Douda Bensasson, PhD - Related publications

Faculty of Life Sciences University of Manchester, Manchester, England, United Kingdom 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhang S, Bai X, Ren LY, Sun HH, Tang HP, Vaario LM, Xu J, Zhang YJ. Dynamic Evolution of Eukaryotic Mitochondrial and Nuclear Genomes: A Case Study in the Gourmet Pine Mushroom Tricholoma matsutake. Environmental Microbiology. PMID 34587365 DOI: 10.1111/1462-2920.15792   
2021 Shekhovtsov SV, Efremov YR, Poluboyarova TV, Peltek SE. Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida). Vavilovskii Zhurnal Genetiki I Selektsii. 25: 647-651. PMID 34782884 DOI: 10.18699/VJ21.073   
2021 Tang M, He S, Gong X, Lü P, Taha RH, Chen K. High-Quality Chromosome-Level Genome Assembly of a Single With Resistance by a Combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. Frontiers in Genetics. 12: 718266. PMID 34603381 DOI: 10.3389/fgene.2021.718266   
2021 Hugaboom M, Beck ML, Carrubba KH, Chennupati DV, Gupta A, Liu Q, Reddy MK, Roque F, Hatmaker EA. Complete Mitochondrial Genome Sequences of Nine Aspergillus flavus Strains. Microbiology Resource Announcements. 10: e0097121. PMID 34761953 DOI: 10.1128/MRA.00971-21   
2021 Hahn EE, Alexander MR, Grealy A, Stiller J, Gardiner DM, Holleley CE. Unlocking inaccessible historical genomes preserved in formalin. Molecular Ecology Resources. PMID 34549888 DOI: 10.1111/1755-0998.13505   
2021 Rue CR, Selwyn JD, Cockett PM, Gillis B, Gurski L, Jose P, Kutil BL, Magnuson SF, Ángela López de Mesa L, Overath RD, Smee DL, Bird CE. Genetic diversity across the mitochondrial genome of eastern oysters () in the northern Gulf of Mexico. Peerj. 9: e12205. PMID 34692250 DOI: 10.7717/peerj.12205   
2021 Ke F, Vasseur L, Yi H, Yang L, Wei X, Wang B, Kang M. Gene flow, linked selection, and divergent sorting of ancient polymorphism shape genomic divergence landscape in a group of edaphic specialists. Molecular Ecology. PMID 34664755 DOI: 10.1111/mec.16226   
2021 Senderowicz M, Nowak T, Rojek-Jelonek M, Bisaga M, Papp L, Weiss-Schneeweiss H, Kolano B. Descending Dysploidy and Bidirectional Changes in Genome Size Accompanied (Asteraceae) Evolution. Genes. 12. PMID 34573417 DOI: 10.3390/genes12091436   
2021 Ulaszewski B, Meger J, Mishra B, Thines M, Burczyk J. Complete Chloroplast Genomes of L. Reveal Sequence Conservation in the Inverted Repeat and the Presence of Allelic Variation in NUPTs. Genes. 12. PMID 34573338 DOI: 10.3390/genes12091357   
2021 Qiao Q, Edger PP, Xue L, Qiong, Lu J, Zhang Y, Cao Q, Yocca AE, Platts AE, Knapp SJ, Van Montagu M, Van de Peer Y, Lei J, Zhang T. Evolutionary history and pan-genome dynamics of strawberry ( spp.). Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34697247 DOI: 10.1073/pnas.2105431118   
2021 Hutter CR, Cobb KA, Portik DM, Travers SL, Wood PL, Brown RM. FrogCap: A modular sequence capture probe-set for phylogenomics and population genetics for all frogs, assessed across multiple phylogenetic scales. Molecular Ecology Resources. PMID 34569723 DOI: 10.1111/1755-0998.13517   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Chen J, Chen J, Wang L, Zhao Y, Qin M. The complete chloroplast genome of Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China. Mitochondrial Dna. Part B, Resources. 6: 3098-3099. PMID 34621986 DOI: 10.1080/23802359.2021.1981785   
2021 Yu Z, Zhang W, Fu H, Zou X, Zhao M, Liang S, Gu C, Yang Q, He M, Xiao Q, Xiao W, He L, Lü M. Genomic analysis of Poxviridae and exploring qualified gene sequences for phylogenetics. Computational and Structural Biotechnology Journal. 19: 5479-5486. PMID 34712393 DOI: 10.1016/j.csbj.2021.09.031   
2021 Guo Y, Yao B, Da W, Du F, Yuan M, Li J. The complete chloroplast genome and phylogenetic analysis of Bunge ex Lehm. Mitochondrial Dna. Part B, Resources. 6: 3250-3252. PMID 34693013 DOI: 10.1080/23802359.2021.1991244   
2021 Guo Y, Yao B, Da W, Du F, Yuan M, Li J. The complete chloroplast genome and phylogenetic analysis of Bunge ex Lehm. Mitochondrial Dna. Part B, Resources. 6: 3250-3252. PMID 34693013 DOI: 10.1080/23802359.2021.1991244   
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Singh PR, van de Vossenberg B, Rybarczyk-Mydłowska K, Kowalewska-Groszkowska M, Bert W, Karssen G. An integrated approach for synonymization of with (Nematoda: Hoplolaimidae) reveals high intraspecific mitogenomic variation. Phytopathology. PMID 34818905 DOI: 10.1094/PHYTO-08-21-0363-R   
2021 Sinding MS, Ciucani MM, Ramos-Madrigal J, Carmagnini A, Rasmussen JA, Feng S, Chen G, Vieira FG, Mattiangeli V, Ganjoo RK, Larson G, Sicheritz-Pontén T, Petersen B, Frantz L, Gilbert MTP, et al. Kouprey () genomes unveil polytomic origin of wild Asian . Iscience. 24: 103226. PMID 34712923 DOI: 10.1016/j.isci.2021.103226   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Zhuo Z, Rong W, Li H, Li Y, Luo X, Liu Y, Tang X, Zhang L, Su F, Cui H, Xiao F. Long-read sequencing reveals the structural complexity of genomic integration of HBV DNA in hepatocellular carcinoma. Npj Genomic Medicine. 6: 84. PMID 34642322 DOI: 10.1038/s41525-021-00245-1   
2021 Wang X, Li LL, Xiao Y, Chen XY, Chen JH, Hu XS. A complete sequence of mitochondrial genome of Neolamarckia cadamba and its use for systematic analysis. Scientific Reports. 11: 21452. PMID 34728739 DOI: 10.1038/s41598-021-01040-9   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Hao Z, Li Y, Jiang Y, Xu J, Li J, Luo L. Genome Sequence Analysis of the Fungal Pathogen Using Oxford Nanopore Technology. Journal of Fungi (Basel, Switzerland). 7. PMID 34575738 DOI: 10.3390/jof7090699   
2021 Yi S, Xu T, Song X, Wang W, Wang G, Yu W, Han B. The complete chloroplast genome of Engler and its phylogenetic analysis in the family Araceae. Mitochondrial Dna. Part B, Resources. 6: 3283-3285. PMID 34712813 DOI: 10.1080/23802359.2021.1993107   
2021 Berger C, Rückert C, Blom J, Rabaey K, Kalinowski J, Rosenbaum MA. Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics. Scientific Reports. 11: 1370. PMID 33446769 DOI: 10.1038/s41598-020-80592-8   
2021 Li R, Wang X, Bian C, Gao Z, Zhang Y, Jiang W, Wang M, You X, Cheng L, Pan X, Yang J, Shi Q. Whole-Genome Sequencing of Reveals Phylogenetic Evolution and Immunological Variances in Various Fishes. Frontiers in Genetics. 12: 736500. PMID 34675964 DOI: 10.3389/fgene.2021.736500   
2021 Wen G, Chen S, Fan L, Zeng L, Xu B. The complete chloroplast genome of H.S.Lo (Menispermaceae), an important traditional medicine from South China. Mitochondrial Dna. Part B, Resources. 6: 3269-3270. PMID 34712807 DOI: 10.1080/23802359.2021.1993099   
2021 Liang Q, Liu C, Xu R, Song M, Zhou Z, Li H, Dai W, Yang M, Yu Y, Chen H. fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing. Frontiers in Microbiology. 12: 723577. PMID 34733246 DOI: 10.3389/fmicb.2021.723577   
2021 Trigg SA, Venkataraman YR, Gavery MR, Roberts SB, Bhattacharya D, Downey-Wall A, Eirin-Lopez JM, Johnson KM, Lotterhos KE, Puritz JB, Putnam HM. Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Molecular Ecology Resources. PMID 34709728 DOI: 10.1111/1755-0998.13542   
2021 García-Galán A, Baranowski E, Hygonenq MC, Walch M, Croville G, Citti C, De la Fe C, Nouvel LX. Genome mosaicism in field strains of as footprints of in-host horizontal chromosomal transfer. Applied and Environmental Microbiology. AEM0166121. PMID 34669423 DOI: 10.1128/AEM.01661-21   
2021 Hussain Z, Sun Y, Shah SH, Khan H, Ali S, Iqbal A, Zia MA, Ali SS. The dynamics of genome size and GC contents evolution in genus Nicotiana. Brazilian Journal of Biology = Revista Brasleira De Biologia. 83: e245372. PMID 34669791 DOI: 10.1590/1519-6984.245372   
2021 Chen J, Cai Z, Fan D, Hu J, Hou Y, He Y, Zhang Z, Zhao Z, Gao P, Hu W, Sun J, Li J, Ji K. Chromosome-level assembly of genome and transcriptome reveals two novel allergens Der f 37 and Der f 39. The World Allergy Organization Journal. 14: 100590. PMID 34659625 DOI: 10.1016/j.waojou.2021.100590   
2021 Liu Y, Pei T, Yi S, Du J, Zhang X, Deng X, Yao Q, Deng MR, Zhu H. Phylogenomic Analysis Substantiates the Gene as a Powerful Molecular Marker to Efficiently Differentiate the Most Closely Related Genera , , and . Frontiers in Microbiology. 12: 763359. PMID 34707598 DOI: 10.3389/fmicb.2021.763359   
2021 Lan L, Shi P, Song H, Tang X, Zhou J, Yang J, Yang M, Xu J. De Novo Genome Assembly of Chinese Plateau Honeybee Unravels Intraspecies Genetic Diversity in the Eastern Honeybee, . Insects. 12. PMID 34680661 DOI: 10.3390/insects12100891   
2021 Li G, Guo W, Zhang Y, Cao G, Wang Z. Complete mitochondrial genome of (Artiodactyla: Cervidae). Mitochondrial Dna. Part B, Resources. 6: 3372-3374. PMID 34778556 DOI: 10.1080/23802359.2021.1997118   
2021 Malinin NL, Lee G, Lazzarotto CR, Li Y, Zheng Z, Nguyen NT, Liebers M, Topkar VV, Iafrate AJ, Le LP, Aryee MJ, Joung JK, Tsai SQ. Defining genome-wide CRISPR-Cas genome-editing nuclease activity with GUIDE-seq. Nature Protocols. PMID 34773119 DOI: 10.1038/s41596-021-00626-x   
2021 Ma B, Wang X, Lei C, Tang Y, He J, Gao Y, Zhang Y, Wang H. Identification of Three Novel PmGRI1 Genomic Resistance Islands and One Multidrug Resistant Hybrid Structure of Tn-like Transposon and PmGRI1 in . Antibiotics (Basel, Switzerland). 10. PMID 34680847 DOI: 10.3390/antibiotics10101268   
2021 Alabi N, Wu Y, Bossdorf O, Rieseberg LH, Colautti RI. Genome Report: A draft genome of Alliaria petiolata (garlic mustard) as a model system for invasion genetics. G3 (Bethesda, Md.). PMID 34599816 DOI: 10.1093/g3journal/jkab339   
2021 Wang Y, Zhao B, Choi J, Lee EA. Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans. Mobile Dna. 12: 22. PMID 34663455 DOI: 10.1186/s13100-021-00250-2   
2021 Jang HD, Nam GH, Park MS, Jun J. Characterization of the complete chloroplast genome of endemic to Korea. Mitochondrial Dna. Part B, Resources. 6: 3179-3180. PMID 34660895 DOI: 10.1080/23802359.2021.1925986   
2021 Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121   
2021 Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection. Nature Microbiology. 6: 1526-1536. PMID 34819642 DOI: 10.1038/s41564-021-00993-x   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 Su Q, Zhou X, Wu T, Li K, Xu W, Lin Z, Shen P, Liu B. Rapid visual genotyping method for germline mutants with small genomic fragment deletion by allele-specific PCR and lateral flow nucleic acid biosensor. Molecular Biology Reports. PMID 34698991 DOI: 10.1007/s11033-021-06734-x   
2021 Wang Y, Niu Y, Qiang Z, Tian Y, Li Y. The complete chloroplast genome of (Rosaceae), a medicinal plant found in northwest China. Mitochondrial Dna. Part B, Resources. 6: 3057-3058. PMID 34589590 DOI: 10.1080/23802359.2021.1978892   
2021 Rajwani R, Ohlemacher SI, Zhao G, Liu HB, Bewley CA. Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle. Msystems. e0102021. PMID 34812649 DOI: 10.1128/mSystems.01020-21   
2021 Jain S, Xiao X, Bogdan P, Bruck J. Generator based approach to analyze mutations in genomic datasets. Scientific Reports. 11: 21084. PMID 34702945 DOI: 10.1038/s41598-021-00609-8   
2021 Tao X, Liu B, Dou Q. The karyotype polymorphisms as revealed by FISH with tandem repeats and single-gene probes. Comparative Cytogenetics. 15: 375-392. PMID 34804380 DOI: 10.3897/compcytogen.v15.i4.71525   
2021 Sun J, Wang Y, Garran TA, Qiao P, Wang M, Yuan Q, Guo L, Huang L. Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Based on Chloroplast Genome Resources. Frontiers in Genetics. 12: 721022. PMID 34603384 DOI: 10.3389/fgene.2021.721022