, Sinnott-Armstrong M, Schlutius C, Zuluaga JP, Spriggs EL, Simpson RG, Benavides E, Landis MJ, Sweeney PW, Eaton DAR, Donoghue MJ. Sterile marginal flowers increase visitation and fruit set in the hobblebush (Viburnum lantanoides, Adoxaceae) at multiple spatial scales. Annals of Botany. PMID 29982369 DOI: 10.1093/aob/mcy117  0.76
2018 Olson ME, Soriano D, Rosell JA, Anfodillo T, Donoghue MJ, Edwards EJ, León-Gómez C, Dawson T, Camarero Martínez JJ, Castorena M, Echeverría A, Espinosa CI, Fajardo A, Gazol A, Isnard S, et al. Plant height and hydraulic vulnerability to drought and cold. Proceedings of the National Academy of Sciences of the United States of America. PMID 29967148 DOI: 10.1073/Pnas.1721728115  1
2018 Federman S, Donoghue MJ, Daly DC, Eaton DAR. Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae). Plos One. 13: e0198882. PMID 29906281 DOI: 10.1371/journal.pone.0198882  0.44
2018 Spriggs EL, Schmerler SB, Edwards EJ, Donoghue MJ. Leaf Form Evolution in Viburnum Parallels Variation within Individual Plants. The American Naturalist. 191: 235-249. PMID 29351013 DOI: 10.1086/695337  1
2017 Edwards EJ, Chatelet DS, Chen BC, Ong JY, Tagane S, Kanemitsu H, Tagawa K, Teramoto K, Park B, Chung KF, Hu JM, Yahara T, Donoghue MJ. Convergence, Consilience, and the Evolution of Temperate Deciduous Forests. The American Naturalist. 190: S87-S104. PMID 28731827 DOI: 10.1086/692627  1
2017 Edwards EJ, Chatelet DS, Spriggs EL, Johnson ES, Schlutius C, Donoghue MJ. Correlation, causation, and the evolution of leaf teeth: A reply to Givnish and Kriebel. American Journal of Botany. PMID 28428198 DOI: 10.3732/Ajb.1700075  1
2017 Forrestel EJ, Donoghue MJ, Edwards EJ, Jetz W, du Toit JC, Smith MD. Different clades and traits yield similar grassland functional responses. Proceedings of the National Academy of Sciences of the United States of America. PMID 28074042 DOI: 10.1073/Pnas.1612909114  1
2016 Barish S, Arakaki M, Edwards EJ, Donoghue MJ, Clement WL. Characterization of 16 microsatellite markers for the Oreinotinus clade of Viburnum (Adoxaceae). Applications in Plant Sciences. 4. PMID 28101437 DOI: 10.3732/Apps.1600103  1
2016 Eaton DA, Spriggs EL, Park B, Donoghue MJ. Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants. Systematic Biology. PMID 27798402 DOI: 10.1093/sysbio/syw092  0.76
2016 Scoffoni C, Chatelet DS, Pasquet-Kok J, Rawls M, Donoghue MJ, Edwards EJ, Sack L. Hydraulic basis for the evolution of photosynthetic productivity. Nature Plants. 2: 16072. PMID 27255836 DOI: 10.1038/Nplants.2016.72  1
2016 Edwards EJ, Spriggs EL, Chatelet DS, Donoghue MJ. Unpacking a century-old mystery: Winter buds and the latitudinal gradient in leaf form. American Journal of Botany. PMID 27221280 DOI: 10.3732/Ajb.1600129  1
2016 Federman S, Dornburg A, Daly DC, Downie A, Perry GH, Yoder AD, Sargis EJ, Richard AF, Donoghue MJ, Baden AL. Implications of lemuriform extinctions for the Malagasy flora. Proceedings of the National Academy of Sciences of the United States of America. PMID 27071108 DOI: 10.1073/Pnas.1523825113  1
2015 Federman S, Dornburg A, Downie A, Richard AF, Daly DC, Donoghue MJ. The biogeographic origin of a radiation of trees in Madagascar: implications for the assembly of a tropical forest biome. Bmc Evolutionary Biology. 15: 216. PMID 26437959 DOI: 10.1186/S12862-015-0483-1  1
2015 Chen C, Lee GA, Pourmorady A, Sock E, Donoghue MJ. Orchestration of Neuronal Differentiation and Progenitor Pool Expansion in the Developing Cortex by SoxC Genes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 10629-42. PMID 26203155 DOI: 10.1523/Jneurosci.1663-15.2015  0.56
2015 Edwards EJ, de Vos JM, Donoghue MJ. Doubtful pathways to cold tolerance in plants. Nature. 521: E5-6. PMID 25993970 DOI: 10.1038/Nature14393  1
2015 Beaulieu JM, O'Meara BC, Crane P, Donoghue MJ. Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms. Systematic Biology. PMID 25944476 DOI: 10.1093/Sysbio/Syv027  1
2015 Leslie AB, Beaulieu JM, Crane PR, Knopf P, Donoghue MJ. Integration and macroevolutionary patterns in the pollination biology of conifers. Evolution; International Journal of Organic Evolution. 69: 1573-83. PMID 25903435 DOI: 10.1111/Evo.12670  1
2015 Donoghue MJ, Sanderson MJ. Confluence, synnovation, and depauperons in plant diversification. The New Phytologist. 207: 260-74. PMID 25778694 DOI: 10.1111/Nph.13367  1
2015 Spriggs EL, Clement WL, Sweeney PW, Madriñán S, Edwards EJ, Donoghue MJ. Temperate radiations and dying embers of a tropical past: the diversification of Viburnum. The New Phytologist. 207: 340-54. PMID 25644136 DOI: 10.1111/Nph.13305  1
2015 Forrestel EJ, Donoghue MJ, Smith MD. Functional differences between dominant grasses drive divergent responses to large herbivore loss in mesic savanna grasslands of North America and South Africa Journal of Ecology. 103: 714-724. DOI: 10.1111/1365-2745.12376  1
2014 Clement WL, Arakaki M, Sweeney PW, Edwards EJ, Donoghue MJ. A chloroplast tree for Viburnum (Adoxaceae) and its implications for phylogenetic classification and character evolution. American Journal of Botany. 101: 1029-1049. PMID 24928633 DOI: 10.3732/Ajb.1400015  1
2014 Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. Cone size is related to branching architecture in conifers. The New Phytologist. 203: 1119-27. PMID 24889934 DOI: 10.1111/Nph.12864  1
2014 Geeta R, Lohmann LG, Magallon S, Faith DP, Hendry A, Crandall K, De Meester L, Webb CO, Prieur-Richard AH, Mimura M, Conti E, Cracraft J, Forest F, Jaramillo C, Donoghue M, et al. Biodiversity only makes sense in the light of evolution. Journal of Biosciences. 39: 333-7. PMID 24845496 DOI: 10.1007/S12038-014-9427-Y  1
2014 Forrestel EJ, Donoghue MJ, Smith MD. Convergent phylogenetic and functional responses to altered fire regimes in mesic savanna grasslands of North America and South Africa. The New Phytologist. 203: 1000-11. PMID 24835304 DOI: 10.1111/Nph.12846  1
2014 Davis CC, Schaefer H, Xi Z, Baum DA, Donoghue MJ, Harmon LJ. Long-term morphological stasis maintained by a plant-pollinator mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 5914-9. PMID 24706921 DOI: 10.1073/Pnas.1403157111  1
2014 Donoghue MJ, Edwards EJ. Biome shifts and niche evolution in plants Annual Review of Ecology, Evolution, and Systematics. 45: 547-572. DOI: 10.1146/Annurev-Ecolsys-120213-091905  1
2014 Edwards EJ, Chatelet DS, Sack L, Donoghue MJ. Leaf life span and the leaf economic spectrum in the context of whole plant architecture Journal of Ecology. 102: 328-336. DOI: 10.1111/1365-2745.12209  1
2013 Beaulieu JM, Donoghue MJ. Fruit evolution and diversification in campanulid angiosperms. Evolution; International Journal of Organic Evolution. 67: 3132-44. PMID 24151998 DOI: 10.1111/evo.12180  1
2013 Díaz S, Purvis A, Cornelissen JH, Mace GM, Donoghue MJ, Ewers RM, Jordano P, Pearse WD. Functional traits, the phylogeny of function, and ecosystem service vulnerability. Ecology and Evolution. 3: 2958-75. PMID 24101986 DOI: 10.1002/Ece3.601  1
2013 Lehigh KM, Leonard CE, Baranoski J, Donoghue MJ. Parcellation of the thalamus into distinct nuclei reflects EphA expression and function. Gene Expression Patterns : Gep. 13: 454-63. PMID 24036135 DOI: 10.1016/J.Gep.2013.08.002  0.56
2013 Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. Explaining the distribution of breeding and dispersal syndromes in conifers. Proceedings. Biological Sciences / the Royal Society. 280: 20131812. PMID 24026822 DOI: 10.1098/Rspb.2013.1812  1
2013 Edwards EJ, Donoghue MJ. Is it easy to move and easy to evolve? Evolutionary accessibility and adaptation. Journal of Experimental Botany. 64: 4047-52. PMID 23913955 DOI: 10.1093/Jxb/Ert220  1
2013 Beaulieu JM, O'Meara BC, Donoghue MJ. Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. Systematic Biology. 62: 725-37. PMID 23676760 DOI: 10.1093/Sysbio/Syt034  1
2013 Beaulieu JM, Tank DC, Donoghue MJ. A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana. Bmc Evolutionary Biology. 13: 80. PMID 23565668 DOI: 10.1186/1471-2148-13-80  1
2013 Stournaras KE, Lo E, Böhning-Gaese K, Cazetta E, Dehling DM, Schleuning M, Stoddard MC, Donoghue MJ, Prum RO, Schaefer HM. How colorful are fruits? Limited color diversity in fleshy fruits on local and global scales. The New Phytologist. 198: 617-29. PMID 23374020 DOI: 10.1111/nph.12157  1
2013 North HA, Clifford MA, Donoghue MJ. 'Til Eph do us part': intercellular signaling via Eph receptors and ephrin ligands guides cerebral cortical development from birth through maturation. Cerebral Cortex (New York, N.Y. : 1991). 23: 1765-73. PMID 22744705 DOI: 10.1093/Cercor/Bhs183  0.56
2013 de Queiroz K, Donoghue MJ. Phylogenetic nomenclature, hierarchical information, and testability. Systematic Biology. 62: 167-74. PMID 22649180 DOI: 10.1093/sysbio/sys054  1
2013 Chatelet DS, Clement WL, Sack L, Donoghue MJ, Edwards EJ. The evolution of photosynthetic anatomy in Viburnum (Adoxaceae) International Journal of Plant Sciences. 174: 1277-1291. DOI: 10.1086/673241  1
2013 Donoghue MJ, Sanderson MJ. Complexity and Homology in Plants Homology: the Hierarchical Basis of Comparative Biology. 393-421. DOI: 10.1016/B978-0-08-057430-1.50018-4  1
2012 Leslie AB, Beaulieu JM, Rai HS, Crane PR, Donoghue MJ, Mathews S. Hemisphere-scale differences in conifer evolutionary dynamics. Proceedings of the National Academy of Sciences of the United States of America. 109: 16217-21. PMID 22988083 DOI: 10.1073/Pnas.1213621109  1
2012 Weber MG, Clement WL, Donoghue MJ, Agrawal AA. Phylogenetic and experimental tests of interactions among mutualistic plant defense traits in Viburnum (adoxaceae). The American Naturalist. 180: 450-63. PMID 22976009 DOI: 10.1086/667584  1
2012 Schmerler SB, Clement WL, Beaulieu JM, Chatelet DS, Sack L, Donoghue MJ, Edwards EJ. Evolution of leaf form correlates with tropical-temperate transitions in Viburnum (Adoxaceae). Proceedings. Biological Sciences / the Royal Society. 279: 3905-13. PMID 22810426 DOI: 10.1098/Rspb.2012.1110  1
2012 Selvamani M, Donoghue M, Basandi PS. Analysis of 153 cases of odontogenic cysts in a South Indian sample population: a retrospective study over a decade. Brazilian Oral Research. 26: 330-4. PMID 22714930 DOI: 10.1590/S1806-83242012005000007  0.04
2012 Clement WL, Donoghue MJ. Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms. Bmc Evolutionary Biology. 12: 73. PMID 22646220 DOI: 10.1186/1471-2148-12-73  1
2012 Lo EY, Donoghue MJ. Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae). Molecular Phylogenetics and Evolution. 63: 230-43. PMID 22293154 DOI: 10.1016/j.ympev.2011.10.005  1
2012 Beaulieu JM, Ree RH, Cavender-Bares J, Weiblen GD, Donoghue MJ. Synthesizing phylogenetic knowledge for ecological research Ecology. 93: S4-S13. DOI: 10.1890/11-0638.1  1
2012 Carlson SE, Linder HP, Donoghue MJ. The historical biogeography of Scabiosa (Dipsacaceae): Implications for Old World plant disjunctions Journal of Biogeography. 39: 1086-1100. DOI: 10.1111/J.1365-2699.2011.02669.X  1
2012 Boyden GS, Donoghue MJ, Howarth DG. Duplications and expression of radialis-like genes in dipsacales International Journal of Plant Sciences. 173: 971-983. DOI: 10.1086/667626  1
2012 Wheeler QD, Knapp S, Stevenson DW, Stevenson J, Blum SD, Boom BM, Borisy GG, Buizer JL, De Carvalho MR, Cibrian A, Donoghue MJ, Doyle V, Gerson EM, Graham CH, Graves P, et al. Mapping the biosphere: Exploring species to understand the origin, organization and sustainability of biodiversity Systematics and Biodiversity. 10: 1-20. DOI: 10.1080/14772000.2012.665095  1
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Donoghue MJ, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  1
2011 Carlson SE, Howarth DG, Donoghue MJ. Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences. Bmc Evolutionary Biology. 11: 325. PMID 22054400 DOI: 10.1186/1471-2148-11-325  1
2011 de Queiroz K, Donoghue MJ. Phylogenetic nomenclature, three-taxon statements, and unnecessary name changes. Systematic Biology. 60: 887-92. PMID 21865335 DOI: 10.1093/sysbio/syr070  1
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, ... ... Donoghue MJ, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  1
2011 Smith SA, Beaulieu JM, Stamatakis A, Donoghue MJ. Understanding angiosperm diversification using small and large phylogenetic trees. American Journal of Botany. 98: 404-14. PMID 21613134 DOI: 10.3732/Ajb.1000481  1
2011 Clifford MA, Kanwal JK, Dzakpasu R, Donoghue MJ. EphA4 expression promotes network activity and spine maturation in cortical neuronal cultures. Neural Development. 6: 21. PMID 21542907 DOI: 10.1186/1749-8104-6-21  0.56
2011 Donoghue MJ. Bipolar biogeography. Proceedings of the National Academy of Sciences of the United States of America. 108: 6341-2. PMID 21490300 DOI: 10.1073/pnas.1103801108  1
2011 Desurmont GA, Donoghue MJ, Clement WL, Agrawal AA. Evolutionary history predicts plant defense against an invasive pest. Proceedings of the National Academy of Sciences of the United States of America. 108: 7070-4. PMID 21482779 DOI: 10.1073/Pnas.1102891108  1
2011 Howarth DG, Martins T, Chimney E, Donoghue MJ. Diversification of CYCLOIDEA expression in the evolution of bilateral flower symmetry in Caprifoliaceae and Lonicera (Dipsacales). Annals of Botany. 107: 1521-32. PMID 21478175 DOI: 10.1093/Aob/Mcr049  1
2011 Evans ME, Hearn DJ, Theiss KE, Cranston K, Holsinger KE, Donoghue MJ. Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera). The New Phytologist. 191: 555-63. PMID 21449951 DOI: 10.1111/J.1469-8137.2011.03697.X  1
2011 Clement WL, Donoghue MJ. Dissolution of Viburnum section Megalotinus (Adoxaceae) of Southeast Asia and its implications for morphological evolution and biogeography International Journal of Plant Sciences. 172: 559-573. DOI: 10.1086/658927  1
2011 Greenberg AK, Donoghue MJ. Molecular systematics and character evolution in caryophyllaceae Taxon. 60: 1637-1652. DOI: 10.1002/Tax.606009  1
2010 Smith SA, Donoghue MJ. Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). Systematic Biology. 59: 322-41. PMID 20525639 DOI: 10.1093/Sysbio/Syq011  1
2010 Smith SA, Beaulieu JM, Donoghue MJ. An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants. Proceedings of the National Academy of Sciences of the United States of America. 107: 5897-902. PMID 20304790 DOI: 10.1073/Pnas.1001225107  1
2010 Hendry AP, Lohmann LG, Conti E, Cracraft J, Crandall KA, Faith DP, Häuser C, Joly CA, Kogure K, Larigauderie A, Magallón S, Moritz C, Tillier S, Zardoya R, Prieur-Richard AH, ... ... Donoghue MJ, et al. Evolutionary biology in biodiversity science, conservation, and policy: a call to action. Evolution; International Journal of Organic Evolution. 64: 1517-28. PMID 20067518 DOI: 10.1111/J.1558-5646.2010.00947.X  1
2010 North HA, Karim A, Jacquin MF, Donoghue MJ. EphA4 is necessary for spatially selective peripheral somatosensory topography. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 239: 630-8. PMID 20014408 DOI: 10.1002/dvdy.22185  0.56
2010 Tank DC, Donoghue MJ. Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa Systematic Botany. 35: 425-441. DOI: 10.1600/036364410791638306  1
2010 Faith DP, Magallón S, Hendry AP, Conti E, Yahara T, Donoghue MJ. Evosystem services: An evolutionary perspective on the links between biodiversity and human well-being Current Opinion in Environmental Sustainability. 2: 66-74. DOI: 10.1016/J.Cosust.2010.04.002  1
2010 Yahara T, Donoghue M, Zardoya R, Faith DP, Cracraft J. Genetic diversity assessments in the century of genome science Current Opinion in Environmental Sustainability. 2: 43-49. DOI: 10.1016/J.Cosust.2010.03.008  1
2009 North HA, Zhao X, Kolk SM, Clifford MA, Ziskind DM, Donoghue MJ. Promotion of proliferation in the developing cerebral cortex by EphA4 forward signaling. Development (Cambridge, England). 136: 2467-76. PMID 19542359 DOI: 10.1242/Dev.034405  0.56
2009 Howarth DG, Donoghue MJ. Duplications and expression of DIVARICATA-like genes in dipsacales. Molecular Biology and Evolution. 26: 1245-58. PMID 19289599 DOI: 10.1093/Molbev/Msp051  1
2009 Moore BR, Donoghue MJ. A Bayesian approach for evaluating the impact of historical events on rates of diversification. Proceedings of the National Academy of Sciences of the United States of America. 106: 4307-12. PMID 19251663 DOI: 10.1073/Pnas.0807230106  1
2009 Smith SA, Beaulieu JM, Donoghue MJ. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches. Bmc Evolutionary Biology. 9: 37. PMID 19210768 DOI: 10.1186/1471-2148-9-37  1
2009 Evans ME, Smith SA, Flynn RS, Donoghue MJ. Climate, niche evolution, and diversification of the "bird-cage" evening primroses (Oenothera, sections Anogra and Kleinia). The American Naturalist. 173: 225-40. PMID 19072708 DOI: 10.1086/595757  1
2009 Cellinese N, Smith SA, Edwards EJ, Kim ST, Haberle RC, Avramakis M, Donoghue MJ. Historical biogeography of the endemic Campanulaceae of Crete Journal of Biogeography. 36: 1253-1269. DOI: 10.1111/J.1365-2699.2008.02077.X  1
2009 Carlson SE, Mayer V, Donoghue MJ. Phylogenetic relationships, taxonomy, and morphological evolution in Dipsacaceae (Dipsacales) inferred by DNA sequence data Taxon. 58: 1075-1091. DOI: 10.1002/Tax.584003  1
2008 Kim ST, Donoghue MJ. Incongruence between cpDNA and nrITS trees indicates extensive hybridization within Eupersicaria (Polygonaceae). American Journal of Botany. 95: 1122-35. PMID 21632431 DOI: 10.3732/Ajb.0700008  1
2008 Smith SA, Donoghue MJ. Rates of molecular evolution are linked to life history in flowering plants. Science (New York, N.Y.). 322: 86-9. PMID 18832643 DOI: 10.1126/Science.1163197  1
2008 Smith SA, Tank DC, Boulanger LA, Bascom-Slack CA, Eisenman K, Kingery D, Babbs B, Fenn K, Greene JS, Hann BD, Keehner J, Kelley-Swift EG, Kembaiyan V, Lee SJ, Li P, ... ... Donoghue MJ, et al. Bioactive endophytes warrant intensified exploration and conservation. Plos One. 3: e3052. PMID 18725962 DOI: 10.1371/Journal.Pone.0003052  1
2008 Kim ST, Sultan SE, Donoghue MJ. Allopolyploid speciation in Persicaria (Polygonaceae): insights from a low-copy nuclear region. Proceedings of the National Academy of Sciences of the United States of America. 105: 12370-5. PMID 18711129 DOI: 10.1073/Pnas.0805141105  1
2008 Donoghue MJ. Colloquium paper: a phylogenetic perspective on the distribution of plant diversity. Proceedings of the National Academy of Sciences of the United States of America. 105: 11549-55. PMID 18695216 DOI: 10.1073/pnas.0801962105  1
2008 Winkworth RC, Bell CD, Donoghue MJ. Mitochondrial sequence data and Dipsacales phylogeny: mixed models, partitioned Bayesian analyses, and model selection. Molecular Phylogenetics and Evolution. 46: 830-43. PMID 18255318 DOI: 10.1016/j.ympev.2007.11.021  1
2008 Theis N, Donoghue MJ, Li J. Phylogenetics of the Caprifolieae and Lonicera (Dipsacales) based on nuclear and chloroplast DNA sequences Systematic Botany. 33: 776-783. DOI: 10.1600/036364408786500163  1
2008 Havill NP, Campbell CS, Vining TF, LePage B, Bayer RJ, Donoghue MJ. Phylogeny and biogeography of Tsuga (Pinaceae) inferred from nuclear ribosomal ITS and chloroplast DNA sequence data Systematic Botany. 33: 478-489. DOI: 10.1600/036364408785679770  1
2008 Kim ST, Donoghue MJ. Molecular phylogeny of Persicaria (Persicarieae, Polygonaceae) Systematic Botany. 33: 77-86. DOI: 10.1600/036364408783887302  1
2008 Jacobs B, Donoghue MJ, Bouman F, Huysmans S, Smets E. Evolution and phylogenetic importance of endocarp and seed characters in Viburnum (Adoxaceae) International Journal of Plant Sciences. 169: 409-431. DOI: 10.1086/526468  1
2007 Moore BR, Donoghue MJ. Correlates of diversification in the plant clade Dipsacales: geographic movement and evolutionary innovations. The American Naturalist. 170: S28-55. PMID 17874383 DOI: 10.1086/519460  1
2007 Edwards EJ, Still CJ, Donoghue MJ. The relevance of phylogeny to studies of global change. Trends in Ecology & Evolution. 22: 243-9. PMID 17296242 DOI: 10.1016/J.Tree.2007.02.002  1
2007 Cantino PD, Doyle JA, Graham SW, Judd WS, Olmstead RG, Soltis DE, Soltis PS, Donoghue MJ. Towards a phylogenetic nomenclature of Tracheophyta Taxon. 56: 822-846. DOI: 10.2307/25065864  1
2006 Moore BR, Smith SA, Donoghue MJ. Increasing data transparency and estimating phylogenetic uncertainty in supertrees: Approaches using nonparametric bootstrapping. Systematic Biology. 55: 662-76. PMID 16969942 DOI: 10.1080/10635150600920693  1
2006 Webb CO, Gilbert GS, Donoghue MJ. Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest. Ecology. 87: S123-31. PMID 16922308 DOI: 10.1890/0012-9658(2006)87[123:Psmssa]2.0.Co;2  1
2006 Kolk SM, Whitman MC, Yun ME, Shete P, Donoghue MJ. A unique subpopulation of Tbr1-expressing deep layer neurons in the developing cerebral cortex. Molecular and Cellular Neurosciences. 32: 200-14. PMID 16858776 DOI: 10.1016/j.mcn.2005.08.022  0.56
2006 Loreau M, Oteng-Yeboah A, Arroyo MT, Babin D, Barbault R, Donoghue M, Gadgil M, Häuser C, Heip C, Larigauderie A, Ma K, Mace G, Mooney HA, Perrings C, Raven P, et al. Diversity without representation. Nature. 442: 245-6. PMID 16855567 DOI: 10.1038/442245A  1
2006 Howarth DG, Donoghue MJ. Phylogenetic analysis of the "ECE" (CYC/TB1) clade reveals duplications predating the core eudicots. Proceedings of the National Academy of Sciences of the United States of America. 103: 9101-6. PMID 16754863 DOI: 10.1073/Pnas.0602827103  1
2006 Edwards EJ, Donoghue MJ. Pereskia and the origin of the cactus life-form. The American Naturalist. 167: 777-93. PMID 16649155 DOI: 10.1086/504605  1
2006 Miller K, Kolk SM, Donoghue MJ. EphA7-ephrin-A5 signaling in mouse somatosensory cortex: developmental restriction of molecular domains and postnatal maintenance of functional compartments. The Journal of Comparative Neurology. 496: 627-42. PMID 16615124 DOI: 10.1002/cne.20926  0.56
2005 Winkworth RC, Donoghue MJ. Viburnum phylogeny based on combined molecular data: implications for taxonomy and biogeography. American Journal of Botany. 92: 653-66. PMID 21652443 DOI: 10.3732/ajb.92.4.653  0.64
2005 Bell CD, Donoghue MJ. Dating the Dipsacales: comparing models, genes, and evolutionary implications. American Journal of Botany. 92: 284-96. PMID 21652406 DOI: 10.3732/ajb.92.2.284  1
2005 Edwards EJ, Nyffeler R, Donoghue MJ. Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form. American Journal of Botany. 92: 1177-88. PMID 21646140 DOI: 10.3732/Ajb.92.7.1177  1
2005 Ree RH, Moore BR, Webb CO, Donoghue MJ. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution; International Journal of Organic Evolution. 59: 2299-311. PMID 16396171 DOI: 10.1111/J.0014-3820.2005.Tb00940.X  1
2005 Kolk SM, Whitman MC, Yun ME, Shete P, Donoghue MJ. A unique subpopulation of Tbr1-expressing deep layer neurons in the developing cerebral cortex. Molecular and Cellular Neurosciences. 30: 538-51. PMID 16188453 DOI: 10.1016/J.Mcn.2005.08.017  0.56
2005 Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ. Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests. The American Naturalist. 165: E36-65. PMID 15729659 DOI: 10.1086/428296  1
2005 Donoghue MJ. Key innovations, convergence, and success: Macroevolutionary lessons from plant phylogeny Paleobiology. 31: 77-93. DOI: 10.1666/0094-8373(2005)031[0077:KICASM]2.0.CO;2  1
2005 Clark LG, Donoghue MJ. John H. Beaman - Recipient of the 2004 Asa Gray Award Systematic Botany. 30: 1-6. DOI: 10.1600/0363644053661968  1
2005 Webb CO, Donoghue MJ. Phylomatic: Tree assembly for applied phylogenetics Molecular Ecology Notes. 5: 181-183. DOI: 10.1111/j.1471-8286.2004.00829.x  1
2005 Howarth DG, Donoghue MJ. Duplications in CYC-like genes from dipsacales correlate with floral form International Journal of Plant Sciences. 166: 357-370. DOI: 10.1086/428634  1
2005 Bell CD, Donoghue MJ. Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians Organisms Diversity and Evolution. 5: 147-159. DOI: 10.1016/j.ode.2004.10.014  1
2004 Wiens JJ, Donoghue MJ. Historical biogeography, ecology and species richness. Trends in Ecology & Evolution. 19: 639-44. PMID 16701326 DOI: 10.1016/J.Tree.2004.09.011  1
2004 Donoghue MJ, Gauthier JA. Implementing the PhyloCode. Trends in Ecology & Evolution. 19: 281-2. PMID 16701272 DOI: 10.1016/J.Tree.2004.04.004  1
2004 Donoghue MJ, Smith SA. Patterns in the assembly of temperate forests around the Northern Hemisphere. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 1633-44. PMID 15519978 DOI: 10.1098/Rstb.2004.1538  1
2004 Winkworth RC, Donoghue MJ. Viburnum phylogeny: evidence from the duplicated nuclear gene GBSSI. Molecular Phylogenetics and Evolution. 33: 109-26. PMID 15324842 DOI: 10.1016/j.ympev.2004.05.006  1
2004 Feild TS, Arens NC, Doyle JA, Dawson TE, Donoghue MJ. Dark and disturbed: A new image of early angiosperm ecology Paleobiology. 30: 82-107. DOI: 10.1666/0094-8373(2004)030<0082:Dadani>2.0.Co;2  1
2004 Schultheis LM, Donoghue MJ. Molecular Phylogeny and Biogeography of Ribes (Grossulariaceae), with an Emphasis on Gooseberries (subg. Grossularia) Systematic Botany. 29: 77-96. DOI: 10.1600/036364404772974239  1
2004 Donoghue MJ, Baldwin BG, Li J, Winkworth RC. Viburnum Phylogeny Based on Chloroplast trnK Intron and Nuclear Ribosomal ITS DNA Sequences Systematic Botany. 29: 188-198. DOI: 10.1600/036364404772974095  1
2003 Donoghue MJ, Moore BR. Toward an integrative historical biogeography. Integrative and Comparative Biology. 43: 261-70. PMID 21680431 DOI: 10.1093/Icb/43.2.261  1
2003 Piel WH, Sanderson MJ, Donoghue MJ. The small-world dynamics of tree networks and data mining in phyloinformatics. Bioinformatics (Oxford, England). 19: 1162-8. PMID 12801879 DOI: 10.1093/Bioinformatics/Btg131  1
2003 Mathews S, Burleigh JG, Donoghue MJ. Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms. Molecular Biology and Evolution. 20: 1087-97. PMID 12777523 DOI: 10.1093/Molbev/Msg123  1
2003 Yun ME, Johnson RR, Antic A, Donoghue MJ. EphA family gene expression in the developing mouse neocortex: regional patterns reveal intrinsic programs and extrinsic influence. The Journal of Comparative Neurology. 456: 203-16. PMID 12528186 DOI: 10.1002/cne.10498  0.56
2003 Nakhleh L, Miranker D, Barbancon F, Piel WH, Donoghue M. Requirements of phylogenetic databases Proceedings - 3rd Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2003. 141-148. DOI: 10.1109/BIBE.2003.1188940  1
2003 Eriksson T, Hibbs MS, Yoder AD, Delwiche CF, Donoghue MJ. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA International Journal of Plant Sciences. 164: 197-211. DOI: 10.1086/346163  1
2003 Bell CD, Donoghue MJ. Phylogeny and biogeography of Morinaceae (Dipsacales) based on nuclear and chloroplast DNA sequences Organisms Diversity and Evolution. 3: 227-237. DOI: 10.1078/1439-6092-00077  1
2003 Donoghue MJ, Bell CD, Winkworth RC. The evolution of reproductive characters in Dipsacales International Journal of Plant Sciences. 164: S453-S464.  1
2002 Chang BS, Jönsson K, Kazmi MA, Donoghue MJ, Sakmar TP. Recreating a functional ancestral archosaur visual pigment. Molecular Biology and Evolution. 19: 1483-9. PMID 12200476 DOI: 10.1093/Oxfordjournals.Molbev.A004211  1
2002 Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ. The root of the angiosperms revisited. Proceedings of the National Academy of Sciences of the United States of America. 99: 6848-53. PMID 12011443 DOI: 10.1073/Pnas.092136399  1
2002 Davis CC, Bell CD, Mathews S, Donoghue MJ. Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae. Proceedings of the National Academy of Sciences of the United States of America. 99: 6833-7. PMID 11983870 DOI: 10.1073/Pnas.102175899  1
2002 Ogunshola OO, Antic A, Donoghue MJ, Fan SY, Kim H, Stewart WB, Madri JA, Ment LR. Paracrine and autocrine functions of neuronal vascular endothelial growth factor (VEGF) in the central nervous system. The Journal of Biological Chemistry. 277: 11410-5. PMID 11777931 DOI: 10.1074/Jbc.M111085200  0.56
2002 Webb CO, Ackerly DD, McPeek MA, Donoghue MJ. Phylogenies and community ecology Annual Review of Ecology and Systematics. 33: 475-505. DOI: 10.1146/annurev.ecolsys.33.010802.150448  1
2001 Davis CC, Anderson WR, Donoghue MJ. Phylogeny of Malpighiaceae: evidence from chloroplast ndhF and trnl-F nucleotide sequences. American Journal of Botany. 88: 1830-46. PMID 21669617 DOI: 10.2307/3558360  1
2001 Hibbett DS, Donoghue MJ. Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Systematic Biology. 50: 215-42. PMID 12116929 DOI: 10.1080/10635150121079  1
2001 Donoghue MJ. A wish list for systematic biology. Systematic Biology. 50: 755-7. PMID 12116632 DOI: 10.1080/106351501753462795  1
2001 Manos PS, Donoghue MJ. Progress in Northern Hemisphere phytogeography: An introduction International Journal of Plant Sciences. 162: S1-S2. DOI: 10.1086/324421  1
2001 Donoghue MJ, Bell CD, Li J. Phylogenetic patterns in Northern Hemisphere plant geography International Journal of Plant Sciences. 162: S41-S52.  1
2000 Hibbett DS, Gilbert LB, Donoghue MJ. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature. 407: 506-8. PMID 11029000 DOI: 10.1038/35035065  1
2000 Donoghue MJ, Doyle JA. Seed plant phylogeny: Demise of the anthophyte hypothesis? Current Biology : Cb. 10: R106-9. PMID 10679315 DOI: 10.1016/S0960-9822(00)00304-3  1
2000 Chang BS, Donoghue MJ. Recreating ancestral proteins. Trends in Ecology & Evolution. 15: 109-114. PMID 10675926  0.96
2000 Weiblen GD, Oyama RK, Donoghue MJ. Phylogenetic Analysis of Dioecy in Monocotyledons. The American Naturalist. 155: 46-58. PMID 10657176 DOI: 10.1086/303303  1
2000 Urbatsch LE, Baldwin BG, Donoghue MJ. Phylogeny of the coneflowers and relatives (Heliantheae: Asteraceae) based on nuclear rDNA internal transcribed spacer (ITS) sequences and chlorplast DNA restriction site data Systematic Botany. 25: 539-565. DOI: 10.2307/2666695  1
2000 Robeck HE, Maley CC, Donoghue MJ. Taxonomy and temporal diversity patterns Paleobiology. 26: 171-187. DOI: 10.1666/0094-8373(2000)026<0171:Tatdp>2.0.Co;2  1
1999 Cantino PD, Bryant HN, de Queiroz K, Donoghue MJ, Eriksson T, Hillis DM, Lee MS. Species names in phylogenetic nomenclature. Systematic Biology. 48: 790-807. PMID 12066299 DOI: 10.1080/106351599260012  1
1999 Mathews S, Donoghue MJ. The root of angiosperm phylogeny inferred from duplicate phytochrome genes Science. 286: 947-950. PMID 10542147 DOI: 10.1126/Science.286.5441.947  1
1999 Donoghue MJ, Rakic P. Molecular gradients and compartments in the embryonic primate cerebral cortex. Cerebral Cortex (New York, N.Y. : 1991). 9: 586-600. PMID 10498277 DOI: 10.1093/cercor/9.6.586  0.56
1999 Donoghue MJ, Rakic P. Molecular evidence for the early specification of presumptive functional domains in the embryonic primate cerebral cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 5967-79. PMID 10407035 DOI: 10.1523/Jneurosci.19-14-05967.1999  0.56
1999 Ree RH, Donoghue MJ. Inferring rates of change in flower symmetry in asterid angiosperms Systematic Biology. 48: 633-641. DOI: 10.1080/106351599260201  1
1999 Pine EM, Hibbett DS, Donoghue MJ. Phylogenetic relationships of cantharelloid and clavarioid homobasidiomycetes based on mitochondrial and nuclear rDNA sequences Mycologia. 91: 944-963. DOI: 10.1080/00275514.1999.12061105  1
1999 Harrington FA, Pfister DH, Potter D, Donoghue MJ. Phylogenetic studies within the Pezizales. I. 18S rRNA sequence data and classification Mycologia. 91: 41-50. DOI: 10.1080/00275514.1999.12060992  1
1998 Ackerly DD, Donoghue MJ. Leaf size, sapling allometry, and Corner's rules: phylogeny and correlated evolution in maples (Acer). The American Naturalist. 152: 767-91. PMID 18811427 DOI: 10.1086/286208  1
1998 Ree RH, Donoghue MJ. Step matrices and the interpretation of homoplasy. Systematic Biology. 47: 582-8. PMID 12066303 DOI: 10.1080/106351598260590  1
1998 Feild TS, Zwieniecki MA, Donoghue MJ, Holbrook NM. Stomatal plugs of Drimys winteri (Winteraceae) protect leaves from mist but not drought. Proceedings of the National Academy of Sciences of the United States of America. 95: 14256-9. PMID 9826687 DOI: 10.1073/Pnas.95.24.14256  1
1998 Donoghue MJ, Mathews S. Duplicate Genes and the Root of Angiosperms, with an Example Using Phytochrome Sequences Molecular Phylogenetics and Evolution. 9: 489-500. PMID 9667997 DOI: 10.1006/Mpev.1998.0511  1
1998 Hibbett DS, Donoghue MJ. Integrating phylogenetic analysis and classification in fungi Mycologia. 90: 347-356. DOI: 10.1080/00275514.1998.12026917  1
1998 Hibbett DS, Hansen K, Donoghue MJ. Phylogeny and biogeography of Lentinula inferred from an expanded rDNA dataset Mycological Research. 102: 1041-1049. DOI: 10.1017/S0953756297005996  1
1998 Donoghue MJ, Ree RH, Baum DA. Phylogeny and the evolution of flower symmetry in the asteridae Trends in Plant Science. 3: 311-317. DOI: 10.1016/S1360-1385(98)01278-3  1
1997 Rice KA, Donoghue MJ, Olmstead RG. Analyzing large data sets: rbcL 500 revisited. Systematic Biology. 46: 554-63. PMID 11975333  1
1997 Hibbett DS, Pine EM, Langer E, Langer G, Donoghue MJ. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 94: 12002-6. PMID 9342352 DOI: 10.1073/Pnas.94.22.12002  1
1997 Sang T, Donoghue MJ, Zhang D. Evolution of alcohol dehydrogenase genes in peonies (Paeonia): Phylogenetic relationships of putative nonhybrid species Molecular Biology and Evolution. 14: 994-1007. PMID 9335140 DOI: 10.1093/oxfordjournals.molbev.a025716  1
1997 Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Molecular Biology and Evolution. 14: 81-90. PMID 9000756 DOI: 10.1093/Oxfordjournals.Molbev.A025705  1
1997 Hibbett DS, Donoghue MJ, Tomlinson PB. Is Phellinites digiustoi the oldest homobasidiomycete? American Journal of Botany. 84: 1005-1011. DOI: 10.2307/2446291  1
1997 Hibbett DS, Grimaldi D, Donoghue MJ. Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of homobasidiomycetes American Journal of Botany. 84: 981-991. DOI: 10.2307/2446289  1
1996 Sanderson MJ, Donoghue MJ. Reconstructing shifts in diversification rates on phylogenetic trees. Trends in Ecology & Evolution. 11: 15-20. PMID 21237745 DOI: 10.1016/0169-5347(96)81059-7  1
1996 Hibbett DS, Donoghue MJ. Implications of phylogenetic studies for conservation of genetic diversity in shiitake mushrooms | Implicaciones de estudios filogeneticos en la conservacion de la diversidad genetica de hongos shiitake Conservation Biology. 10: 1321-1327. DOI: 10.1046/J.1523-1739.1996.10051321.X  1
1995 Manchester SR, Donoghue MJ. Winged fruits of Linnaeeae (Caprifoliaceae) in the Tertiary of western North America: Diplodipelta gen. nov International Journal of Plant Sciences. 156: 709-722. DOI: 10.1086/297293  1
1995 Campbell CS, Donoghue MJ, Baldwin BG, Wojciechowski MF. Phylogenetic relationships in Maloideae (Rosaceae): Evidence from sequences of the internal transcribed spacers of nuclear ribosomal DNA and its congruence with morphology American Journal of Botany. 82: 903-918. DOI: 10.1002/J.1537-2197.1995.Tb15707.X  1
1994 Sanderson MJ, Donoghue MJ. Shifts in diversification rate with the origin of angiosperms. Science (New York, N.Y.). 264: 1590-3. PMID 17769604 DOI: 10.1126/Science.264.5165.1590  1
1994 Doyle JA, Donoghue MJ, Zimmer EA. Integration of morphological and ribosomal RNA data on the origin of angiosperms Annals of the Missouri Botanical Garden. 81: 419-450. DOI: 10.2307/2399899  1
1994 Blake JA, Bult CJ, Donoghue MJ, Humphries J, Fields C. Interoperability of biological data bases: A Meeting Report Systematic Biology. 43: 585-589. DOI: 10.1093/sysbio/43.4.585  1
1993 Sanderson MJ, Baldwin BG, Bharathan G, Campbell CS, Von Dohlen C, Ferguson D, Porter JM, Wojciechowski MF, Donoghue MJ. The growth of phylogenetic information and the need for a phylogenetic data base Systematic Biology. 42: 562-568. DOI: 10.1093/Sysbio/42.4.562  1
1993 Doyle JA, Donoghue MJ. Phylogenies and angiosperm diversification Paleobiology. 19: 141-167. DOI: 10.1017/S0094837300015840  1
1992 Doyle JA, Donoghue MJ. Fossils and seed plant phylogeny reanalyzed Brittonia. 44: 89-106. DOI: 10.2307/2806826  1
1991 Donoghue MJ, Doyle JA. Angiosperm monophyly. Trends in Ecology & Evolution. 6: 407. PMID 21232523 DOI: 10.1016/0169-5347(91)90164-S  1
1991 Wentworth BM, Donoghue M, Engert JC, Berglund EB, Rosenthal N. Paired MyoD-binding sites regulate myosin light chain gene expression Proceedings of the National Academy of Sciences of the United States of America. 88: 1242-1246. PMID 1847512 DOI: 10.1073/Pnas.88.4.1242  0.56
1990 Rosenthal N, Berglund EB, Wentworth BM, Donoghue M, Winter B, Bober E, Braun T, Arnold HH. A highly conserved enhancer downstream of the human MLC1/3 locus is a target for multiple myogenic determination factors Nucleic Acids Research. 18: 6239-6246. PMID 2243772 DOI: 10.1093/Nar/18.21.6239  0.56
1989 Sanderson MJ, Donoghue MJ. PATTERNS OF VARIATION IN LEVELS OF HOMOPLASY. Evolution; International Journal of Organic Evolution. 43: 1781-1795. PMID 28564338 DOI: 10.1111/J.1558-5646.1989.Tb02626.X  1
1989 Rosenthal N, Kornhauser JM, Donoghue M, Rosen KM, Merlie JP. Myosin light chain enhancer activates muscle-specific, developmentally regulated gene expression in transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 86: 7780-4. PMID 2813357 DOI: 10.1073/Pnas.86.20.7780  0.56
1989 Donoghue MJ, Doyle JA, Gauthier J, Kluge AG, Rowe T. The importance of fossils in phylogeny reconstruction Annual Review of Ecology and Systematics. Vol. 20. 431-460. DOI: 10.1146/Annurev.Es.20.110189.002243  1
1988 Donoghue M, Ernst H, Wentworth B, Nadal-Ginard B, Rosenthal N. A muscle-specific enhancer is located at the 3' end of the myosin light-chain 1/3 gene locus Genes &Amp; Development. 2: 1779-1790. PMID 3240859 DOI: 10.1101/Gad.2.12B.1779  0.56
1988 Donoghue MJ, Cantino PD. Paraphyly, ancestors, and the goals of taxonomy: A botanical defense of cladism The Botanical Review. 54: 107-128. DOI: 10.1007/BF02858525  1
1987 Doyle JA, Donoghue MJ. The importance of fossils in elucidating seed plant phylogeny and macroevolution Review of Palaeobotany and Palynology. 50: 63-95. DOI: 10.1016/0034-6667(87)90040-6  1
1986 Doyle JA, Donoghue MJ. Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach The Botanical Review. 52: 321-431. DOI: 10.1007/Bf02861082  1
1984 Maddison WP, Donoghue MJ, Maddison DR. Outgroup analysis and parsimony Systematic Biology. 33: 83-103. DOI: 10.1093/Sysbio/33.1.83  1
1982 Mishler BD, Donoghue MJ. Species Concepts: A Case for Pluralism Systematic Biology. 31: 491-503. DOI: 10.1093/sysbio/31.4.491  1
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