Hopi E. Hoekstra, Ph.D. - Publications

Affiliations: 
2003-2006 Biological Sciences University of California, San Diego, La Jolla, CA 
 2007- OEB & MCB Harvard University, Cambridge, MA, United States 
Area:
Ecological genomics
Website:
hoekstra.oeb.harvard.edu

88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Baier F, Hoekstra HE. The genetics of morphological and behavioural island traits in deer mice. Proceedings. Biological Sciences. 286: 20191697. PMID 31662081 DOI: 10.1098/rspb.2019.1697  0.92
2019 Barrett RDH, Laurent S, Mallarino R, Pfeifer SP, Xu CCY, Foll M, Wakamatsu K, Duke-Cohan JS, Jensen JD, Hoekstra HE. Linking a mutation to survival in wild mice. Science (New York, N.Y.). 363: 499-504. PMID 30705186 DOI: 10.1126/science.aav3824  1
2018 Kocher SD, Mallarino R, Rubin BER, Yu DW, Hoekstra HE, Pierce NE. The genetic basis of a social polymorphism in halictid bees. Nature Communications. 9: 4338. PMID 30337532 DOI: 10.1038/s41467-018-06824-8  1
2018 Fisher HS, Hook KA, Weber WD, Hoekstra HE. Sibling rivalry: Males with more brothers develop larger testes. Ecology and Evolution. 8: 8197-8203. PMID 30250695 DOI: 10.1002/ece3.4337  1
2018 Gonçalves GL, Maestri R, Moreira GRP, Jacobi MAM, Freitas TRO, Hoekstra HE. Divergent genetic mechanism leads to spiny hair in rodents. Plos One. 13: e0202219. PMID 30118524 DOI: 10.1371/journal.pone.0202219  1
2018 Mallarino R, Pillay N, Hoekstra HE, Schradin C. African striped mice. Current Biology : Cb. 28: R299-R301. PMID 29614283 DOI: 10.1016/j.cub.2018.02.009  1
2018 Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution. PMID 29346646 DOI: 10.1093/molbev/msy004  1
2017 Metz HC, Bedford NL, Pan YL, Hoekstra HE. Evolution and Genetics of Precocious Burrowing Behavior in Peromyscus Mice. Current Biology : Cb. PMID 29199077 DOI: 10.1016/j.cub.2017.10.061  1
2017 Bendesky A, Kwon YM, Lassance JM, Lewarch CL, Yao S, Peterson BK, He MX, Dulac C, Hoekstra HE. The genetic basis of parental care evolution in monogamous mice. Nature. PMID 28424518 DOI: 10.1038/nature22074  1
2016 Kingsley EP, Kozak KM, Pfeifer SP, Yang DS, Hoekstra HE. The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice. Evolution; International Journal of Organic Evolution. PMID 27958661 DOI: 10.1111/evo.13150  1
2016 Fisher HS, Jacobs-Palmer E, Lassance JM, Hoekstra HE. The genetic basis and fitness consequences of sperm midpiece size in deer mice. Nature Communications. 7: 13652. PMID 27910854 DOI: 10.1038/ncomms13652  1
2016 Mallarino R, Henegar C, Mirasierra M, Manceau M, Schradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE. Developmental mechanisms of stripe patterns in rodents. Nature. PMID 27806375 DOI: 10.1038/nature20109  1
2016 Bear DM, Lassance JM, Hoekstra HE, Datta SR. The Evolving Neural and Genetic Architecture of Vertebrate Olfaction. Current Biology : Cb. 26: R1039-R1049. PMID 27780046 DOI: 10.1016/j.cub.2016.09.011  1
2016 Mallarino R, Hoekstra HE, Manceau M. Developmental genetics in emerging rodent models: case studies and perspectives. Current Opinion in Genetics & Development. 39: 182-186. PMID 27639098 DOI: 10.1016/j.gde.2016.07.011  1
2016 Mallet J, Hoekstra HE. Ecological Genetics: A Key Gene for Mimicry and Melanism. Current Biology : Cb. 26: R802-4. PMID 27623261 DOI: 10.1016/j.cub.2016.07.031  1
2016 Hu CK, Hoekstra HE. Peromyscus burrowing: A model system for behavioral evolution. Seminars in Cell & Developmental Biology. PMID 27496333 DOI: 10.1016/j.semcdb.2016.08.001  0.92
2016 Greer PL, Bear DM, Lassance JM, Bloom ML, Tsukahara T, Pashkovski SL, Masuda FK, Nowlan AC, Kirchner R, Hoekstra HE, Datta SR. A Family of non-GPCR Chemosensors Defines an Alternative Logic for Mammalian Olfaction. Cell. 165: 1734-48. PMID 27238024 DOI: 10.1016/j.cell.2016.05.001  1
2016 Mallarino R, Linden TA, Linnen CR, Hoekstra HE. The role of isoforms in the evolution of cryptic coloration in Peromyscus mice. Molecular Ecology. PMID 27105018 DOI: 10.1111/mec.13663  1
2015 Corbett-Detig R, Jacobs-Palmer E, Hartl D, Hoekstra H. Direct Gamete Sequencing Reveals No Evidence for Segregation Distortion in House Mouse Hybrids. Plos One. 10: e0131933. PMID 26121240 DOI: 10.1371/journal.pone.0131933  1
2015 Bedford NL, Hoekstra HE. Peromyscus mice as a model for studying natural variation. Elife. 4. PMID 26083802 DOI: 10.7554/eLife.06813  1
2015 Kocher SD, Li C, Yang W, Tan H, Yi SV, Yang X, Hoekstra HE, Zhang G, Pierce NE, Yu DW. Erratum to: The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. Genome Biology. 16: 34. PMID 25723594 DOI: 10.1186/s13059-014-0574-0  1
2014 Poh YP, Domingues VS, Hoekstra HE, Jensen JD. On the prospect of identifying adaptive loci in recently bottlenecked populations. Plos One. 9: e110579. PMID 25383711 DOI: 10.1371/journal.pone.0110579  1
2014 Laland K, Uller T, Feldman M, Sterelny K, Müller GB, Moczek A, Jablonka E, Odling-Smee J, Wray GA, Hoekstra HE, Futuyma DJ, Lenski RE, Mackay TF, Schluter D, Strassmann JE. Does evolutionary theory need a rethink? Nature. 514: 161-4. PMID 25297418 DOI: 10.1038/514161a  1
2014 Fisher HS, Giomi L, Hoekstra HE, Mahadevan L. The dynamics of sperm cooperation in a competitive environment. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25056618 DOI: 10.1098/rspb.2014.0296  1
2014 Hoekstra H. The secret of a natural blond Nature Genetics. 46: 660-661. PMID 24965725 DOI: 10.1038/ng.3019  1
2013 Kocher SD, Li C, Yang W, Tan H, Yi SV, Yang X, Hoekstra HE, Zhang G, Pierce NE, Yu DW. The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. Genome Biology. 14: R142. PMID 24359881 DOI: 10.1186/gb-2013-14-12-r142  1
2013 Kowalko JE, Rohner N, Rompani SB, Peterson BK, Linden TA, Yoshizawa M, Kay EH, Weber J, Hoekstra HE, Jeffery WR, Borowsky R, Tabin CJ. Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms. Current Biology : Cb. 23: 1874-83. PMID 24035545 DOI: 10.1016/j.cub.2013.07.056  1
2013 Linnen CR, Poh YP, Peterson BK, Barrett RD, Larson JG, Jensen JD, Hoekstra HE. Adaptive evolution of multiple traits through multiple mutations at a single gene. Science (New York, N.Y.). 339: 1312-6. PMID 23493712 DOI: 10.1126/science.1233213  1
2013 Weber JN, Peterson BK, Hoekstra HE. Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice. Nature. 493: 402-5. PMID 23325221 DOI: 10.1038/nature11816  1
2013 Losos JB, Arnold SJ, Bejerano G, Brodie ED, Hibbett D, Hoekstra HE, Mindell DP, Monteiro A, Moritz C, Orr HA, Petrov DA, Renner SS, Ricklefs RE, Soltis PS, Turner TL. Evolutionary biology for the 21st century. Plos Biology. 11: e1001466. PMID 23319892 DOI: 10.1371/journal.pbio.1001466  1
2012 Tong W, Hoekstra H. Mus spicilegus. Current Biology : Cb. 22: R858-9. PMID 23098587 DOI: 10.1016/j.cub.2012.08.054  1
2012 Domingues VS, Poh YP, Peterson BK, Pennings PS, Jensen JD, Hoekstra HE. Evidence of adaptation from ancestral variation in young populations of beach mice. Evolution; International Journal of Organic Evolution. 66: 3209-23. PMID 23025610 DOI: 10.1111/j.1558-5646.2012.01669.x  1
2012 Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE. Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. Plos One. 7: e37135. PMID 22675423 DOI: 10.1371/journal.pone.0037135  1
2012 Kronforst MR, Barsh GS, Kopp A, Mallet J, Monteiro A, Mullen SP, Protas M, Rosenblum EB, Schneider CJ, Hoekstra HE. Unraveling the thread of nature's tapestry: the genetics of diversity and convergence in animal pigmentation. Pigment Cell & Melanoma Research. 25: 411-33. PMID 22578174 DOI: 10.1111/j.1755-148X.2012.01014.x  1
2012 Hoekstra HE. Genomics: Stickleback is the catch of the day. Nature. 484: 46-7. PMID 22481355 DOI: 10.1038/484046a  1
2012 Gonçalves GL, Hoekstra HE, Freitas TRO. Striking coat colour variation in tuco-tucos (Rodentia: Ctenomyidae): A role for the melanocortin-1 receptor? Biological Journal of the Linnean Society. 105: 665-680. DOI: 10.1111/j.1095-8312.2011.01839.x  1
2011 Barrett RD, Hoekstra HE. Molecular spandrels: tests of adaptation at the genetic level. Nature Reviews. Genetics. 12: 767-80. PMID 22005986 DOI: 10.1038/nrg3015  1
2011 Manceau M, Domingues VS, Mallarino R, Hoekstra HE. The developmental role of Agouti in color pattern evolution. Science (New York, N.Y.). 331: 1062-5. PMID 21350176 DOI: 10.1126/science.1200684  1
2011 Metz HC, Manceau M, Hoekstra HE. Turing patterns: how the fish got its spots. Pigment Cell & Melanoma Research. 24: 12-4. PMID 21118391 DOI: 10.1111/j.1755-148X.2010.00814.x  1
2010 Hull JM, Mindell DP, Talbot SL, Kay EH, Hoekstra HE, Ernest HB. Population structure and plumage polymorphism: The intraspecific evolutionary relationships of a polymorphic raptor, Buteo jamaicensis harlani. Bmc Evolutionary Biology. 10: 224. PMID 20650000 DOI: 10.1186/1471-2148-10-224  1
2010 Manceau M, Domingues VS, Linnen CR, Rosenblum EB, Hoekstra HE. Convergence in pigmentation at multiple levels: mutations, genes and function. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2439-50. PMID 20643733 DOI: 10.1098/rstb.2010.0104  1
2010 Weber JN, Peters MB, Tsyusko OV, Linnen CR, Hagen C, Schable NA, Tuberville TD, McKee AM, Lance SL, Jones KL, Fisher HS, Dewey MJ, Hoekstra HE, Glenn TC. Five Hundred Microsatellite Loci for Peromyscus. Conservation Genetics (Print). 11: 1243-1246. PMID 20563244 DOI: 10.1007/s10592-009-9941-x  1
2010 Hubbard JK, Uy JA, Hauber ME, Hoekstra HE, Safran RJ. Vertebrate pigmentation: from underlying genes to adaptive function. Trends in Genetics : Tig. 26: 231-9. PMID 20381892 DOI: 10.1016/j.tig.2010.02.002  1
2010 Vignieri SN, Larson JG, Hoekstra HE. The selective advantage of crypsis in mice. Evolution; International Journal of Organic Evolution. 64: 2153-8. PMID 20163447 DOI: 10.1111/j.1558-5646.2010.00976.x  1
2010 Chuong EB, Tong W, Hoekstra HE. Maternal-fetal conflict: rapidly evolving proteins in the rodent placenta. Molecular Biology and Evolution. 27: 1221-5. PMID 20123797 DOI: 10.1093/molbev/msq034  1
2010 Turner LM, Young AR, Römpler H, Schöneberg T, Phelps SM, Hoekstra HE. Monogamy evolves through multiple mechanisms: evidence from V1aR in deer mice. Molecular Biology and Evolution. 27: 1269-78. PMID 20097658 DOI: 10.1093/molbev/msq013  1
2010 Fisher HS, Hoekstra HE. Competition drives cooperation among closely related sperm of deer mice. Nature. 463: 801-3. PMID 20090679 DOI: 10.1038/nature08736  1
2010 Rosenblum EB, Römpler H, Schöneberg T, Hoekstra HE. Molecular and functional basis of phenotypic convergence in white lizards at White Sands. Proceedings of the National Academy of Sciences of the United States of America. 107: 2113-7. PMID 20080544 DOI: 10.1073/pnas.0911042107  1
2010 Robinson GE, Banks JA, Padilla DK, Burggren WW, Cohen CS, Delwiche CF, Funk V, Hoekstra HE, Jarvis ED, Johnson L, Martindale MQ, Rio CMD, Medina M, Salt DE, Sinha S, et al. Empowering 21st century biology Bioscience. 60: 923-930. DOI: 10.1525/bio.2010.60.11.8  1
2009 Linnen CR, Hoekstra HE. Measuring natural selection on genotypes and phenotypes in the wild. Cold Spring Harbor Symposia On Quantitative Biology. 74: 155-68. PMID 20413707 DOI: 10.1101/sqb.2009.74.045  1
2009 Aminetzach YT, Srouji JR, Kong CY, Hoekstra HE. Convergent evolution of novel protein function in shrew and lizard venom. Current Biology : Cb. 19: 1925-31. PMID 19879144 DOI: 10.1016/j.cub.2009.09.022  1
2009 Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. On the origin and spread of an adaptive allele in deer mice. Science (New York, N.Y.). 325: 1095-8. PMID 19713521 DOI: 10.1126/science.1175826  1
2009 Mullen LM, Vignieri SN, Gore JA, Hoekstra HE. Adaptive basis of geographic variation: genetic, phenotypic and environmental differences among beach mouse populations. Proceedings. Biological Sciences / the Royal Society. 276: 3809-18. PMID 19656790 DOI: 10.1098/rspb.2009.1146  1
2009 Kingsley EP, Manceau M, Wiley CD, Hoekstra HE. Melanism in peromyscus is caused by independent mutations in agouti. Plos One. 4: e6435. PMID 19649329 DOI: 10.1371/journal.pone.0006435  1
2009 Steiner CC, Römpler H, Boettger LM, Schöneberg T, Hoekstra HE. The genetic basis of phenotypic convergence in beach mice: similar pigment patterns but different genes. Molecular Biology and Evolution. 26: 35-45. PMID 18832078 DOI: 10.1093/molbev/msn218  1
2009 Weber JN, Hoekstra HE. The evolution of burrowing behaviour in deer mice (genus Peromyscus) Animal Behaviour. 77: 603-609. DOI: 10.1016/j.anbehav.2008.10.031  1
2008 Turner LM, Chuong EB, Hoekstra HE. Comparative analysis of testis protein evolution in rodents. Genetics. 179: 2075-89. PMID 18689890 DOI: 10.1534/genetics.107.085902  1
2008 Turner LM, Hoekstra HE. Causes and consequences of the evolution of reproductive proteins. The International Journal of Developmental Biology. 52: 769-80. PMID 18649289 DOI: 10.1387/ijdb.082577lt  1
2008 Abzhanov A, Extavour CG, Groover A, Hodges SA, Hoekstra HE, Kramer EM, Monteiro A. Are we there yet? Tracking the development of new model systems. Trends in Genetics : Tig. 24: 353-60. PMID 18514356 DOI: 10.1016/j.tig.2008.04.002  1
2008 Kay EH, Hoekstra HE. Rodents. Current Biology : Cb. 18: R406-10. PMID 18492466 DOI: 10.1016/j.cub.2008.03.019  1
2008 Mullen LM, Hoekstra HE. Natural selection along an environmental gradient: a classic cline in mouse pigmentation. Evolution; International Journal of Organic Evolution. 62: 1555-70. PMID 18489719 DOI: 10.1111/j.1558-5646.2008.00425.x  1
2008 Turner LM, Hoekstra HE. Reproductive protein evolution within and between species: maintenance of divergent ZP3 alleles in Peromyscus. Molecular Ecology. 17: 2616-28. PMID 18466231 DOI: 10.1111/j.1365-294X.2008.03780.x  1
2008 Stinchcombe JR, Hoekstra HE. Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity. 100: 158-70. PMID 17314923 DOI: 10.1038/sj.hdy.6800937  1
2007 Coyne JA, Hoekstra HE. Evolution of protein expression: new genes for a new diet. Current Biology : Cb. 17: R1014-6. PMID 18054763 DOI: 10.1016/j.cub.2007.10.009  1
2007 Steiner CC, Weber JN, Hoekstra HE. Adaptive variation in beach mice produced by two interacting pigmentation genes. Plos Biology. 5: e219. PMID 17696646 DOI: 10.1371/journal.pbio.0050219  1
2007 Hoekstra HE, Coyne JA. The locus of evolution: evo devo and the genetics of adaptation. Evolution; International Journal of Organic Evolution. 61: 995-1016. PMID 17492956 DOI: 10.1111/j.1558-5646.2007.00105.x  1
2007 Storz JF, Hoekstra HE. The study of adaptation and speciation in the genomic era Journal of Mammalogy. 88: 1-4. DOI: 10.1644/06-MAMM-S-232R1.1  1
2007 Coyne JA, Hoekstra HE. The greatest dying: A fate worse than global warming New Republic. 237: 7-8+10.  1
2006 Hoekstra HE, Hirschmann RJ, Bundey RA, Insel PA, Crossland JP. A single amino acid mutation contributes to adaptive beach mouse color pattern. Science (New York, N.Y.). 313: 101-4. PMID 16825572 DOI: 10.1126/science.1126121  1
2006 Hoekstra HE. Genetics, development and evolution of adaptive pigmentation in vertebrates. Heredity. 97: 222-34. PMID 16823403 DOI: 10.1038/sj.hdy.6800861  1
2006 Turner LM, Hoekstra HE. Adaptive evolution of fertilization proteins within a genus: variation in ZP2 and ZP3 in deer mice (Peromyscus). Molecular Biology and Evolution. 23: 1656-69. PMID 16774977 DOI: 10.1093/molbev/msl035  1
2006 Mullen LM, Hirschmann RJ, Prince KL, Glenn TC, Dewey MJ, Hoekstra HE. Sixty polymorphic microsatellite markers for the oldfield mouse developed in Peromyscus polionotus and Peromyscus maniculatus Molecular Ecology Notes. 6: 36-40. DOI: 10.1111/j.1471-8286.2005.01128.x  1
2005 Payseur BA, Hoekstra HE. Signatures of reproductive isolation in patterns of single nucleotide diversity across inbred strains of mice. Genetics. 171: 1905-16. PMID 16143616 DOI: 10.1534/genetics.105.046193  1
2005 Hoekstra HE, Krenz JG, Nachman MW. Local adaptation in the rock pocket mouse (Chaetodipus intermedius): natural selection and phylogenetic history of populations. Heredity. 94: 217-28. PMID 15523507 DOI: 10.1038/sj.hdy.6800600  1
2004 Rosenblum EB, Hoekstra HE, Nachman MW. Adaptive reptile color variation and the evolution of the Mc1r gene. Evolution; International Journal of Organic Evolution. 58: 1794-808. PMID 15446431  1
2004 Hoekstra HE, Drumm KE, Nachman MW. Ecological genetics of adaptive color polymorphism in pocket mice: geographic variation in selected and neutral genes. Evolution; International Journal of Organic Evolution. 58: 1329-41. PMID 15266981  1
2004 Hoekstra HE, Price T. Evolution. Parallel evolution is in the genes. Science (New York, N.Y.). 303: 1779-81. PMID 15031483 DOI: 10.1126/science.1096413  1
2003 Nachman MW, Hoekstra HE, D'Agostino SL. The genetic basis of adaptive melanism in pocket mice. Proceedings of the National Academy of Sciences of the United States of America. 100: 5268-73. PMID 12704245 DOI: 10.1073/pnas.0431157100  1
2003 Hoekstra HE, Nachman MW. Different genes underlie adaptive melanism in different populations of rock pocket mice. Molecular Ecology. 12: 1185-94. PMID 12694282 DOI: 10.1046/j.1365-294X.2003.01788.x  1
2003 Hoekstra HE. Unequal transmission of mitochondrial haplotypes in natural populations of field mice with XY females (genus Akodon) American Naturalist. 161: 29-39. PMID 12650460 DOI: 10.1086/344910  1
2001 Kingsolver JG, Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hill CE, Hoang A, Gibert P, Beerli P. The strength of phenotypic selection in natural populations. The American Naturalist. 157: 245-61. PMID 18707288 DOI: 10.1086/319193  1
2001 Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hoang A, Hill CE, Beerli P, Kingsolver JG. Strength and tempo of directional selection in the wild. Proceedings of the National Academy of Sciences of the United States of America. 98: 9157-60. PMID 11470913 DOI: 10.1073/pnas.161281098  1
2001 Lingenfelter PA, Delbridge ML, Thomas S, Hoekstra HE, Mitchell MJ, Graves JA, Disteche CM. Expression and conservation of processed copies of the RBMX gene. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 12: 538-45. PMID 11420617 DOI: 10.1007/s00335001-0003-z  1
2001 Hoekstra HE, Hoekstra JM. An unusual sex-determination system in South American field mice (Genus Akodon): the role of mutation, selection, and meiotic drive in maintaining XY females. Evolution; International Journal of Organic Evolution. 55: 190-7. PMID 11263738  1
2000 Hoekstra HE, Edwards SV. Multiple origins of XY female mice (genus Akodon): phylogenetic and chromosomal evidence. Proceedings. Biological Sciences / the Royal Society. 267: 1825-31. PMID 11052532 DOI: 10.1098/rspb.2000.1217  1
2000 Hess CM, Gasper J, Hoekstra HE, Hill CE, Edwards SV. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Research. 10: 613-23. PMID 10810083 DOI: 10.1101/gr.10.5.613  1
1998 Hoekstra HE, Fagan WF. Body size, dispersal ability and compositional disharmony: The carnivore-dominated fauna of the Kuril Islands Diversity and Distributions. 4: 135-149.  1
1998 Gunther KA, Hoekstra HE. Bear-inflicted human injuries in Yellowstone National Park, 1970-1994 Ursus. 10: 377-384.  1
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