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Stacey E. Jacobsen, Ph.D. - Publications

Affiliations: 
2011 Business Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Management Business Administration, Finance
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kojima-Kita K, Kuramochi-Miyagawa S, Nakayama M, Miyata H, Jacobsen SE, Ikawa M, Koseki H, Nakano T. MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells. Scientific Reports. 11: 20472. PMID 34650118 DOI: 10.1038/s41598-021-98940-7  0.3
2021 Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nature Communications. 12: 4292. PMID 34257299 DOI: 10.1038/s41467-021-24553-3  0.325
2021 Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. CRISPR-based targeting of DNA methylation in by a bacterial CG-specific DNA methyltransferase. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074795 DOI: 10.1073/pnas.2125016118  0.321
2021 Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nature Communications. 12: 3130. PMID 34035251 DOI: 10.1038/s41467-021-23346-y  0.304
2021 Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. DNA methylation-linked chromatin accessibility affects genomic architecture in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33495321 DOI: 10.1073/pnas.2023347118  0.31
2020 Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis Epigenomes. 4: 9. DOI: 10.3390/epigenomes4020009  0.307
2019 Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. PMID 30739798 DOI: 10.1016/J.Cell.2019.01.029  0.305
2018 Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, ... ... Jacobsen SE, et al. A DNA methylation reader complex that enhances gene transcription. Science (New York, N.Y.). 362: 1182-1186. PMID 30523112 DOI: 10.1126/Science.Aar7854  0.313
2018 Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30150382 DOI: 10.1073/Pnas.1809841115  0.311
2016 Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. DNA methylome of the 20-gigabase Norway spruce genome. Proceedings of the National Academy of Sciences of the United States of America. 113: E8106-E8113. PMID 27911846 DOI: 10.1073/Pnas.1618019113  0.309
2016 Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, ... Jacobsen SE, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113  0.316
2016 Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, ... ... Jacobsen SE, et al. MTHFD1 controls DNA methylation in Arabidopsis. Nature Communications. 7: 11640. PMID 27291711 DOI: 10.1038/Ncomms11640  0.304
2016 Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. Plos Genetics. 12: e1005998. PMID 27171361 DOI: 10.1371/Journal.Pgen.1005998  0.32
2016 Bhattacharya U, Jacobsen SE. The share repurchase announcement puzzle: Theory and evidence Review of Finance. 20: 725-758. DOI: 10.1093/Rof/Rfv020  0.348
2015 Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proceedings of the National Academy of Sciences of the United States of America. 112: 13729-34. PMID 26483493 DOI: 10.1073/Pnas.1519067112  0.302
2015 Du J, Johnson LM, Jacobsen SE, Patel DJ. DNA methylation pathways and their crosstalk with histone methylation. Nature Reviews. Molecular Cell Biology. 16: 519-32. PMID 26296162 DOI: 10.1038/Nrm4043  0.306
2014 Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 17666-71. PMID 25425661 DOI: 10.1073/Pnas.1420515111  0.307
2014 Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proceedings of the National Academy of Sciences of the United States of America. 111: 7474-9. PMID 24799676 DOI: 10.1073/Pnas.1406611111  0.335
2014 Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 507: 124-128. PMID 24463519 DOI: 10.1038/Nature12931  0.309
2014 Widman N, Feng S, Jacobsen SE, Pellegrini M. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 9: 236-42. PMID 24169618 DOI: 10.4161/Epi.26869  0.304
2013 Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 9: e1003946. PMID 24244201 DOI: 10.1371/Journal.Pgen.1003946  0.317
2013 Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proceedings of the National Academy of Sciences of the United States of America. 110: 12750-5. PMID 23852726 DOI: 10.1073/Pnas.1310735110  0.327
2013 Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 498: 385-9. PMID 23636332 DOI: 10.1038/Nature12178  0.326
2013 Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 152: 352-64. PMID 23313553 DOI: 10.1016/J.Cell.2012.10.054  0.302
2012 Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. Plos Genetics. 8: e1003062. PMID 23209430 DOI: 10.1371/Journal.Pgen.1003062  0.328
2012 Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. Plos Genetics. 8: e1002995. PMID 23071452 DOI: 10.1371/Journal.Pgen.1002995  0.325
2012 Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 8374-81. PMID 22592791 DOI: 10.1073/Pnas.1206638109  0.31
2012 Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, ... ... Jacobsen SE, et al. MORC family ATPases required for heterochromatin condensation and gene silencing. Science (New York, N.Y.). 336: 1448-51. PMID 22555433 DOI: 10.1126/Science.1221472  0.307
2012 Ausin I, Greenberg MV, Li CF, Jacobsen SE. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 7: 29-33. PMID 22274613 DOI: 10.4161/Epi.7.1.18782  0.304
2011 Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 6: 344-54. PMID 21150311 DOI: 10.4161/Epi.6.3.14242  0.32
2010 Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. Embo Reports. 11: 950-5. PMID 21052090 DOI: 10.1038/Embor.2010.158  0.307
2010 Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science (New York, N.Y.). 330: 622-7. PMID 21030646 DOI: 10.1126/Science.1190614  0.314
2010 Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews. Genetics. 11: 204-20. PMID 20142834 DOI: 10.1038/Nrg2719  0.319
2009 Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nature Structural & Molecular Biology. 16: 763-8. PMID 19503079 DOI: 10.1038/Nsmb.1611  0.304
2008 Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. Plos Genetics. 4: e1000280. PMID 19043555 DOI: 10.1371/Journal.Pgen.1000280  0.309
2008 Henderson IR, Jacobsen SE. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes & Development. 22: 1597-606. PMID 18559476 DOI: 10.1101/Gad.1667808  0.336
2007 Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature. 447: 418-24. PMID 17522675 DOI: 10.1038/Nature05917  0.304
2006 Zhang X, Jacobsen SE. Genetic analyses of DNA methyltransferases in Arabidopsis thaliana. Cold Spring Harbor Symposia On Quantitative Biology. 71: 439-47. PMID 17381326 DOI: 10.1101/sqb.2006.71.047  0.344
2006 Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. Plos Biology. 4: e363. PMID 17105345 DOI: 10.1371/Journal.Pbio.0040363  0.313
2006 Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003  0.318
2006 Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. Plos Genetics. 2: e83. PMID 16741558 DOI: 10.1371/Journal.Pgen.0020083  0.34
2005 Chan SW, Henderson IR, Jacobsen SE. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Reviews. Genetics. 6: 351-60. PMID 15861207 DOI: 10.1038/Nrg1601  0.321
2004 Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (New York, N.Y.). 303: 521-3. PMID 14631047 DOI: 10.1126/Science.1089835  0.315
2003 Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Current Biology : Cb. 13: 421-6. PMID 12620192 DOI: 10.1016/S0960-9822(03)00106-4  0.309
2003 Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (New York, N.Y.). 299: 716-9. PMID 12522258 DOI: 10.1126/Science.1079695  0.314
2002 Cao X, Jacobsen SE. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proceedings of the National Academy of Sciences of the United States of America. 99: 16491-8. PMID 12151602 DOI: 10.1073/Pnas.162371599  0.307
2000 Cao X, Springer NM, Muszynski MG, Phillips RL, Kaeppler S, Jacobsen SE. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 97: 4979-84. PMID 10781108 DOI: 10.1073/Pnas.97.9.4979  0.303
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