John Klicka - Publications

Biological Sciences University of Nevada, Las Vegas, Las Vegas, NV, United States 
Genetics, Evolution and Development Biology, Geobiology

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Manthey JD, Klicka J, Spellman GM. The genomic signature of allopatric speciation in a songbird is shaped by genome architecture (Aves: Certhia americana). Genome Biology and Evolution. PMID 34042960 DOI: 10.1093/gbe/evab120  0.44
2021 Bryson RW, Grummer JA, Connors EM, Tirpak J, McCormack JE, Klicka J. Cryptic diversity across the Trans-Mexican Volcanic Belt of Mexico in the montane bunchgrass lizard Sceloporus subniger/ (Squamata: Phrynosomatidae). Zootaxa. 4963: zootaxa.4963.2.5. PMID 33903554 DOI: 10.11646/zootaxa.4963.2.5  0.64
2020 Slager DL, Epperly KL, Ha RR, Rohwer S, Wood C, Van Hemert C, Klicka J. Cryptic and extensive hybridization between ancient lineages of American crows. Molecular Ecology. PMID 32034818 DOI: 10.1111/Mec.15377  0.44
2019 Linck E, Epperly K, Van Els P, Spellman GM, Bryson RW, McCormack JE, Canales-Del-Castillo R, Klicka J. Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex. Systematic Biology. PMID 31135028 DOI: 10.1093/Sysbio/Syz027  0.64
2018 Blair C, Bryson RW, Linkem CW, Lazcano D, Klicka J, McCormack JE. Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus). Molecular Ecology Resources. PMID 30565862 DOI: 10.1111/1755-0998.12970  0.64
2018 Ramírez-Barrera SM, Hernández-Baños BE, Jaramillo-Correa JP, Klicka J. Deep divergence of Red-crowned Ant Tanager (: Cardinalidae), a multilocus phylogenetic analysis with emphasis in Mesoamerica. Peerj. 6: e5496. PMID 30225165 DOI: 10.7717/Peerj.5496  0.36
2018 Bryson RW, Zarza E, Grummer JA, Parra-Olea G, Flores-Villela O, Klicka J, McCormack JE. Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands. Molecular Phylogenetics and Evolution. 125: 78-84. PMID 29555294 DOI: 10.1016/J.Ympev.2018.03.024  0.64
2018 Tilston Smith B, Bryson RW, Mauck WM, Chaves J, Robbins MB, Aleixo A, Klicka J. Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae). Molecular Phylogenetics and Evolution. PMID 29551521 DOI: 10.1016/J.Ympev.2018.03.012  0.64
2017 Harvey MG, Seeholzer GF, Smith BT, Rabosky DL, Cuervo AM, Brumfield RT. Positive association between population genetic differentiation and speciation rates in New World birds. Proceedings of the National Academy of Sciences of the United States of America. PMID 28559330 DOI: 10.1073/Pnas.1617397114  0.6
2016 Barrowclough GF, Cracraft J, Klicka J, Zink RM. How Many Kinds of Birds Are There and Why Does It Matter? Plos One. 11: e0166307. PMID 27880775 DOI: 10.1371/Journal.Pone.0166307  0.68
2016 Zarza E, Faircloth BC, Tsai WL, Bryson RW, Klicka J, McCormack JE. Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology. PMID 27543758 DOI: 10.1111/Mec.13813  1
2016 Bryson RW, Faircloth BC, Tsai WLE, McCormack JE, Klicka J. Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae) Auk. 133: 451-458. DOI: 10.1642/Auk-16-26.1  1
2015 Manthey JD, Klicka J, Spellman GM. Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Heredity. PMID 25853518 DOI: 10.1038/Hdy.2015.27  1
2015 Barker K, Burns KJ, Klicka J, Lanyon SM, Lovette IJ. New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies Auk. 132: 333-348. DOI: 10.1642/Auk-14-110.1  1
2015 Miller MJ, Angehr GR, Ridgely RS, Klicka J, Oscar OG, Arauz J, Campos C. E, Buitrago-Rosas D. Annotated checklist of the birds (Aves) of Cerro Hoya National Park, Azuero Peninsula, Panamá Check List. 11. DOI: 10.15560/11.2.1585  1
2014 Slager DL, Klicka J. Polyphyly of Hylophilus and a new genus for the Tawny-crowned Greenlet (Aves: Passeriformes: Vireonidae). Zootaxa. 3884: 194-6. PMID 25543778 DOI: 10.11646/Zootaxa.3884.2.8  1
2014 Slager DL, Battey CJ, Bryson RW, Voelker G, Klicka J. A multilocus phylogeny of a major New World avian radiation: the Vireonidae. Molecular Phylogenetics and Evolution. 80: 95-104. PMID 25109651 DOI: 10.1016/J.Ympev.2014.07.021  1
2014 Slager DL, Klicka J. A new genus for the American Tree Sparrow (Aves: Passeriformes: Passerellidae) Zootaxa. 3821: 398-400. PMID 24989754 DOI: 10.11646/zootaxa.3821.3.9  1
2014 van Els P, Spellman GM, Smith BT, Klicka J. Extensive gene flow characterizes the phylogeography of a North American migrant bird: Black-headed Grosbeak (Pheucticus melanocephalus). Molecular Phylogenetics and Evolution. 78: 148-59. PMID 24841539 DOI: 10.1016/J.Ympev.2014.04.028  1
2014 Klicka J, Keith Barker F, Burns KJ, Lanyon SM, Lovette IJ, Chaves JA, Bryson RW. A comprehensive multilocus assessment of sparrow (Aves: Passerellidae) relationships. Molecular Phylogenetics and Evolution. 77: 177-82. PMID 24792084 DOI: 10.1016/J.Ympev.2014.04.025  1
2014 Burns KJ, Shultz AJ, Title PO, Mason NA, Barker FK, Klicka J, Lanyon SM, Lovette IJ. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution. 75: 41-77. PMID 24583021 DOI: 10.1016/J.Ympev.2014.02.006  1
2014 Powell AF, Barker FK, Lanyon SM, Burns KJ, Klicka J, Lovette IJ. A comprehensive species-level molecular phylogeny of the New World blackbirds (Icteridae). Molecular Phylogenetics and Evolution. 71: 94-112. PMID 24291659 DOI: 10.1016/J.Ympev.2013.11.009  1
2014 Hernández-Baños BE, Zamudio-Beltrán LE, Eguiarte-Fruns LE, Klicka J, García-Moreno J. The Basilinna genus (Aves: Trochilidae): An evaluation based on molecular evidence and implications for the genus Hylocharis Revista Mexicana De Biodiversidad. 85: 797-807. DOI: 10.7550/Rmb.35769  1
2014 Manthey JD, Klicka J, Spellman GM. Effects of climate change on the evolution of Brown Creeper (Certhia americana) lineages Auk. 131: 559-570. DOI: 10.1642/Auk-13-242.1  1
2014 Bryson RW, Chaves J, Smith BT, Miller MJ, Winker K, Pérez-Emán JL, Klicka J. Diversification across the New World within the 'blue' cardinalids (Aves: Cardinalidae) Journal of Biogeography. 41: 587-599. DOI: 10.1111/Jbi.12218  1
2013 Pulgarín-R PC, Smith BT, Bryson RW, Spellman GM, Klicka J. Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae). Molecular Phylogenetics and Evolution. 69: 1222-7. PMID 23769955 DOI: 10.1016/J.Ympev.2013.05.022  1
2013 Voelker G, Bowie RC, Klicka J. Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system. Molecular Ecology. 22: 3333-44. PMID 23710782 DOI: 10.1111/Mec.12305  1
2013 Smith BT, Klicka J. Examining the role of effective population size on mitochondrial and multilocus divergence time discordance in a songbird. Plos One. 8: e55161. PMID 23457463 DOI: 10.1371/Journal.Pone.0055161  1
2013 Barker FK, Burns KJ, Klicka J, Lanyon SM, Lovette IJ. Going to extremes: contrasting rates of diversification in a recent radiation of new world passerine birds. Systematic Biology. 62: 298-320. PMID 23229025 DOI: 10.1093/Sysbio/Sys094  1
2013 Smith BT, Bryson RW, Chua V, Africa L, Klicka J. Speciational history of North American Haemorhous finches (Aves: Fringillidae) inferred from multilocus data. Molecular Phylogenetics and Evolution. 66: 1055-9. PMID 23219607 DOI: 10.1016/J.Ympev.2012.11.016  1
2013 Smith BT, Ribas CC, Whitney BM, Hernández-Baños BE, Klicka J. Identifying biases at different spatial and temporal scales of diversification: a case study in the Neotropical parrotlet genus Forpus. Molecular Ecology. 22: 483-94. PMID 23190339 DOI: 10.1111/Mec.12118  1
2013 Chaves JA, Hidalgo JR, Klicka J. Biogeography and evolutionary history of the neotropical genus saltator (Aves: Thraupini) Journal of Biogeography. 40: 2180-2190. DOI: 10.1111/Jbi.12150  1
2012 Manthey JD, Klicka J, Spellman GM. Is gene flow promoting the reversal of pleistocene divergence in the Mountain Chickadee (Poecile gambeli)? Plos One. 7: e49218. PMID 23152877 DOI: 10.1371/Journal.Pone.0049218  1
2012 Smith BT, Bryson RW, Houston DD, Klicka J. An asymmetry in niche conservatism contributes to the latitudinal species diversity gradient in New World vertebrates. Ecology Letters. 15: 1318-25. PMID 22909289 DOI: 10.1111/J.1461-0248.2012.01855.X  1
2012 Smith BT, Amei A, Klicka J. Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama. Proceedings. Biological Sciences / the Royal Society. 279: 3520-6. PMID 22673352 DOI: 10.1098/Rspb.2012.0706  1
2012 van Els P, Cicero C, Klicka J. High latitudes and high genetic diversity: phylogeography of a widespread boreal bird, the gray jay (Perisoreus canadensis). Molecular Phylogenetics and Evolution. 63: 456-65. PMID 22321688 DOI: 10.1016/J.Ympev.2012.01.019  1
2012 Walstrom VW, Klicka J, Spellman GM. Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective. Molecular Ecology. 21: 907-20. PMID 22192449 DOI: 10.1111/J.1365-294X.2011.05384.X  1
2011 Manthey JD, Klicka J, Spellman GM. Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae). Molecular Ecology. 20: 4371-84. PMID 21933295 DOI: 10.1111/J.1365-294X.2011.05270.X  1
2011 Smith BT, Escalante P, Hernández Baños BE, Navarro-Sigüenza AG, Rohwer S, Klicka J. The role of historical and contemporary processes on phylogeographic structure and genetic diversity in the Northern Cardinal, Cardinalis cardinalis. Bmc Evolutionary Biology. 11: 136. PMID 21599972 DOI: 10.1186/1471-2148-11-136  1
2011 Manthey JD, Klicka J, Spellman GM. Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana). Molecular Phylogenetics and Evolution. 58: 502-12. PMID 21168520 DOI: 10.1016/J.Ympev.2010.12.003  1
2011 Van Els P, Canales-Del-Castillo R, Klicka J. Botteri's sparrow (Peucaea botterii) occurs in Northern Coahuila, Mexico Wilson Journal of Ornithology. 123: 414-416. DOI: 10.1676/10-172.1  1
2011 Miller MJ, Lelevier MJ, Bermingham E, Klicka JT, Escalante P, Winker K. Phylogeography of the Rufous-tailed Hummingbird (Amazilia tzacatl) Condor. 113: 806-816. DOI: 10.1525/Cond.2011.100226  1
2011 Klicka J, Spellman GM, Winker K, Chua V, Smith BT. A Phylogeographic and population genetic analysis of a widespread, sedentary North American bird: The Hairy Woodpecker (Picoides villosus) Auk. 128: 346-362. DOI: 10.1525/Auk.2011.10264  1
2011 Klicka J, Banks RC. A generic name for some sparrows (Aves: Emberizidae) Zootaxa. 67-68. DOI: 10.11646/Zootaxa.2793.1.7  1
2011 Herr CA, Sykes PW, Klicka J. Phylogeography of a vanishing North American songbird: The Painted Bunting (Passerina ciris) Conservation Genetics. 12: 1395-1410. DOI: 10.1007/S10592-011-0237-6  1
2010 Canales-del-Castillo R, Klicka J, Favela S, González-Rojas JI. Molecular phylogenetic analysis of an endangered Mexican sparrow: Spizella wortheni. Molecular Phylogenetics and Evolution. 57: 1319-22. PMID 20723611 DOI: 10.1016/J.Ympev.2010.08.009  1
2010 Lovette IJ, Pérez-Emán JL, Sullivan JP, Banks RC, Fiorentino I, Córdoba-Córdoba S, Echeverry-Galvis M, Barker FK, Burns KJ, Klicka J, Lanyon SM, Bermingham E. A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Molecular Phylogenetics and Evolution. 57: 753-70. PMID 20696258 DOI: 10.1016/J.Ympev.2010.07.018  1
2010 Miller MJ, Bermingham E, Klicka J, Escalante P, Winker K. Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect. Ecology Letters. 13: 576-86. PMID 20529101 DOI: 10.1111/J.1461-0248.2010.01454.X  1
2010 Barber BR, Klicka J. Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proceedings. Biological Sciences / the Royal Society. 277: 2675-81. PMID 20410037 DOI: 10.1098/Rspb.2010.0343  1
2010 Smith BT, Klicka J. The profound influence of the late Pliocene Panamanian uplift on the exchange, diversification, and distribution of new world birds Ecography. 33: 333-342. DOI: 10.1111/J.1600-0587.2009.06335.X  1
2009 Escalante P, Márquez-Valdelamar L, de la Torre P, Laclette JP, Klicka J. Evolutionary history of a prominent North American warbler clade: the Oporornis-Geothlypis complex. Molecular Phylogenetics and Evolution. 53: 668-78. PMID 19616636 DOI: 10.1016/J.Ympev.2009.07.014  1
2009 DaCosta JM, Spellman GM, Escalante P, Klicka J. A molecular systematic revision of two historically problematic songbird clades: Aimophila and Pipilo Journal of Avian Biology. 40: 206-216. DOI: 10.1111/J.1600-048X.2009.04514.X  1
2008 Voelker G, Klicka J. Systematics of Zoothera thrushes, and a synthesis of true thrush molecular systematic relationships. Molecular Phylogenetics and Evolution. 49: 377-81. PMID 18639642 DOI: 10.1016/J.Ympev.2008.06.014  1
2008 Weir JT, Bermingham E, Miller MJ, Klicka J, González MA. Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus). Molecular Phylogenetics and Evolution. 47: 650-64. PMID 18378470 DOI: 10.1016/J.Ympev.2008.02.004  1
2008 DaCosta JM, Klicka J. The Great American Interchange in birds: a phylogenetic perspective with the genus Trogon. Molecular Ecology. 17: 1328-43. PMID 18302692 DOI: 10.1111/J.1365-294X.2007.03647.X  1
2008 Miller MJ, Bermingham E, Klicka J, Escalante P, do Amaral FS, Weir JT, Winker K. Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher. Proceedings. Biological Sciences / the Royal Society. 275: 1133-42. PMID 18285279 DOI: 10.1098/Rspb.2008.0015  1
2008 Dacosta JM, Wehtje W, Klicka J. Historic genetic structuring and paraphyly within the great-tailed gracle Condor. 110: 170-177. DOI: 10.1525/Cond.2008.110.1.170  1
2008 Pagenkopp KM, Klicka J, Durrant KL, Garvin JC, Fleischer RC. Geographic variation in malarial parasite lineages in the common yellowthroat (Geothlypis trichas) Conservation Genetics. 9: 1577-1588. DOI: 10.1007/S10592-007-9497-6  1
2007 Klicka J, Burns K, Spellman GM. Defining a monophyletic Cardinalini: a molecular perspective. Molecular Phylogenetics and Evolution. 45: 1014-32. PMID 17920298 DOI: 10.1016/J.Ympev.2007.07.006  1
2007 Spellman GM, Klicka J. Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands. Molecular Ecology. 16: 1729-40. PMID 17402986 DOI: 10.1111/J.1365-294X.2007.03237.X  1
2007 Spellman GM, Riddle B, Klicka J. Phylogeography of the mountain chickadee (Poecile gambeli): diversification, introgression, and expansion in response to Quaternary climate change. Molecular Ecology. 16: 1055-68. PMID 17305860 DOI: 10.1111/J.1365-294X.2007.03199.X  1
2007 Cadena CD, Klicka J, Ricklefs RE. Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molecular Phylogenetics and Evolution. 44: 993-1016. PMID 17275342 DOI: 10.1016/J.Ympev.2006.12.012  1
2007 DaCosta JM, Spellman GM, Klicka J. Bilateral gynandromorphy in a White-ruffed Manakin (Corapipo altera) Wilson Journal of Ornithology. 119: 289-291. DOI: 10.1676/06-093.1  1
2007 Klicka J, Spellman GM. A molecular evaluation of the North American "grassland" sparrow clade Auk. 124: 537-551. DOI: 10.1642/0004-8038(2007)124[537:Ameotn]2.0.Co;2  1
2006 Spellman GM, Klicka J. Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea). Proceedings. Biological Sciences / the Royal Society. 273: 3057-63. PMID 17015345 DOI: 10.1098/Rspb.2006.3682  1
2006 Zink RM, Klicka J. The tempo of avian diversification: a comment on Johnson and Cicero. Evolution; International Journal of Organic Evolution. 60: 411-2; discussion 41. PMID 16610332 DOI: 10.1554/05-420.1  1
2005 Klicka J, Voelker G, Spellman GM. A molecular phylogenetic analysis of the "true thrushes" (Aves: Turdinae). Molecular Phylogenetics and Evolution. 34: 486-500. PMID 15683924 DOI: 10.1016/J.Ympev.2004.10.001  1
2005 Klicka J, Voelker G, Spellman GM. Corrigendum to “A molecular phylogenetic analysis of the ‘true thrushes’ (Aves: Turdinae)” [Mol. Phylogenet. Evol. 34 (2005) 486–500] Molecular Phylogenetics and Evolution. 35: 725. DOI: 10.1016/J.Ympev.2005.03.001  0.44
2004 Zink RM, Klicka J, Barber BR. The tempo of avian diversification during the Quaternary. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 215-9; discussion 21. PMID 15101578 DOI: 10.1098/Rstb.2003.1392  1
2003 Klicka J, Zink RM, Winker K. Longspurs and snow buntings: phylogeny and biogeography of a high-latitude clade (Calcarius). Molecular Phylogenetics and Evolution. 26: 165-75. PMID 12565028 DOI: 10.1016/S1055-7903(02)00360-3  1
2001 Klicka J, Zink RM, Barlow JC, McGillivray WB, Doyle TJ. The taxonomic rank of Spizella taverneri: A response to Mayr and Johnson Condor. 103: 420-422. DOI: 10.1650/0010-5422(2001)103[0420:Ttrost]2.0.Co;2  1
2001 Klicka J, Fry AJ, Zink RM, Thompson CW. A cytochrome-b perspective on Passerina bunting relationships Auk. 118: 611-623. DOI: 10.1642/0004-8038(2001)118[0610:Acbpop]2.0.Co;2  1
2000 Klicka J, Johnson KP, Lanyon SM. New world nine-primaried oscine relationships: Constructing a mitochondrial DNA framework Auk. 117: 321-336. DOI: 10.1642/0004-8038(2000)117[0321:Nwnpor]2.0.Co;2  1
1999 Zink RM, Dittmann DL, Klicka J, Blackwell-Rago RC. Evolutionary patterns of morphometrics, allozymes, and mitochondrial DNA in thrashers (genus Toxostoma) Auk. 116: 1021-1038. DOI: 10.2307/4089682  1
1999 Klicka J, Zink RM, Barlow JC, Mcgillivray WB, Doyle TJ. Evidence supporting the recent origin and species status of the Timberline Sparrow Condor. 101: 577-588. DOI: 10.2307/1370187  1
1999 Klicka J, Zink RM. Pleistocene effects on North American songbird evolution Proceedings of the Royal Society B: Biological Sciences. 266: 695-700. DOI: 10.1098/Rspb.1999.0691  1
1997 Klicka J, Zink RM. The importance of recent ice ages in speciation: A failed paradigm Science. 277: 1666-1669. DOI: 10.1126/Science.277.5332.1666  1
1996 Winker K, Klicka JT, Voelker G. Sexual size dimorphism in birds from Southern Veracruz, Mexico. II. Thryothorus maculipectus and Henicorhina [leucosticta] prostheleuca Journal of Field Ornithology. 67: 236-251.  1
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