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Supriyo De, Ph.D. - Publications

Affiliations: 
2006 Howard University 
Area:
Molecular Biology, Genetics, Toxicology
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chaudhary R, Muys BR, Grammatikakis I, De S, Abdelmohsen K, Li XL, Zhu Y, Daulatabad SV, Tsitsipatis D, Meltzer PS, Gorospe M, Janga SC, Lal A. A circular RNA from the locus controls cell cycle progression by suppressing p53 levels. Molecular and Cellular Biology. PMID 32041821 DOI: 10.1128/Mcb.00473-19  0.367
2020 Pandey PR, Yang JH, Tsitsipatis D, Panda AC, Noh JH, Kim KM, Munk R, Nicholson T, Hanniford D, Argibay D, Yang X, Martindale JL, Chang MW, Jones SW, Hernando E, ... ... De S, et al. circSamd4 represses myogenic transcriptional activity of PUR proteins. Nucleic Acids Research. PMID 31980816 DOI: 10.1093/Nar/Gkaa035  0.319
2019 Casella G, Munk R, Kim KM, Piao Y, De S, Abdelmohsen K, Gorospe M. Transcriptome signature of cellular senescence. Nucleic Acids Research. PMID 31612919 DOI: 10.1093/Nar/Gkz879  0.393
2019 Pandey PR, Munk R, Kundu G, De S, Abdelmohsen K, Gorospe M. Methods for analysis of circular RNAs. Wiley Interdisciplinary Reviews. Rna. e1566. PMID 31489773 DOI: 10.1002/Wrna.1566  0.302
2019 Lee JH, Demarest TG, Babbar M, Kim EW, Okur MN, De S, Croteau DL, Bohr VA. Cockayne syndrome group B deficiency reduces H3K9me3 chromatin remodeler SETDB1 and exacerbates cellular aging. Nucleic Acids Research. PMID 31276581 DOI: 10.1093/Nar/Gkz568  0.328
2019 Chatterjee B, Roy P, Sarkar UA, Zhao M, Ratra Y, Singh A, Chawla M, De S, Gomes J, Sen R, Basak S. Immune Differentiation Regulator p100 Tunes NF-κB Responses to TNF. Frontiers in Immunology. 10: 997. PMID 31134075 DOI: 10.3389/Fimmu.2019.00997  0.311
2019 Noh JH, Kim KM, Pandey PR, Hooten NN, Munk R, Kundu G, De S, Martindale JL, Yang X, Evans MK, Abdelmohsen K, Gorospe M. Loss of RNA-binding protein GRSF1 activates mTOR to elicit a proinflammatory transcriptional program. Nucleic Acids Research. PMID 30753671 DOI: 10.1093/Nar/Gkz082  0.321
2018 Kumari G, Gerasimova T, Du H, De S, Wood WH, Becker KG, Sen R. Misregulation of the Locus in Thymocytes. Frontiers in Immunology. 9: 2426. PMID 30483245 DOI: 10.3389/Fimmu.2018.02426  0.346
2018 Lee SK, Xue Y, Shen W, Zhang Y, Joo Y, Ahmad M, Chinen M, Ding Y, Ku WL, De S, Lehrmann E, Becker KG, Lei EP, Zhao K, Zou S, et al. Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila. Nature Communications. 9: 4946. PMID 30470739 DOI: 10.1038/S41467-018-07101-4  0.331
2018 Zhao M, Joy J, Zhou W, De S, Wood WH, Becker KG, Ji H, Sen R. Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation. Plos Biology. 16: e2006347. PMID 30199532 DOI: 10.1371/Journal.Pbio.2006347  0.316
2018 Dluzen DF, Noren Hooten N, De S, Wood WH, Zhang Y, Becker KG, Zonderman AB, Tanaka T, Ferrucci L, Evans MK. Extracellular RNA profiles with human age. Aging Cell. e12785. PMID 29797538 DOI: 10.1111/Acel.12785  0.313
2017 Panda AC, De S, Grammatikakis I, Munk R, Yang X, Piao Y, Dudekula DB, Abdelmohsen K, Gorospe M. High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs. Nucleic Acids Research. PMID 28444238 DOI: 10.1093/Nar/Gkx297  0.328
2017 Abdelmohsen K, Panda AC, Munk R, Grammatikakis I, Dudekula DB, De S, Kim J, Noh JH, Kim KM, Martindale JL, Gorospe M. Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1. Rna Biology. 0. PMID 28080204 DOI: 10.1080/15476286.2017.1279788  0.331
2016 Panda AC, Grammatikakis I, Kim KM, De S, Martindale JL, Munk R, Yang X, Abdelmohsen K, Gorospe M. Identification of senescence-associated circular RNAs (SAC-RNAs) reveals senescence suppressor CircPVT1. Nucleic Acids Research. PMID 27928058 DOI: 10.1093/Nar/Gkw1201  0.384
2016 Scheibye-Knudsen M, Tseng A, Borch Jensen M, Scheibye-Alsing K, Fang EF, Iyama T, Bharti SK, Marosi K, Froetscher L, Kassahun H, Eckley DM, Maul RW, Bastian P, De S, Ghosh S, et al. Cockayne syndrome group A and B proteins converge on transcription-linked resolution of non-B DNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791127 DOI: 10.1073/Pnas.1610198113  0.307
2016 Noh JH, Kim KM, Abdelmohsen K, Yoon JH, Panda AC, Munk R, Kim J, Curtis J, Moad CA, Wohler CM, Indig FE, de Paula W, Dudekula DB, De S, Piao Y, et al. HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP. Genes & Development. PMID 27198227 DOI: 10.1101/Gad.276022.115  0.316
2016 Kim J, Abdelmohsen K, Yang X, De S, Grammatikakis I, Noh JH, Gorospe M. LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR. Nucleic Acids Research. PMID 26819413 DOI: 10.1093/Nar/Gkw017  0.361
2016 Panda AC, Abdelmohsen K, Martindale JL, Di Germanio C, Yang X, Grammatikakis I, Noh JH, Zhang Y, Lehrmann E, Dudekula DB, De S, Becker KG, White EJ, Wilson GM, de Cabo R, et al. Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis. Nucleic Acids Research. PMID 26819411 DOI: 10.1093/Nar/Gkw023  0.341
2016 Montefiori L, Wuerffel R, Roqueiro D, Lajoie B, Guo C, Gerasimova T, De S, Wood W, Becker KG, Dekker J, Liang J, Sen R, Kenter AL. Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire. Cell Reports. PMID 26804913 DOI: 10.1016/J.Celrep.2015.12.083  0.325
2015 Dudekula DB, Panda AC, Grammatikakis I, De S, Abdelmohsen K, Gorospe M. CircInteractome: a web tool for exploring circular RNAs and their interacting proteins and microRNAs. Rna Biology. 1-25. PMID 26669964 DOI: 10.1080/15476286.2015.1128065  0.305
2015 Yoon JH, Jo MH, White EJ, De S, Hafner M, Zucconi BE, Abdelmohsen K, Martindale JL, Yang X, Wood WH, Shin YM, Song JJ, Tuschl T, Becker KG, Wilson GM, et al. AUF1 promotes let-7b loading on Argonaute 2. Genes & Development. 29: 1599-604. PMID 26253535 DOI: 10.1101/Gad.263749.115  0.342
2015 Ohta N, Ishiguro S, Kawabata A, Uppalapati D, Pyle M, Troyer D, De S, Zhang Y, Becker KG, Tamura M. Human umbilical cord matrix mesenchymal stem cells suppress the growth of breast cancer by expression of tumor suppressor genes. Plos One. 10: e0123756. PMID 25942583 DOI: 10.1371/Journal.Pone.0123756  0.347
2014 Yoon JH, De S, Srikantan S, Abdelmohsen K, Grammatikakis I, Kim J, Kim KM, Noh JH, White EJ, Martindale JL, Yang X, Kang MJ, Wood WH, Noren Hooten N, Evans MK, et al. PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity. Nature Communications. 5: 5248. PMID 25366541 DOI: 10.1038/Ncomms6248  0.335
2013 Cadet JL, Jayanthi S, McCoy MT, Ladenheim B, Saint-Preux F, Lehrmann E, De S, Becker KG, Brannock C. Genome-wide profiling identifies a subset of methamphetamine (METH)-induced genes associated with METH-induced increased H4K5Ac binding in the rat striatum. Bmc Genomics. 14: 545. PMID 23937714 DOI: 10.1186/1471-2164-14-545  0.312
2013 Abdelmohsen K, Panda A, Kang MJ, Xu J, Selimyan R, Yoon JH, Martindale JL, De S, Wood WH, Becker KG, Gorospe M. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. Aging Cell. 12: 890-900. PMID 23758631 DOI: 10.1111/Acel.12115  0.327
2013 Ohta N, Ishiguro S, Kawabata A, Uppalapati D, Pyle M, Troyer D, De S, Zhang Y, Becker KG, Tamura M. Abstract 220: Human umbilical cord matrix-derived stem cells control tumor growth by tumor suppressor gene expression. Cancer Research. 73: 220-220. DOI: 10.1158/1538-7445.Am2013-220  0.35
2012 Yoon JH, Abdelmohsen K, Srikantan S, Yang X, Martindale JL, De S, Huarte M, Zhan M, Becker KG, Gorospe M. LincRNA-p21 suppresses target mRNA translation. Molecular Cell. 47: 648-55. PMID 22841487 DOI: 10.1016/J.Molcel.2012.06.027  0.324
2011 De S, Wurster AL, Precht P, Wood WH, Becker KG, Pazin MJ. Dynamic BRG1 recruitment during T helper differentiation and activation reveals distal regulatory elements. Molecular and Cellular Biology. 31: 1512-27. PMID 21262765 DOI: 10.1128/Mcb.00920-10  0.344
2010 Ghosh S, De S, Chen Y, Sutton DC, Ayorinde FO, Dutta SK. Polychlorinated biphenyls (PCB-153) and (PCB-77) absorption in human liver (HepG2) and kidney (HK2) cells in vitro: PCB levels and cell death. Environment International. 36: 893-900. PMID 20723988 DOI: 10.1016/J.Envint.2010.06.010  0.64
2010 De S, Ghosh S, Chatterjee R, Chen YQ, Moses L, Kesari A, Hoffman EP, Dutta SK. PCB congener specific oxidative stress response by microarray analysis using human liver cell line. Environment International. 36: 907-17. PMID 20638727 DOI: 10.1016/J.Envint.2010.05.011  0.629
2008 Dutta SK, Ghosh S, De S, Hoffman EP. CYP1A1 and MT1K are congener specific biomarker genes for liver diseases induced by PCBs. Environmental Toxicology and Pharmacology. 25: 218-21. PMID 21783860 DOI: 10.1016/J.Etap.2007.10.018  0.577
2007 Ghosh S, De S, Dutta SK. Altered protein expressions in chronic PCB-153-induced human liver (HepG2) cells. International Journal of Toxicology. 26: 203-12. PMID 17564901 DOI: 10.1080/10915810701352648  0.565
2006 De S, Ghosh S, Dutta SK. Congener specific polychlorinated biphenyl metabolism by human intestinal microbe Clostridium species: Comparison with human liver cell line-HepG2. Indian Journal of Microbiology. 46: 199-207. PMID 25838614  0.491
2006 Chen YQ, De S, Ghosh S, Dutta SK. Congener-specific polychlorinated biphenyl-induced cell death in human kidney cells in vitro: potential role of caspase. International Journal of Toxicology. 25: 341-7. PMID 16940006 DOI: 10.1080/10915810600840859  0.624
2006 De S, Perkins M, Dutta SK. Nitrate reductase gene involvement in hexachlorobiphenyl dechlorination by Phanerochaete chrysosporium. Journal of Hazardous Materials. 135: 350-4. PMID 16406292 DOI: 10.1016/J.Jhazmat.2005.11.073  0.524
2005 Perkins MW, De S, Frederick L, Dutta SK. Ligninolytic and Nonligninolytic mineralization of trinitrotoluene by several white rot basidiomycetes Bioremediation Journal. 9: 77-85. DOI: 10.1080/10889860500276391  0.495
2004 De S, Pramanik SK, Williams AL, Dutta SK. Toxicity of Polychlorobiphenyls and its Bioremediation International Journal of Human Genetics. 4: 281-290. DOI: 10.1080/09723757.2004.11885907  0.526
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