Krista M. Nichols, Ph.D. - Publications

2002 Washington State University, Pullman, WA, United States 
Zoology Biology, Genetics

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Clare CI, Nichols KM, Thrower FP, Berntson EA, Hale MC. Comparative genomics of rainbow trout (): Is the genetic architecture of migratory behavior conserved among populations? Ecology and Evolution. 13: e10241. PMID 37384247 DOI: 10.1002/ece3.10241  0.324
2021 Herpin A, Schartl M, Depince A, Guiguen Y, Bobe J, Hua-Van A, Hayman ES, Octavera A, Yoshizaki G, Nichols KM, Goetz GW, Luckenbach JA. Allelic diversification after transposable element exaptation promoted Gsdf as the master sex determining gene of sablefish. Genome Research. PMID 34183453 DOI: 10.1101/gr.274266.120  0.348
2021 Pan Q, Feron R, Jouanno E, Darras H, Herpin A, Koop B, Rondeau E, Goetz FW, Larson WA, Bernatchez L, Tringali M, Curran SS, Saillant E, Denys GP, von Hippel FA, ... ... Nichols KM, et al. The rise and fall of the ancient northern pike master sex determining gene. Elife. 10. PMID 33506762 DOI: 10.7554/eLife.62858  0.304
2020 Longo GC, Lam L, Basnett B, Samhouri J, Hamilton S, Andrews K, Williams G, Goetz G, McClure M, Nichols KM. Strong population differentiation in lingcod () is driven by a small portion of the genome. Evolutionary Applications. 13: 2536-2554. PMID 33294007 DOI: 10.1111/Eva.13037  0.473
2020 McKinney GJ, Nichols KM, Ford MJ. A mobile sex-determining region, male-specific haplotypes, and rearing environment influence age at maturity in Chinook salmon. Molecular Ecology. PMID 33111366 DOI: 10.1111/mec.15712  0.313
2019 Weinstein SY, Thrower FP, Nichols KM, Hale MC. A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska. Plos One. 14: e0223018. PMID 31539414 DOI: 10.1371/Journal.Pone.0223018  0.436
2019 Campbell MA, Hale MC, McKinney GJ, Nichols KM, Pearse DE. Long-Term Conservation of Ohnologs Through Partial Tetrasomy Following Whole-Genome Duplication in Salmonidae. G3 (Bethesda, Md.). PMID 31010824 DOI: 10.1534/G3.119.400070  0.36
2018 Gavery MR, Nichols KM, Goetz GW, Middleton MA, Swanson P. Characterization of Genetic and Epigenetic Variation in Sperm and Red Blood Cells from Adult Hatchery and Natural-Origin Steelhead, . G3 (Bethesda, Md.). PMID 30275172 DOI: 10.1534/G3.118.200458  0.408
2018 Hale MC, McKinney GJ, Thrower FP, Nichols KM. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. Plos One. 13: e0193009. PMID 29447294 DOI: 10.1371/Journal.Pone.0193009  0.393
2018 Elias A, McLaughlin R, Mackereth R, Wilson C, Nichols KM. Population structure and genomic variation of ecological life history diversity in wild-caught Lake Superior brook trout, Salvelinus fontinalis Journal of Great Lakes Research. 44: 1373-1382. DOI: 10.1016/J.Jglr.2018.08.006  0.41
2018 Andrews KS, Nichols KM, Elz A, Tolimieri N, Harvey CJ, Pacunski R, Lowry D, Yamanaka KL, Tonnes DM. Cooperative research sheds light on population structure and listing status of threatened and endangered rockfish species Conservation Genetics. 19: 865-878. DOI: 10.1007/S10592-018-1060-0  0.343
2017 Hale MC, McKinney GJ, Bell CL, Nichols KM. Using Linkage Maps as a Tool To Determine Patterns of Chromosome Synteny in the Genus Salvelinus. G3 (Bethesda, Md.). PMID 28963166 DOI: 10.1534/G3.117.300317  0.518
2017 Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, ... ... Nichols KM, et al. Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture. Bmc Genomics. 18: 484. PMID 28655320 DOI: 10.1186/S12864-017-3862-8  0.306
2017 Jasonowicz AJ, Goetz FW, Goetz GW, Nichols KM. Love the one you’re with: genomic evidence of panmixia in the sablefish (Anoplopoma fimbria) Canadian Journal of Fisheries and Aquatic Sciences. 74: 377-387. DOI: 10.1139/Cjfas-2016-0012  0.379
2016 Nichols KM, Kozfkay CC, Narum SR. Genomic signatures among Oncorhynchus nerka ecotypes to inform conservation and management of endangered Sockeye Salmon. Evolutionary Applications. 9: 1285-1300. PMID 27877206 DOI: 10.1111/eva.12412  0.312
2016 Hale MC, McKinney GJ, Thrower FP, Nichols KM. RNA-seq reveals differential gene expression in the brains of juvenile resident and migratory smolt rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 20: 136-150. PMID 27693967 DOI: 10.1016/J.Cbd.2016.07.006  0.349
2015 Baerwald MR, Meek MH, Stephens MR, Nagarajan RP, Goodbla AM, Tomalty KM, Thorgaard GH, May B, Nichols KM. Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout. Molecular Ecology. PMID 25958780 DOI: 10.1111/Mec.13231  0.583
2015 Hecht BC, Hard JJ, Thrower FP, Nichols KM. Quantitative genetics of migration-related traits in rainbow and steelhead trout. G3 (Bethesda, Md.). 5: 873-89. PMID 25784164 DOI: 10.1534/G3.114.016469  0.387
2015 McKinney GJ, Hale MC, Goetz G, Gribskov M, Thrower FP, Nichols KM. Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss. Molecular Ecology. 24: 1792-809. PMID 25735875 DOI: 10.1111/Mec.13143  0.348
2014 McKinney GJ, Varian A, Scardina J, Nichols KM. Genetic and morphological divergence in three strains of brook trout Salvelinus fontinalis commonly stocked in Lake Superior. Plos One. 9: e113809. PMID 25479612 DOI: 10.1371/Journal.Pone.0113809  0.362
2014 Hecht BC, Valle ME, Thrower FP, Nichols KM. Divergence in expression of candidate genes for the smoltification process between juvenile resident rainbow and anadromous steelhead trout. Marine Biotechnology (New York, N.Y.). 16: 638-56. PMID 24952010 DOI: 10.1007/S10126-014-9579-7  0.394
2014 Hale MC, Colletti JA, Gahr SA, Scardina J, Thrower FP, Harmon M, Carter M, Phillips RB, Thorgaard GH, Rexroad CE, Nichols KM. Mapping and Expression of Candidate Genes for Development Rate in Rainbow Trout (Oncorhynchus mykiss). The Journal of Heredity. PMID 24744432 DOI: 10.1093/Jhered/Esu018  0.661
2013 Hale MC, Thrower FP, Berntson EA, Miller MR, Nichols KM. Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykiss. G3 (Bethesda, Md.). 3: 1273-85. PMID 23797103 DOI: 10.1534/G3.113.006817  0.448
2013 Phillips RB, Ventura AB, Dekoning JJ, Nichols KM. Mapping rainbow trout immune genes involved in inflammation reveals conserved blocks of immune genes in teleosts. Animal Genetics. 44: 107-13. PMID 23013476 DOI: 10.1111/J.1365-2052.2011.02314.X  0.425
2012 Hecht BC, Thrower FP, Hale MC, Miller MR, Nichols KM. Genetic architecture of migration-related traits in rainbow and steelhead trout, Oncorhynchus mykiss. G3 (Bethesda, Md.). 2: 1113-27. PMID 22973549 DOI: 10.1534/G3.112.003137  0.474
2011 Hale MC, Xu P, Scardina J, Wheeler PA, Thorgaard GH, Nichols KM. Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads. Bmc Genomics. 12: 404. PMID 21824436 DOI: 10.1186/1471-2164-12-404  0.597
2011 Xu P, McIntyre LM, Scardina J, Wheeler PA, Thorgaard GH, Nichols KM. Transcriptome profiling of embryonic development rate in rainbow trout advanced backcross introgression lines. Marine Biotechnology (New York, N.Y.). 13: 215-31. PMID 20352270 DOI: 10.1007/S10126-010-9283-1  0.638
2010 Varian A, Nichols KM. Heritability of morphology in brook trout with variable life histories. Plos One. 5: e12950. PMID 20886080 DOI: 10.1371/Journal.Pone.0012950  0.309
2009 Phillips RB, DeKoning JJ, Ventura AB, Nichols KM, Drew RE, Chaves LD, Reed KM, Felip A, Thorgaard GH. Recombination is suppressed over a large region of the rainbow trout Y chromosome. Animal Genetics. 40: 925-32. PMID 19744144 DOI: 10.1111/J.1365-2052.2009.01944.X  0.766
2009 Masuda M, Thrower F, Nichols KM. The effects of violating Hardy-Weinberg equilibrium assumptions on a cluster-based population mixture analysis of steelhead populations in Southeast Alaska North American Journal of Fisheries Management. 29: 140-150. DOI: 10.1577/M08-032.1  0.306
2008 Nichols KM, Edo AF, Wheeler PA, Thorgaard GH. The genetic basis of smoltification-related traits in Oncorhynchus mykiss. Genetics. 179: 1559-75. PMID 18562654 DOI: 10.1534/Genetics.107.084251  0.624
2007 Nichols KM, Broman KW, Sundin K, Young JM, Wheeler PA, Thorgaard GH. Quantitative trait loci x maternal cytoplasmic environment interaction for development rate in Oncorhynchus mykiss. Genetics. 175: 335-47. PMID 17057232 DOI: 10.1534/Genetics.106.064311  0.634
2007 Phillips R, Dekoning J, Nichols K, Rexroad C, Gahr S, Danzmann R, Naish K, Drew R, Thorgaard G. Assignment of rainbow trout linkage groups to salmonid chromosomes Aquaculture. 272: S299-S300. DOI: 10.1016/J.Aquaculture.2007.07.160  0.726
2006 Phillips RB, Nichols KM, DeKoning JJ, Morasch MR, Keatley KA, Rexroad C, Gahr SA, Danzmann RG, Drew RE, Thorgaard GH. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics. 174: 1661-70. PMID 16951085 DOI: 10.1534/Genetics.105.055269  0.759
2006 Purcell MK, Nichols KM, Winton JR, Kurath G, Thorgaard GH, Wheeler P, Hansen JD, Herwig RP, Park LK. Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus. Molecular Immunology. 43: 2089-106. PMID 16426680 DOI: 10.1016/J.Molimm.2005.12.005  0.541
2006 Thorgaard GH, Nichols KM, Phillips RB. Comparative gene and QTL mapping in aquaculture species Israeli Journal of Aquaculture - Bamidgeh. 58: 341-346.  0.59
2005 Coffman CJ, Doerge RW, Simonsen KL, Nichols KM, Duarte CK, Wolfinger RD, McIntyre LM. Model selection in binary trait locus mapping. Genetics. 170: 1281-97. PMID 15834149 DOI: 10.1534/Genetics.104.033910  0.431
2005 Sundin K, Brown KH, Drew RE, Nichols KM, Wheeler PA, Thorgaard GH. Genetic analysis of a development rate QTL in backcrosses of clonal rainbow trout, Oncorhynchus mykiss Aquaculture. 247: 75-83. DOI: 10.1016/J.Aquaculture.2005.02.054  0.755
2004 Brown KH, Patton SJ, Martin KE, Nichols KM, Armstrong R, Thorgaard GH. Genetic analysis of interior Pacific Northwest Oncorhynchus mykiss reveals apparent ancient hybridization with westslope cutthroat trout Transactions of the American Fisheries Society. 133: 1078-1088. DOI: 10.1577/T03-217.1  0.55
2004 Nichols KM, Wheeler PA, Thorgaard GH. Quantitative trait loci analyses for meristic traits in Oncorhynchus mykiss Environmental Biology of Fishes. 69: 317-331. DOI: 10.1007/978-94-007-0983-6_26  0.67
2003 Nichols KM, Bartholomew J, Thorgaard GH. Mapping multiple genetic loci associated with Ceratomyxa shasta resistance in Oncorhynchus mykiss. Diseases of Aquatic Organisms. 56: 145-54. PMID 14598990 DOI: 10.3354/Dao056145  0.618
2003 Nichols KM, Young WP, Danzmann RG, Robison BD, Rexroad C, Noakes M, Phillips RB, Bentzen P, Spies I, Knudsen K, Allendorf FW, Cunningham BM, Brunelli J, Zhang H, Ristow S, et al. A consolidated linkage map for rainbow trout (Oncorhynchus mykiss) Animal Genetics. 34: 102-115. PMID 12648093 DOI: 10.1046/J.1365-2052.2003.00957.X  0.765
2002 Yoder JA, Mueller MG, Nichols KM, Ristow SS, Thorgaard GH, Ota T, Litman GW. Cloning novel immune-type inhibitory receptors from the rainbow trout, Oncorhynchus mykiss. Immunogenetics. 54: 662-70. PMID 12466899 DOI: 10.1007/S00251-002-0511-3  0.61
2001 Zhang H, Nichols K, Thorgaard GH, Ristow SS. Identification, mapping, and genomic structural analysis of an immunoreceptor tyrosine-based inhibition motif-bearing C-type lectin from homozygous clones of rainbow trout (Oncorhynchus mykiss) Immunogenetics. 53: 751-759. PMID 11862407 DOI: 10.1007/S00251-001-0394-8  0.58
2001 Palti Y, Nichols KM, Waller KI, Parsons JE, Thorgaard GH. Association between DNA polymorphisms tightly linked to MHC class II genes and IHN virus resistance in backcrosses of rainbow and cutthroat trout Aquaculture. 194: 283-289. DOI: 10.1016/S0044-8486(00)00526-3  0.575
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