James Jeffrey Bull, Ph.D. - Publications

Affiliations: 
Biology University of Texas, Austin, Texas 
Area:
Evolutionary Biology

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bull JJ, Cunningham CW, Molineux IJ, Badgett MR, Hillis DM. EXPERIMENTAL MOLECULAR EVOLUTION OF BACTERIOPHAGE T7. Evolution; International Journal of Organic Evolution. 47: 993-1007. PMID 28564289 DOI: 10.1111/J.1558-5646.1993.Tb02130.X  0.54
2019 Bull JJ, Charnov EL. ENIGMATIC REPTILIAN SEX RATIOS. Evolution; International Journal of Organic Evolution. 43: 1561-1566. PMID 28564232 DOI: 10.1111/J.1558-5646.1989.Tb02605.X  0.53
2019 Bull JJ, Charnov EL. ON IRREVERSIBLE EVOLUTION. Evolution; International Journal of Organic Evolution. 39: 1149-1155. PMID 28561496 DOI: 10.1111/J.1558-5646.1985.Tb00455.X  0.577
2013 Cecchini N, Schmerer M, Molineux IJ, Springman R, Bull JJ. Evolutionarily stable attenuation by genome rearrangement in a virus. G3 (Bethesda, Md.). 3: 1389-97. PMID 23797106 DOI: 10.1534/G3.113.006403  0.772
2012 Springman R, Molineux IJ, Duong C, Bull RJ, Bull JJ. Evolutionary stability of a refactored phage genome. Acs Synthetic Biology. 1: 425-30. PMID 23519680 DOI: 10.1021/Sb300040V  0.769
2012 Springman R, Kapadia-Desai DS, Molineux IJ, Bull JJ. Evolutionary recovery of a recombinant viral genome. G3 (Bethesda, Md.). 2: 825-30. PMID 22870405 DOI: 10.1534/G3.112.002758  0.776
2012 Bull JJ, Molineux IJ, Wilke CO. Slow fitness recovery in a codon-modified viral genome. Molecular Biology and Evolution. 29: 2997-3004. PMID 22532576 DOI: 10.1093/Molbev/Mss119  0.309
2012 Nguyen AH, Molineux IJ, Springman R, Bull JJ. Multiple genetic pathways to similar fitness limits during viral adaptation to a new host. Evolution; International Journal of Organic Evolution. 66: 363-74. PMID 22276534 DOI: 10.1111/J.1558-5646.2011.01433.X  0.78
2011 Bull JJ, Heineman RH, Wilke CO. The phenotype-fitness map in experimental evolution of phages. Plos One. 6: e27796. PMID 22132144 DOI: 10.1371/Journal.Pone.0027796  0.743
2011 Bull J, Charnov EL, Carson T. In memoriam. George C. Williams (1926–2010). The American Naturalist. 177: v-vii. PMID 21142578 DOI: 10.1086/657901  0.438
2009 Harcombe WR, Springman R, Bull JJ. Compensatory evolution for a gene deletion is not limited to its immediate functional network. Bmc Evolutionary Biology. 9: 106. PMID 19445716 DOI: 10.1186/1471-2148-9-106  0.691
2009 Heineman RH, Bull JJ, Molineux IJ. Layers of evolvability in a bacteriophage life history trait. Molecular Biology and Evolution. 26: 1289-98. PMID 19264970 DOI: 10.1093/Molbev/Msp037  0.766
2009 Bull JJ, Harcombe WR. Population dynamics constrain the cooperative evolution of cross-feeding. Plos One. 4: e4115. PMID 19127304 DOI: 10.1371/Journal.Pone.0004115  0.631
2008 Heineman RH, Springman R, Bull JJ. Optimal foraging by bacteriophages through host avoidance. The American Naturalist. 171: E149-57. PMID 18254683 DOI: 10.1086/528962  0.735
2008 Bull JJ, Molineux IJ. Predicting evolution from genomics: Experimental evolution of bacteriophage T7 Heredity. 100: 453-463. PMID 18212807 DOI: 10.1038/Sj.Hdy.6801087  0.311
2007 Heineman RH, Bull JJ. Testing optimality with experimental evolution: lysis time in a bacteriophage. Evolution; International Journal of Organic Evolution. 61: 1695-709. PMID 17598749 DOI: 10.1111/J.1558-5646.2007.00132.X  0.766
2007 Bull JJ, Springman R, Molineux IJ. Compensatory evolution in response to a novel RNA polymerase: Orthologous replacement of a central network gene Molecular Biology and Evolution. 24: 900-908. PMID 17220516 DOI: 10.1093/Molbev/Msm006  0.388
2007 Holloway AK, Palzkill T, Bull JJ. Experimental evolution of gene duplicates in a bacterial plasmid model. Journal of Molecular Evolution. 64: 215-22. PMID 17211548 DOI: 10.1007/S00239-006-0087-X  0.643
2005 Harcombe WR, Bull JJ. Impact of phages on two-species bacterial communities. Applied and Environmental Microbiology. 71: 5254-9. PMID 16151111 DOI: 10.1128/Aem.71.9.5254-5259.2005  0.633
2005 Heineman RH, Molineux IJ, Bull JJ. Evolutionary robustness of an optimal phenotype: re-evolution of lysis in a bacteriophage deleted for its lysin gene. Journal of Molecular Evolution. 61: 181-91. PMID 16096681 DOI: 10.1007/S00239-004-0304-4  0.777
2005 Sachs JL, Bull JJ. Experimental evolution of conflict mediation between genomes. Proceedings of the National Academy of Sciences of the United States of America. 102: 390-5. PMID 15630098 DOI: 10.1073/pnas.0405738102  0.559
2004 Bull JJ, Pfennig DW, Wang IN. Genetic details, optimization and phage life histories. Trends in Ecology & Evolution. 19: 76-82. PMID 16701232 DOI: 10.1016/j.tree.2003.10.008  0.549
2004 Sachs JL, Mueller UG, Wilcox TP, Bull JJ. The evolution of cooperation. The Quarterly Review of Biology. 79: 135-60. PMID 15232949 DOI: 10.1086/383541  0.542
2002 Parish DA, Vise P, Wichman HA, Bull JJ, Baker RJ. Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation. Cytogenetic and Genome Research. 96: 191-7. PMID 12438798 DOI: 10.1159/000063038  0.511
2001 Holder KK, Bull JJ. Profiles of adaptation in two similar viruses. Genetics. 159: 1393-404. PMID 11779783  0.687
1997 Bull JJ, Badgett MR, Wichman HA, Huelsenbeck JP, Hillis DM, Gulati A, Ho C, Molineux IJ. Exceptional convergent evolution in a virus. Genetics. 147: 1497-507. PMID 9409816  0.708
1997 Cunningham CW, Jeng K, Husti J, Badgett M, Molineux IJ, Hillis DM, Bull JJ. Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7. Molecular Biology and Evolution. 14: 113-6. PMID 9000760 DOI: 10.1093/Oxfordjournals.Molbev.A025697  0.52
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Reply from j.p. Huelsenbeck, j.j. Bull and C.w. Cunningham. Trends in Ecology & Evolution. 11: 335. PMID 21237868 DOI: 10.1016/S0169-5347(96)91643-2  0.492
1996 Huelsenbeck JP, Bull JJ, Cunningham CW. Combining data in phylogenetic analysis. Trends in Ecology & Evolution. 11: 152-8. PMID 21237790 DOI: 10.1016/0169-5347(96)10006-9  0.575
1996 Huelsenbeck JP, Bull JJ. A likelihood ratio test to detect conflicting phylogenetic signal Systematic Biology. 45: 92-98. DOI: 10.1093/Sysbio/45.1.92  0.592
1994 Huelsenbeck JP, Swofford DL, Cunningham CW, Bull JJ, Waddell PJ. Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis? Systematic Biology. 43: 288-291. DOI: 10.1093/Sysbio/43.2.288  0.752
1993 Bradley RD, Bull JJ, Johnson AD, Hillis DM. Origin of a novel allele in a mammalian hybrid zone. Proceedings of the National Academy of Sciences of the United States of America. 90: 8939-41. PMID 8415634 DOI: 10.1073/Pnas.90.19.8939  0.62
1993 Bull JJ, Huelsenbeck JP, Cunningham CW, Swofford DL, Waddell PJ. Partitioning and combining data in phylogenetic analysis Systematic Biology. 42: 384-397. DOI: 10.1093/Sysbio/42.3.384  0.742
1993 Hillis DM, Bull JJ. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis Systematic Biology. 42: 182-192. DOI: 10.1093/Sysbio/42.2.182  0.487
1992 Hillis DM, Bull JJ, White ME, Badgett MR, Molineux IJ. Experimental phylogenetics: generation of a known phylogeny. Science (New York, N.Y.). 255: 589-92. PMID 1736360  0.498
1992 Bull JJ, Molineux IJ, Werren JH. Selfish genes Science. 256: 65. PMID 1566058  0.596
1991 Hillis DM, Bull JJ. Of genes and genomes. Science (New York, N.Y.). 254: 528. PMID 1948027 DOI: 10.1126/Science.1948027  0.512
1989 Charnov EL, Bull JJ. The primary sex ratio under environmental sex determination. Journal of Theoretical Biology. 139: 431-6. PMID 2615381 DOI: 10.1016/S0022-5193(89)80063-3  0.495
1989 Pease CM, Lande R, Bull JJ. A Model of Population Growth, Dispersal and Evolution in a Changing Environment Ecology. 70: 1657-1664. DOI: 10.2307/1938100  0.499
1989 Charnov EL, Bull JJ. Non-fisherian sex ratios with sex change and environmental sex determination Nature. 338: 148-150. DOI: 10.1038/338148A0  0.529
1988 Bull JJ, Hillis DM, O'Steen S. Mammalian ZFY sequences exist in reptiles regardless of sex-determining mechanism. Science (New York, N.Y.). 242: 567-9. PMID 3140382 DOI: 10.1126/Science.3140382  0.506
1987 Kirkpatrick M, Bull JJ. SEX-RATIO SELECTION WITH MIGRATION: DOES FISHER'S RESULT HOLD? Evolution; International Journal of Organic Evolution. 41: 218-221. PMID 28563754 DOI: 10.1111/J.1558-5646.1987.Tb05784.X  0.43
1986 Charnov EL, Bull JJ. Sex allocation, pollinator attraction and fruit dispersal in cosexual plants Journal of Theoretical Biology. 118: 321-325. DOI: 10.1016/S0022-5193(86)80062-5  0.481
1985 Charnov EL, Bull JJ. Sex allocation in a patchy environment: a marginal value theorem. Journal of Theoretical Biology. 115: 619-24. PMID 4046613 DOI: 10.1016/S0022-5193(85)80144-2  0.506
1985 Bull JJ, Legler JM, Vogt RC. Non-Temperature Dependent Sex Determination in Two Suborders of Turtles Copeia. 1985: 784. DOI: 10.2307/1444773  0.639
1981 Charnov EL, Bull JJ, Mitchell-Olds ST. A Note on Sex and Life Histories The American Naturalist. 117: 814-818. DOI: 10.1086/283768  0.475
1979 Bull JJ, Shine R. Iteroparous Animals that Skip Opportunities for Reproduction The American Naturalist. 114: 296-303. DOI: 10.1086/283476  0.433
1979 Shine R, Bull JJ. The Evolution of Live-Bearing in Lizards and Snakes The American Naturalist. 113: 905-923. DOI: 10.1086/283444  0.483
1977 Bull JJ, Charnov EL. Changes in the heterogametic mechanism of sex determination. Heredity. 39: 1-14. PMID 268319 DOI: 10.1038/Hdy.1977.38  0.534
1977 Shine R, Bull JJ. Skewed Sex Ratios in Snakes Copeia. 1977: 228. DOI: 10.2307/1443903  0.49
1976 Charnov EL, Bull JJ, Maynard Smith J. Why be an hermaphrodite? Nature. 263: 125-126. DOI: 10.1038/263125A0  0.73
1974 Bull JJ, Moon RG, Legler JM. Male heterogamety in kinosternid turtles (genus staurotypus). Cytogenetics and Cell Genetics. 13: 419-25. PMID 4462978 DOI: 10.1159/000130295  0.654
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