Richard H. Baker, Ph.D. - Publications

American Museum of Natural History, New York, NY, United States 
molecular phylogenetics, evolutionary genomics, stalk-eyed flies

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gatesy J, Sloan DB, Warren JM, Baker RH, Simmons MP, Springer MS. Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts. Molecular Phylogenetics and Evolution. 106539. PMID 31226465 DOI: 10.1016/j.ympev.2019.106539  1
2016 Narechania A, Baker R, DeSalle R, Mathema B, Kolokotronis SO, Kreiswirth B, Planet PJ. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets. Gigascience. 5: 44. PMID 27776538 DOI: 10.1186/s13742-016-0152-3  1
2016 Kolokotronis SO, Foox J, Rosenfeld JA, Brugler MR, Reeves D, Benoit JB, Booth W, Robison G, Steffen M, Sakas Z, Palli SR, Schal C, Richards S, Narechania A, Baker RH, et al. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial Dna. Part B, Resources. 1: 425-427. PMID 27617305 DOI: 10.1080/23802359.2016.1180268  1
2016 Baker RH, Narechania A, DeSalle R, Johns PM, Reinhardt JA, Wilkinson GS. Spermatogenesis drives rapid gene creation and masculinization of the X chromosome in stalk-eyed flies (Diopsidae). Genome Biology and Evolution. PMID 26951781 DOI: 10.1093/gbe/evw043  1
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... Baker R, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/ncomms10164  1
2015 Oppenheim SJ, Baker RH, Simon S, DeSalle R. We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects. Insect Molecular Biology. 24: 139-54. PMID 25524309 DOI: 10.1111/imb.12154  1
2014 Reinhardt JA, Brand CL, Paczolt KA, Johns PM, Baker RH, Wilkinson GS. Meiotic drive impacts expression and evolution of x-linked genes in stalk-eyed flies. Plos Genetics. 10: e1004362. PMID 24832132 DOI: 10.1371/journal.pgen.1004362  1
2013 Wilkinson GS, Johns PM, Metheny JD, Baker RH. Sex-biased gene expression during head development in a sexually dimorphic stalk-eyed fly. Plos One. 8: e59826. PMID 23527273 DOI: 10.1371/journal.pone.0059826  1
2013 Husak JF, Ribak G, Baker RH, Rivera G, Wilkinson GS, Swallow JG. Effects of ornamentation and phylogeny on the evolution of wing shape in stalk-eyed flies (Diopsidae). Journal of Evolutionary Biology. 26: 1281-93. PMID 23458151 DOI: 10.1111/jeb.12133  1
2012 Baker RH, Narechania A, Johns PM, Wilkinson GS. Gene duplication, tissue-specific gene expression and sexual conflict in stalk-eyed flies (Diopsidae). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2357-75. PMID 22777023 DOI: 10.1098/rstb.2011.0287  1
2012 Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/gbe/evr121  1
2011 Baker RH, Kuehl JV, Wilkinson GS. The Enhancer of split complex arose prior to the diversification of schizophoran flies and is strongly conserved between Drosophila and stalk-eyed flies (Diopsidae). Bmc Evolutionary Biology. 11: 354. PMID 22151427 DOI: 10.1186/1471-2148-11-354  1
2010 Baker RH, Wilkinson GS. Comparative Genomic Hybridization (CGH) reveals a neo-X chromosome and biased gene movement in stalk-eyed flies (genus Teleopsis). Plos Genetics. 6: e1001121. PMID 20862308 DOI: 10.1371/journal.pgen.1001121  1
2010 Birge LM, Pitts ML, Baker R, Wilkinson GS. Length polymorphism and head shape association among genes with polyglutamine repeats in the stalk-eyed fly, Teleopsis dalmanni. Bmc Evolutionary Biology. 10: 227. PMID 20663190 DOI: 10.1186/1471-2148-10-227  1
2009 Baker RH, Morgan J, Wang X, Boore JL, Wilkinson GS. Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae). Bmc Genomics. 10: 361. PMID 19656405 DOI: 10.1186/1471-2164-10-361  1
2008 Kraaijeveld K, Denniff M, Baker RH, Chapman T. The evolution of sperm and non-sperm producing organs in male Drosophila Biological Journal of the Linnean Society. 94: 505-512. DOI: 10.1111/j.1095-8312.2008.01030.x  1
2005 Gatesy J, Baker RH. Hidden likelihood support in genomic data: can forty-five wrongs make a right? Systematic Biology. 54: 483-92. PMID 16012113 DOI: 10.1080/10635150590945368  1
2005 Rogers DW, Baker RH, Chapman T, Denniff M, Pomiankowski A, Fowler K. Direct and correlated responses to artificial selection on male mating frequency in the stalk-eyed fly Cyrtodiopsis dalmanni. Journal of Evolutionary Biology. 18: 642-50. PMID 15842493 DOI: 10.1111/j.1420-9101.2004.00860.x  1
2004 Gatesy J, Baker RH, Hayashi C. Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Systematic Biology. 53: 342-55. PMID 15205058 DOI: 10.1080/10635150490423971  1
2003 Baker RH, Wilkinson GS. Phylogenetic analysis of correlation structure in stalk-eyed flies (Diasemopsis, Diopsidae). Evolution; International Journal of Organic Evolution. 57: 87-103. PMID 12643570  1
2003 Baker RH, Denniff M, Futerman P, Fowler K, Pomiankowski A, Chapman T. Accessory gland size influences time to sexual maturity and mating frequency in the stalk-eyed fly, Cyrtodiopsis dalmanni Behavioral Ecology. 14: 607-611. DOI: 10.1093/beheco/arg053  1
2002 Baker RH, Gatesy J. Is morphology still relevant? Exs. 163-74. PMID 11924494  1
2002 Meier R, Baker R. A cladistic analysis of Diopsidae (Diptera) based on morphological and DNA sequence data Insect Systematics and Evolution. 33: 325-336.  1
2001 Baker RH, Wilkinson GS, DeSalle R. Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Systematic Biology. 50: 87-105. PMID 12116597  1
2001 O'Grady PM, Baker RH, Durando CM, Etges WJ, DeSalle R. Polytene chromosomes as indicators of phylogeny in several species groups of Drosophila. Bmc Evolutionary Biology. 1: 6. PMID 11696235 DOI: 10.1186/1471-2148-1-6  1
2001 Baker RH, Wilkinson GS. Phylogenetic analysis of sexual dimorphism and eye-span allometry in stalk-eyed flies (Diopsidae). Evolution; International Journal of Organic Evolution. 55: 1373-85. PMID 11525461  1
2001 Baker RH, Ashwell RIS, Richards TA, Fowler K, Chapman T, Pomiankowski A. Effects of multiple mating and male eye span on female reproductive output in the stalk-eyed fly, Cyrtodiopsis dalmanni Behavioral Ecology. 12: 732-739. DOI: 10.1093/beheco/12.6.732  1
2000 Durando CM, Baker RH, Etges WJ, Heed WB, Wasserman M, DeSalle R. Phylogenetic analysis of the repleta species group of the genus Drosophila using multiple sources of characters. Molecular Phylogenetics and Evolution. 16: 296-307. PMID 10942616 DOI: 10.1006/mpev.2000.0824  1
1999 Presgraves DC, Baker RH, Wilkinson GS. Coevolution of sperm and female reproductive tract morphology in stalk-eyed flies Proceedings of the Royal Society B: Biological Sciences. 266: 1041-1047. DOI: 10.1098/rspb.1999.0741  1
1999 Gatesy J, O'Grady P, Baker RH. Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level artiodactyl taxa Cladistics. 15: 271-313. DOI: 10.1006/clad.1999.0111  1
1999 Amato G, Egan MG, Schaller GB, Baker RH, Rosenbaum HC, Robichaud WG, DeSalle R. Rediscovery of Roosevelt's barking deer (Muntiacus rooseveltorum) Journal of Mammalogy. 80: 639-643.  1
1999 Amato G, Wharton D, Baker R, Ruvolo M. Molecular systematics for taxonomic placement of a gorilla of uncertain origin Zoo Biology. 18: 429-432.  1
1998 Baker RH, Yu X, DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Molecular Phylogenetics and Evolution. 9: 427-36. PMID 9667991 DOI: 10.1006/mpev.1998.0519  1
1998 Wilkinson GS, Kahler H, Baker RH. Evolution of female mating preferences in stalk-eyed flies Behavioral Ecology. 9: 525-533.  1
1997 Baker RH, DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Systematic Biology. 46: 654-73. PMID 11975337  1
1997 Desalle R, Brower AVZ, Baker R, Remsen J. A hierarchical view of the Hawaiian drosophilidae (Diptera) Pacific Science. 51: 462-474.  1
1996 DeSalle R, Agosti D, Whiting M, Perez-Sweeney B, Remsen J, Baker R, Bonacum J, Bang R. Crossroads, milestones and landmarks in insect development and evolution: implications for systematics. Aliso. 14: 305-321. PMID 11541231  1
1995 Wray CG, Jacobs DK, Kostriken R, Vogler AP, Baker R, DeSalle R. Homologues of the engrailed gene from five molluscan classes Febs Letters. 365: 71-74. PMID 7774719 DOI: 10.1016/0014-5793(95)00372-G  1
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