Magnus Nordborg, PhD - Publications

Affiliations: 
Gregor Mendel Institute 

122 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pisupati R, Nizhynska V, Mollá Morales A, Nordborg M. On the causes of gene-body methylation variation in Arabidopsis thaliana. Plos Genetics. 19: e1010728. PMID 37141384 DOI: 10.1371/journal.pgen.1010728  0.315
2023 Jaegle B, Pisupati R, Soto-Jiménez LM, Burns R, Rabanal FA, Nordborg M. Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity. Genome Biology. 24: 44. PMID 36895055 DOI: 10.1186/s13059-023-02875-3  0.435
2022 Sasaki E, Gunis J, Reichardt-Gomez I, Nizhynska V, Nordborg M. Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes. Plos Genetics. 18: e1010345. PMID 36084135 DOI: 10.1371/journal.pgen.1010345  0.322
2021 Burns R, Mandáková T, Gunis J, Soto-Jiménez LM, Liu C, Lysak MA, Novikova PY, Nordborg M. Gradual evolution of allopolyploidy in Arabidopsis suecica. Nature Ecology & Evolution. PMID 34413506 DOI: 10.1038/s41559-021-01525-w  0.377
2021 Lopez-Arboleda WA, Reinert S, Nordborg M, Korte A. Global genetic heterogeneity in adaptive traits. Molecular Biology and Evolution. PMID 34240182 DOI: 10.1093/molbev/msab208  0.432
2021 Sasaki E, Köcher T, Filiault DL, Nordborg M. Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity. Heredity. PMID 34226672 DOI: 10.1038/s41437-021-00456-3  0.446
2020 Tsuchimatsu T, Kakui H, Yamazaki M, Marona C, Tsutsui H, Hedhly A, Meng D, Sato Y, Städler T, Grossniklaus U, Kanaoka MM, Lenhard M, Nordborg M, Shimizu KK. Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana. Nature Communications. 11: 2885. PMID 32514036 DOI: 10.1038/S41467-020-16679-7  0.431
2019 Sasaki E, Kawakatsu T, Ecker JR, Nordborg M. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. Plos Genetics. 15: e1008492. PMID 31887137 DOI: 10.1371/Journal.Pgen.1008492  0.421
2019 Aköz G, Nordborg M. The Aquilegia genome reveals a hybrid origin of core eudicots. Genome Biology. 20: 256. PMID 31779695 DOI: 10.1186/S13059-019-1888-8  0.472
2019 Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925  0.539
2019 Duszynska D, Vilhjalmsson B, Castillo Bravo R, Swamidatta S, Juenger TE, Donoghue MTA, Comte A, Nordborg M, Sharbel TF, Brychkova G, McKeown PC, Spillane C. Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction. PMID 30903284 DOI: 10.1007/S00497-019-00369-6  0.631
2019 Barton N, Hermisson J, Nordborg M. Why structure matters. Elife. 8. PMID 30895925 DOI: 10.7554/Elife.45380  0.47
2018 Nagler M, Nägele T, Gilli C, Fragner L, Korte A, Platzer A, Farlow A, Nordborg M, Weckwerth W. Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field. Frontiers in Plant Science. 9: 1556. PMID 30459786 DOI: 10.3389/Fpls.2018.01556  0.422
2018 Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, ... ... Nordborg M, et al. The a genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. Elife. 7. PMID 30325307 DOI: 10.7554/Elife.36426  0.455
2018 Sasaki E, Frommlet F, Nordborg M. GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data. G3 (Bethesda, Md.). PMID 30068524 DOI: 10.1534/G3.118.200571  0.449
2018 Nordborg M, Barton NH, Hermisson J. Decision letter: Polygenic adaptation on height is overestimated due to uncorrected stratification in genome-wide association studies Elife. DOI: 10.7554/Elife.39702.041  0.405
2018 Nordborg M, Tessmar K. Decision letter: Decoupled maternal and zygotic genetic effects shape the evolution of development Elife. DOI: 10.7554/Elife.37143.018  0.327
2018 Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, ... ... Nordborg M, et al. Author response: The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history Elife. DOI: 10.7554/Elife.36426.050  0.425
2017 Kerdaffrec E, Nordborg M. The maternal environment interacts with genetic variation in regulating seed dormancy in Swedish Arabidopsis thaliana. Plos One. 12: e0190242. PMID 29281703 DOI: 10.1371/Journal.Pone.0190242  0.465
2017 Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL, Nordborg M. Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples. Scientific Data. 4: 170184. PMID 29257129 DOI: 10.1038/Sdata.2017.184  0.38
2017 Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, ... ... Nordborg M, et al. Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Nature Genetics. PMID 29083404 DOI: 10.1038/Ng.3980  0.408
2017 Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954  0.535
2017 Tsuchimatsu T, Goubet PM, Gallina S, Holl AC, Fobis-Loisy I, Bergès H, Marande W, Prat E, Meng D, Long Q, Platzer A, Nordborg M, Vekemans X, Castric V. Patterns of polymorphism at the self-incompatibility locus in 1,083 Arabidopsis thaliana genomes. Molecular Biology and Evolution. PMID 28379456 DOI: 10.1093/Molbev/Msx122  0.456
2017 Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R, Nordborg M. Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. G3 (Bethesda, Md.). PMID 28188182 DOI: 10.1534/G3.117.040204  0.539
2017 Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nature Communications. 8: 14458. PMID 28181519 DOI: 10.1038/Ncomms14458  0.632
2017 Imprialou M, Kahles A, Steffen JG, Osborne EJ, Gan X, Lempe J, Bhomra A, Belfield E, Visscher A, Greenhalgh R, Harberd NP, Goram R, Hein J, Robert-Seilaniantz A, Jones J, ... ... Nordborg M, et al. Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics. PMID 28179367 DOI: 10.1534/Genetics.116.192823  0.529
2017 Yu Novikova P, Tsuchimatsu T, Simon S, Nizhynska V, Voronin V, Burns R, Fedorenko OM, Holm S, Säll T, Prat E, Marande W, Castric V, Nordborg M. Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica. Molecular Biology and Evolution. PMID 28087777 DOI: 10.1093/Molbev/Msw299  0.436
2016 Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M. Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis. Elife. 5. PMID 27966430 DOI: 10.7554/Elife.22502  0.53
2016 Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986  0.533
2016 Watson JM, Platzer A, Kazda A, Akimcheva S, Valuchova S, Nizhynska V, Nordborg M, Riha K. Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27729523 DOI: 10.1073/Pnas.1609686113  0.304
2016 Horton MW, Willems G, Sasaki E, Koornneef M, Nordborg M. The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana. Plant, Cell & Environment. PMID 27487257 DOI: 10.1111/Pce.12812  0.47
2016 Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Hoda A, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, ... ... Nordborg M, et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27436134 DOI: 10.1111/Tpj.13262  0.824
2016 Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, ... ... Nordborg M, et al. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics. PMID 27428747 DOI: 10.1038/Ng.3617  0.387
2016 Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, ... ... Nordborg M, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044  0.694
2016 Meng D, Dubin M, Zhang P, Osborne EJ, Stegle O, Clark RM, Nordborg M. Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana. Plos Genetics. 12: e1006141. PMID 27398721 DOI: 10.1371/Journal.Pgen.1006141  0.404
2016 Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M. Author response: Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis Elife. DOI: 10.7554/Elife.22502.029  0.338
2015 Sasaki E, Zhang P, Atwell S, Meng D, Nordborg M. "Missing" G x E Variation Controls Flowering Time in Arabidopsis thaliana. Plos Genetics. 11: e1005597. PMID 26473359 DOI: 10.1371/Journal.Pgen.1005597  0.434
2015 Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, ... ... Nordborg M, et al. 50 years of Arabidopsis research: highlights and future directions. The New Phytologist. PMID 26465351 DOI: 10.1111/Nph.13687  0.413
2015 Weigel D, Nordborg M. Population Genomics for Understanding Adaptation in Wild Plant Species. Annual Review of Genetics. PMID 26436459 DOI: 10.1146/Annurev-Genet-120213-092110  0.489
2015 Warren WC, Jasinska AJ, Garcia-Perez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, ... ... Nordborg M, et al. The genome of the vervet (Chlorocebus aethiops sabaeus). Genome Research. PMID 26377836 DOI: 10.1101/Gr.192922.115  0.522
2015 Farlow A, Long H, Arnoux S, Sung W, Doak TG, Nordborg M, Lynch M. The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe. Genetics. 201: 737-44. PMID 26265703 DOI: 10.1534/Genetics.115.177329  0.314
2015 Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, ... ... Nordborg M, et al. DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. Elife. 4: e05255. PMID 25939354 DOI: 10.7554/Elife.05255  0.653
2015 Fulcher N, Teubenbacher A, Kerdaffrec E, Farlow A, Nordborg M, Riha K. Genetic architecture of natural variation of telomere length in Arabidopsis thaliana. Genetics. 199: 625-35. PMID 25488978 DOI: 10.1534/Genetics.114.172163  0.472
2015 Dubin MJ, Zhang P, Meng D, Remigereau M, Osborne EJ, Casale FP, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, ... ... Nordborg M, et al. Author response: DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation Elife. DOI: 10.7554/Elife.05255.031  0.65
2014 Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J. Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nature Communications. 5: 5320. PMID 25382143 DOI: 10.1038/Ncomms6320  0.689
2014 Huber CD, Nordborg M, Hermisson J, Hellmann I. Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana. Molecular Biology and Evolution. 31: 3026-39. PMID 25158800 DOI: 10.1093/Molbev/Msu247  0.366
2014 Li P, Filiault D, Box MS, Kerdaffrec E, van Oosterhout C, Wilczek AM, Schmitt J, McMullan M, Bergelson J, Nordborg M, Dean C. Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana. Genes & Development. 28: 1635-40. PMID 25035417 DOI: 10.1101/Gad.245993.114  0.492
2014 Juraniec M, Lequeux H, Hermans C, Willems G, Nordborg M, Schneeberger K, Salis P, Vromant M, Lutts S, Verbruggen N. Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana. The New Phytologist. 201: 810-24. PMID 24134393 DOI: 10.1111/Nph.12554  0.334
2013 Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, ... ... Nordborg M, et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics. 45: 884-90. PMID 23793030 DOI: 10.1038/Ng.2678  0.744
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Nordborg M, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  0.751
2013 Debieu M, Tang C, Stich B, Sikosek T, Effgen S, Josephs E, Schmitt J, Nordborg M, Koornneef M, de Meaux J. Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana. Plos One. 8: e61075. PMID 23717385 DOI: 10.1371/Journal.Pone.0061075  0.795
2013 Beleza S, Johnson NA, Candille SI, Absher DM, Coram MA, Lopes J, Campos J, Araújo II, Anderson TM, Vilhjálmsson BJ, Nordborg M, Correia E Silva A, Shriver MD, Rocha J, Barsh GS, et al. Genetic architecture of skin and eye color in an African-European admixed population. Plos Genetics. 9: e1003372. PMID 23555287 DOI: 10.1371/Journal.Pgen.1003372  0.677
2013 Long Q, Zhang Q, Vilhjalmsson BJ, Forai P, Seren Ü, Nordborg M. JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models. Bioinformatics (Oxford, England). 29: 1220-2. PMID 23479353 DOI: 10.1093/Bioinformatics/Btt122  0.663
2013 Vilhjálmsson BJ, Nordborg M. The nature of confounding in genome-wide association studies. Nature Reviews. Genetics. 14: 1-2. PMID 23165185 DOI: 10.1038/Nrg3382  0.735
2012 Seren Ü, Vilhjálmsson BJ, Horton MW, Meng D, Forai P, Huang YS, Long Q, Segura V, Nordborg M. GWAPP: a web application for genome-wide association mapping in Arabidopsis. The Plant Cell. 24: 4793-805. PMID 23277364 DOI: 10.1105/Tpc.112.108068  0.762
2012 Chao DY, Silva A, Baxter I, Huang YS, Nordborg M, Danku J, Lahner B, Yakubova E, Salt DE. Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. Plos Genetics. 8: e1002923. PMID 22969436 DOI: 10.1371/Journal.Pgen.1002923  0.418
2012 Korte A, Vilhjálmsson BJ, Segura V, Platt A, Long Q, Nordborg M. A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nature Genetics. 44: 1066-71. PMID 22902788 DOI: 10.1038/Ng.2376  0.749
2012 Segura V, Vilhjálmsson BJ, Platt A, Korte A, Seren Ãœ, Long Q, Nordborg M. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nature Genetics. 44: 825-30. PMID 22706313 DOI: 10.1038/Ng.2314  0.745
2012 Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics. 44: 212-6. PMID 22231484 DOI: 10.1038/Ng.1042  0.845
2011 Fournier-Level A, Korte A, Cooper MD, Nordborg M, Schmitt J, Wilczek AM. A map of local adaptation in Arabidopsis thaliana. Science (New York, N.Y.). 334: 86-9. PMID 21980109 DOI: 10.1126/Science.1209271  0.49
2011 Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue MT, Spillane C, Nordborg M, Rehmsmeier M, Köhler C. High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm. Plos Genetics. 7: e1002126. PMID 21698132 DOI: 10.1371/Journal.Pgen.1002126  0.411
2011 Strange A, Li P, Lister C, Anderson J, Warthmann N, Shindo C, Irwin J, Nordborg M, Dean C. Major-effect alleles at relatively few loci underlie distinct vernalization and flowering variation in Arabidopsis accessions. Plos One. 6: e19949. PMID 21625501 DOI: 10.1371/Journal.Pone.0019949  0.509
2011 Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M. Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. Database : the Journal of Biological Databases and Curation. 2011: bar014. PMID 21609965 DOI: 10.1093/Database/Bar014  0.696
2011 Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J. Source verification of mis-identified Arabidopsis thaliana accessions. The Plant Journal : For Cell and Molecular Biology. 67: 554-66. PMID 21481029 DOI: 10.1111/J.1365-313X.2011.04606.X  0.407
2011 Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, ... ... Nordborg M, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 43: 476-81. PMID 21478890 DOI: 10.1038/Ng.807  0.748
2011 Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M. PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing. Plos One. 6: e15292. PMID 21264334 DOI: 10.1371/Journal.Pone.0015292  0.446
2011 Keurentjes JJB, Willems G, Van Eeuwijk F, Nordborg M, Koornneef M. A comparison of population types used for QTL mapping in Arabidopsis thaliana Plant Genetic Resources: Characterisation and Utilisation. 9: 185-188. DOI: 10.1017/S1479262111000086  0.506
2010 Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O, Salt DE. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. Plos Genetics. 6: e1001193. PMID 21085628 DOI: 10.1371/Journal.Pgen.1001193  0.507
2010 Li Y, Huang Y, Bergelson J, Nordborg M, Borevitz JO. Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 21199-204. PMID 21078970 DOI: 10.1073/Pnas.1007431107  0.507
2010 Platt A, Vilhjálmsson BJ, Nordborg M. Conditions under which genome-wide association studies will be positively misleading. Genetics. 186: 1045-52. PMID 20813880 DOI: 10.1534/Genetics.110.121665  0.757
2010 Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, ... ... Nordborg M, et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465: 632-6. PMID 20520716 DOI: 10.1038/Nature09083  0.759
2010 Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JD. Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proceedings of the National Academy of Sciences of the United States of America. 107: 10302-7. PMID 20479233 DOI: 10.1073/Pnas.0913160107  0.753
2010 Brachi B, Faure N, Horton M, Flahauw E, Vazquez A, Nordborg M, Bergelson J, Cuguen J, Roux F. Linkage and association mapping of Arabidopsis thaliana flowering time in nature. Plos Genetics. 6: e1000940. PMID 20463887 DOI: 10.1371/Journal.Pgen.1000940  0.539
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Nordborg M, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.827
2010 Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, ... ... Nordborg M, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/Journal.Pgen.1000843  0.468
2010 Cooper EA, Whittall JB, Hodges SA, Nordborg M. Genetic variation at nuclear loci fails to distinguish two morphologically distinct species of Aquilegia. Plos One. 5: e8655. PMID 20098727 DOI: 10.1371/Journal.Pone.0008655  0.498
2010 Nordborg M, Weigel D. Evolutionary and Population Genetics of Plants Annual Review of Genetics. 45: 110301100158074. DOI: 10.1146/Annurev-Genet-110410-132449  0.402
2008 Nordborg M, Weigel D. Next-generation genetics in plants. Nature. 456: 720-3. PMID 19079047 DOI: 10.1038/Nature07629  0.487
2008 Ding Y, Larson G, Rivas G, Lundberg C, Geller L, Ouyang C, Weitzel J, Archambeau J, Slater J, Daly MB, Benson AB, Kirkwood JM, O'Dwyer PJ, Sutphen R, Stewart JA, ... ... Nordborg M, et al. Strong signature of natural selection within an FHIT intron implicated in prostate cancer risk. Plos One. 3: e3533. PMID 18953408 DOI: 10.1371/Journal.Pone.0003533  0.384
2008 Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, Nordborg M. Exploring population genetic models with recombination using efficient forward-time simulations. Genetics. 178: 2417-27. PMID 18430959 DOI: 10.1534/Genetics.107.085332  0.707
2008 Foxe JP, Dar VU, Zheng H, Nordborg M, Gaut BS, Wright SI. Selection on amino acid substitutions in Arabidopsis. Molecular Biology and Evolution. 25: 1375-83. PMID 18390851 DOI: 10.1093/Molbev/Msn079  0.408
2008 Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T. Evolution and control of imprinted FWA genes in the genus Arabidopsis. Plos Genetics. 4: e1000048. PMID 18389059 DOI: 10.1371/Journal.Pgen.1000048  0.369
2007 Zhao K, Nordborg M, Marjoram P. Genome-wide association mapping using mixed-models: application to GAW15 Problem 3. Bmc Proceedings. 1: S164. PMID 18466510 DOI: 10.1186/1753-6561-1-S1-S164  0.75
2007 Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M. Recombination and linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 39: 1151-5. PMID 17676040 DOI: 10.1038/Ng2115  0.84
2007 Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, Hu TT, Clark RM, Nasrallah JB, Weigel D, Nordborg M. The evolution of selfing in Arabidopsis thaliana. Science (New York, N.Y.). 317: 1070-2. PMID 17656687 DOI: 10.1126/Science.1143153  0.767
2007 Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (New York, N.Y.). 317: 338-42. PMID 17641193 DOI: 10.1126/Science.1138632  0.838
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  0.772
2007 Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, ... ... Nordborg M, et al. A single IGF1 allele is a major determinant of small size in dogs. Science (New York, N.Y.). 316: 112-5. PMID 17412960 DOI: 10.1126/Science.1137045  0.82
2007 Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M. An Arabidopsis example of association mapping in structured samples. Plos Genetics. 3: e4. PMID 17238287 DOI: 10.1371/Journal.Pgen.0030004  0.816
2006 Shindo C, Lister C, Crevillen P, Nordborg M, Dean C. Variation in the epigenetic silencing of FLC contributes to natural variation in Arabidopsis vernalization response. Genes & Development. 20: 3079-83. PMID 17114581 DOI: 10.1101/Gad.405306  0.352
2006 Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 174: 1517-28. PMID 16980396 DOI: 10.1534/Genetics.106.060723  0.72
2006 Bakker EG, Stahl EA, Toomajian C, Nordborg M, Kreitman M, Bergelson J. Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range. Molecular Ecology. 15: 1405-18. PMID 16626462 DOI: 10.1111/J.1365-294X.2006.02884.X  0.809
2006 Toomajian C, Hu TT, Aranzana MJ, Lister C, Tang C, Zheng H, Zhao K, Calabrese P, Dean C, Nordborg M. A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome. Plos Biology. 4: e137. PMID 16623598 DOI: 10.1371/Journal.Pbio.0040137  0.815
2006 Rosenberg NA, Nordborg M. A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations. Genetics. 173: 1665-78. PMID 16582435 DOI: 10.1534/Genetics.105.055335  0.427
2006 Jakobsson M, Hagenblad J, Tavaré S, Säll T, Halldén C, Lind-Halldén C, Nordborg M. A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers. Molecular Biology and Evolution. 23: 1217-31. PMID 16549398 DOI: 10.1093/Molbev/Msk006  0.433
2006 Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. Association mapping with single-feature polymorphisms. Genetics. 173: 1125-33. PMID 16510789 DOI: 10.1534/Genetics.105.052720  0.735
2006 Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 172: 2441-8. PMID 16299388 DOI: 10.1534/Genetics.104.040311  0.751
2006 Kramer EM, Holappa L, Gould B, Jaramillo MA, Hodges S, Borevitz J, Nordborg M, Tomkins J. New genetic and genomic tools for the study of floral evolution Developmental Biology. 295: 337. DOI: 10.1016/J.Ydbio.2006.04.047  0.475
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. Plos Genetics. 1: e60. PMID 16292355 DOI: 10.1371/Journal.Pgen.0010060  0.831
2005 Weigel D, Nordborg M. Natural variation in Arabidopsis. How do we find the causal genes? Plant Physiology. 138: 567-8. PMID 15955918 DOI: 10.1104/Pp.104.900157  0.392
2005 Shindo C, Aranzana MJ, Lister C, Baxter C, Nicholls C, Nordborg M, Dean C. Role of FRIGIDA and FLOWERING LOCUS C in determining variation in flowering time of Arabidopsis. Plant Physiology. 138: 1163-73. PMID 15908596 DOI: 10.1104/Pp.105.061309  0.473
2005 Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, et al. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology. 3: e196. PMID 15907155 DOI: 10.1371/Journal.Pbio.0030196  0.819
2005 Sjödin P, Kaj I, Krone S, Lascoux M, Nordborg M. On the meaning and existence of an effective population size. Genetics. 169: 1061-70. PMID 15489538 DOI: 10.1534/Genetics.104.026799  0.312
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-wide association mapping in Arabidopsis thaliana identifies previously known genes responsible for variation in flowering time and pathogen resistance Plos Genetics. DOI: 10.1371/Journal.Pgen.0010060.Eor  0.801
2005 Araozarsa SJ, Kim S, Zhao K, Bakkes E, Hortors M, Jakob K, Lister C, Mofiter J, Shirsdo CH, Tang C, Toomajiars C, Traw B, Zhersg H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-Wide Association Mapping in Identifies Previously Known Flowering Time and Pathogen Resistance Genes Plos Genetics. 1: 531-539. DOI: 10 1371/journal pgen.0010060  0.357
2004 Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470  0.838
2004 Wiuf C, Zhao K, Innan H, Nordborg M. The probability and chromosomal extent of trans-specific polymorphism. Genetics. 168: 2363-72. PMID 15371365 DOI: 10.1534/Genetics.104.029488  0.725
2004 Padhukasahasram B, Marjoram P, Nordborg M. Estimating the rate of gene conversion on human chromosome 21. American Journal of Human Genetics. 75: 386-97. PMID 15250027 DOI: 10.1086/423451  0.751
2003 Borevitz JO, Nordborg M. The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiology. 132: 718-25. PMID 12805600 DOI: 10.1104/Pp.103.023549  0.459
2003 Innan H, Padhukasahasram B, Nordborg M. The pattern of polymorphism on human chromosome 21. Genome Research. 13: 1158-68. PMID 12799351 DOI: 10.1101/Gr.466303  0.771
2003 Arnheim N, Calabrese P, Nordborg M. Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. American Journal of Human Genetics. 73: 5-16. PMID 12772086 DOI: 10.1086/376419  0.374
2002 Zhang K, Calabrese P, Nordborg M, Sun F. Haplotype block structure and its applications to association studies: power and study designs. American Journal of Human Genetics. 71: 1386-94. PMID 12439824 DOI: 10.1086/344780  0.425
2002 Innan H, Nordborg M. Recombination or mutational hot spots in human mtDNA? Molecular Biology and Evolution. 19: 1122-7. PMID 12082131 DOI: 10.1093/Oxfordjournals.Molbev.A004170  0.32
2002 Hagenblad J, Nordborg M. Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana. Genetics. 161: 289-98. PMID 12019242  0.389
2002 Rosenberg NA, Nordborg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews. Genetics. 3: 380-90. PMID 11988763 DOI: 10.1038/Nrg795  0.481
2002 Nordborg M, Tavaré S. Linkage disequilibrium: what history has to tell us. Trends in Genetics : Tig. 18: 83-90. PMID 11818140 DOI: 10.1016/S0168-9525(02)02557-X  0.467
2002 Nordborg M, Innan H. Molecular population genetics. Current Opinion in Plant Biology. 5: 69-73. PMID 11788311 DOI: 10.1016/S1369-5266(01)00230-8  0.485
2002 Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/Ng813  0.734
1997 Charlesworth B, Nordborg M, Charlesworth D. The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genetical Research. 70: 155-74. PMID 9449192 DOI: 10.1017/S0016672397002954  0.472
1997 Nordborg M. Structured coalescent processes on different time scales. Genetics. 146: 1501-14. PMID 9258691  0.332
1996 Nordborg M, Charlesworth B, Charlesworth D. The effect of recombination on background selection. Genetical Research. 67: 159-74. PMID 8801188 DOI: 10.1017/S0016672300033619  0.439
1996 Nordborg M, Charlesworth B, Charlesworth D. Increased levels of polymorphism surrounding selectively maintained sites in highly selfing species Proceedings of the Royal Society B: Biological Sciences. 263: 1033-1039. DOI: 10.1098/Rspb.1996.0152  0.397
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