Eric J. Peatman, Ph.D. - Publications

Affiliations: 
2007 Auburn University, Auburn, AL, United States 
Area:
Fisheries and Aquaculture Agriculture, Genetics

119 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhao H, Beck B, Fuller A, Peatman E. EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses. Plos One. 15: e0232110. PMID 32330179 DOI: 10.1371/Journal.Pone.0232110  0.6
2020 Myers JN, Dyce PW, Chatakondi NG, Gorman SA, Quiniou SMA, Su B, Peatman E, Dunham RA, Butts IAE. Analysis of specific mRNA gene expression profiles as markers of egg and embryo quality for hybrid catfish aquaculture. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 110675. PMID 32081738 DOI: 10.1016/J.Cbpa.2020.110675  0.6
2020 Thongda W, Lewis M, Zhao H, Bowen B, Lutz-Carrillo DJ, Peoples BK, Peatman E. Species-diagnostic SNP markers for the black basses (Micropterus spp.): a new tool for black bass conservation and management Conservation Genetics Resources. 12: 319-328. DOI: 10.1007/S12686-019-01109-8  0.6
2019 Zhang H, Hall N, Goertzen LR, Chen CY, Peatman E, Patel J, McElroy JS. Transcriptome Analysis Reveals Unique Relationships Among Species and Heritage of . G3 (Bethesda, Md.). PMID 31010823 DOI: 10.1534/G3.119.400214  0.64
2019 Declercq AM, Cai W, Naranjo E, Thongda W, Eeckhaut V, Bauwens E, Arias C, De La Fuente L, Beck BH, Lange MD, Peatman E, Haesebrouck F, Aerts J, Decostere A. Evidence that the stress hormone cortisol regulates biofilm formation differently among Flavobacterium columnare isolates. Veterinary Research. 50: 24. PMID 30971289 DOI: 10.1186/S13567-019-0641-3  0.56
2019 Zhang H, Hall N, Goertzen LR, Bi B, Chen CY, Peatman E, Lowe EK, Patel J, McElroy JS. Development of a goosegrass (Eleusine indica) draft genome and application to weed science research. Pest Management Science. PMID 30851005 DOI: 10.1002/Ps.5389  0.64
2019 Beck BH, Yildirim-Aksoy M, Shoemaker CA, Fuller SA, Peatman E. Antimicrobial activity of the biopolymer chitosan against Streptococcus iniae. Journal of Fish Diseases. PMID 30644117 DOI: 10.1111/Jfd.12938  0.56
2019 Mohammed HH, Brown TL, Beck BH, Yildirim-Aksoy M, Eljack RM, Peatman E. The effects of dietary inclusion of a Saccharomyces cerevisiae fermentation product in a commercial catfish ration on growth, immune readiness, and columnaris disease susceptibility Journal of Applied Aquaculture. 31: 193-209. DOI: 10.1080/10454438.2018.1499576  0.56
2018 Zhao H, Fuller A, Thongda W, Mohammed H, Abernathy J, Beck B, Peatman E. SNP panel development for genetic management of wild and domesticated white bass (Morone chrysops). Animal Genetics. PMID 30426519 DOI: 10.1111/Age.12747  0.8
2018 Schrandt M, Powers S, Rikard FS, Thongda W, Peatman E. Short-term low salinity mitigates effects of oil and dispersant on juvenile eastern oysters: A laboratory experiment with implications for oil spill response activities. Plos One. 13: e0203485. PMID 30192837 DOI: 10.1371/Journal.Pone.0203485  0.48
2018 Shoemaker CA, Mohammed HH, Bader TJ, Peatman E, Beck BH. Immersion vaccination with an inactivated virulent Aeromonas hydrophila bacterin protects hybrid catfish (Ictalurus punctatus X Ictalurus furcatus) from motile Aeromonas septicemia. Fish & Shellfish Immunology. 82: 239-242. PMID 30130658 DOI: 10.1016/J.Fsi.2018.08.040  0.56
2018 Gardner S, Assis VR, Zhao H, Gomes FR, Peatman E, Mendonça MT. Differential gene expression to an LPS challenge in relation to exogenous corticosterone in the invasive cane toad (Rhinella marina). Developmental and Comparative Immunology. PMID 30030104 DOI: 10.1016/J.Dci.2018.07.016  0.6
2018 Shoemaker CA, LaFrentz BR, Peatman E, Beck BH. Influence of native catfish mucus on Flavobacterium columnare growth and proteolytic activity. Journal of Fish Diseases. PMID 29893005 DOI: 10.1111/Jfd.12833  0.56
2018 Mohammed HH, Peatman E. Winter kill in intensively stocked channel catfish (Ictalurus punctatus): Coinfection with Aeromonas veronii, Streptococcus parauberis and Shewanella putrefaciens. Journal of Fish Diseases. PMID 29882217 DOI: 10.1111/Jfd.12827  0.4
2018 Onming S, Thongda W, Li C, Sawatdichaikul O, McMillan N, Klinbunga S, Peatman E, Poompuang S. Bioinformatics characterization of a cathepsin B transcript from the giant river prawn, Macrobrachium rosenbergii: Homology modeling and expression analysis after Aeromonas hydrophila infection. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. PMID 29649577 DOI: 10.1016/J.Cbpb.2018.04.002  0.6
2018 Thongda W, Zhao H, Zhang D, Jescovitch LN, Liu M, Guo X, Schrandt M, Powers SP, Peatman E. Development of SNP Panels as a New Tool to Assess the Genetic Diversity, Population Structure, and Parentage Analysis of the Eastern Oyster (Crassostrea virginica). Marine Biotechnology (New York, N.Y.). PMID 29532334 DOI: 10.1007/S10126-018-9803-Y  0.6
2018 Shang M, Su B, Perera DA, Alsaqufi A, Lipke EA, Cek S, Dunn DA, Qin Z, Peatman E, Dunham RA. Testicular germ line cell identification, isolation, and transplantation in two North American catfish species. Fish Physiology and Biochemistry. PMID 29357082 DOI: 10.1007/S10695-018-0467-3  0.6
2018 Peatman E, Mohammed H, Kirby A, Shoemaker CA, Yildirim-Aksoy M, Beck BH. Mechanisms of pathogen virulence and host susceptibility in virulent Aeromonas hydrophila infections of channel catfish (Ictalurus punctatus) Aquaculture. 482: 1-8. DOI: 10.1016/J.Aquaculture.2017.09.019  0.56
2018 Yildirim‐Aksoy M, Mohammed H, Peatman E, Fuller SA, Beck BH. Influence of Kaolin Clay on Aeromonas hydrophila Growth, Chemotaxis, and Virulence to Channel Catfish North American Journal of Aquaculture. 80: 427-435. DOI: 10.1002/Naaq.10059  0.56
2017 Zhang D, Beck BH, Mohammed H, Zhao H, Thongda W, Ye Z, Zeng Q, Shoemaker C, Fuller SA, Peatman E. l-rhamnose-binding lectins (RBLs) in Nile tilapia, Oreochromis niloticus: Characterization and expression profiling in mucosal tissues. Fish & Shellfish Immunology. PMID 29133252 DOI: 10.1016/J.Fsi.2017.11.015  0.6
2017 Zhang D, Thongda W, Li C, Zhao H, Beck BH, Mohammed H, Arias C, Peatman E. More than just antibodies: Protective mechanisms of a mucosal vaccine against fish pathogen Flavobacterium columnare. Fish & Shellfish Immunology. PMID 28989091 DOI: 10.1016/J.Fsi.2017.10.001  0.6
2017 Zhong X, Wang X, Zhou T, Jin Y, Tan S, Jiang C, Geng X, Li N, Shi H, Zeng Q, Yang Y, Yuan Z, Bao L, Liu S, Tian C, ... Peatman E, et al. Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish. Marine Biotechnology (New York, N.Y.). PMID 28601969 DOI: 10.1007/S10126-017-9757-5  0.92
2017 Lange MD, Farmer BD, Declercq AM, Peatman E, Decostere A, Beck BH. Sickeningly Sweet: L-rhamnose stimulates Flavobacterium columnare biofilm formation and virulence. Journal of Fish Diseases. PMID 28581211 DOI: 10.1111/Jfd.12629  0.56
2017 Abdelrahman H, ElHady M, Alcivar-Warren A, Allen S, Al-Tobasei R, Bao L, Beck B, Blackburn H, Bosworth B, Buchanan J, Chappell J, Daniels W, Dong S, Dunham R, ... ... Peatman E, et al. Erratum to: Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research. Bmc Genomics. 18: 235. PMID 28302067 DOI: 10.1186/S12864-017-3614-9  0.92
2017 Abdelrahman H, ElHady M, Alcivar-Warren A, Allen S, Al-Tobasei R, Bao L, Beck B, Blackburn H, Bosworth B, Buchanan J, Chappell J, Daniels W, Dong S, Dunham R, ... ... Peatman E, et al. Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research. Bmc Genomics. 18: 191. PMID 28219347 DOI: 10.1186/S12864-017-3557-1  0.92
2017 Zhou Y, Zhang D, Peatman E, Rhodes MA, Liu J, Davis DA. Effects of various levels of dietary copper supplementation with copper sulfate and copper hydroxychloride on Pacific white shrimp Litopenaeus vannamei performance and microbial communities Aquaculture. 476: 94-105. DOI: 10.1016/J.Aquaculture.2017.04.016  0.6
2016 Zhang D, Beck BH, Lange M, Zhao H, Thongda W, Ye Z, Li C, Peatman E. Impact of oral and waterborne administration of rhamnolipids on the susceptibility of channel catfish (Ictalurus punctatus) to Flavobacterium columnare infection. Fish & Shellfish Immunology. PMID 27818340 DOI: 10.1016/J.Fsi.2016.10.053  0.6
2016 Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, ... ... Peatman E, et al. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. Nature Communications. 7: 11757. PMID 27249958 DOI: 10.1038/Ncomms11757  0.92
2016 Beck BH, Fuller SA, Li C, Green BW, Zhao H, Rawles SD, Webster CD, Peatman E. Hepatic transcriptomic and metabolic responses of hybrid striped bass (Morone saxatilis×Morone chrysops) to acute and chronic hypoxic insult. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 18: 1-9. PMID 26851735 DOI: 10.1016/J.Cbd.2016.01.005  0.92
2016 Zhou S, Zhao H, Thongda W, Zhang D, Su B, Yu D, Peatman E, Li C. Galectins in channel catfish, Ictalurus punctatus: Characterization and expression profiling in mucosal tissues. Fish & Shellfish Immunology. PMID 26767746 DOI: 10.1016/J.Fsi.2016.01.005  0.92
2016 Chen A, Wang R, Liu S, Peatman E, Sun L, Bao L, Jiang C, Li C, Li Y, Zeng Q, Liu Z. Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish. Molecular Genetics and Genomics : Mgg. PMID 26747053 DOI: 10.1007/S00438-015-1162-Z  0.92
2016 Beck BH, Li C, Farmer BD, Barnett LM, Lange MD, Peatman E. A comparison of high- and low-virulence Flavobacterium columnare strains reveals differences in iron acquisition components and responses to iron restriction. Journal of Fish Diseases. 39: 259-68. PMID 25704170 DOI: 10.1111/Jfd.12343  0.6
2015 Peatman E, Lange M, Zhao H, Beck BH. Physiology and immunology of mucosal barriers in catfish (Ictalurus spp.). Tissue Barriers. 3: e1068907. PMID 26716071 DOI: 10.1080/21688370.2015.1068907  0.92
2015 Dong X, Ye Z, Song L, Su B, Zhao H, Peatman E, Li C. Expression profile analysis of two Cathepsin S in channel catfish (Ictalurus punctatus) mucosal tissues following bacterial challenge. Fish & Shellfish Immunology. PMID 26626584 DOI: 10.1016/J.Fsi.2015.11.030  0.92
2015 Li C, Song L, Tan F, Su B, Zhang D, Zhao H, Peatman E. Identification and mucosal expression analysis of cathepsin B in channel catfish (Ictalurus punctatus) following bacterial challenge. Fish & Shellfish Immunology. 47: 751-757. PMID 26497091 DOI: 10.1016/J.Fsi.2015.10.028  0.92
2015 Wang R, Song L, Su B, Zhao H, Zhang D, Peatman E, Li C. Mucosal expression signatures of two Cathepsin L in channel catfish (Ictalurus punctatus) following bacterial challenge. Fish & Shellfish Immunology. PMID 26434716 DOI: 10.1016/J.Fsi.2015.09.047  0.92
2015 Su B, Shang M, Grewe PM, Patil JG, Peatman E, Perera DA, Cheng Q, Li C, Weng CC, Li P, Liu Z, Dunham RA. Suppression and restoration of primordial germ cell marker gene expression in channel catfish, Ictalurus punctatus, using knockdown constructs regulated by copper transport protein gene promoters: Potential for reversible transgenic sterilization. Theriogenology. PMID 26341409 DOI: 10.1016/J.Theriogenology.2015.07.037  0.92
2015 Shang M, Su B, Lipke EA, Perera DA, Li C, Qin Z, Li Y, Dunn DA, Cek S, Peatman E, Dunham RA. Spermatogonial stem cells specific marker identification in channel catfish, Ictalurus punctatus and blue catfish, I. furcatus. Fish Physiology and Biochemistry. PMID 26251285 DOI: 10.1007/S10695-015-0106-1  0.92
2015 Ren Y, Zhao H, Su B, Peatman E, Li C. Expression profiling analysis of immune-related genes in channel catfish (Ictalurus punctatus) skin mucus following Flavobacterium columnare challenge. Fish & Shellfish Immunology. 46: 537-542. PMID 26220643 DOI: 10.1016/J.Fsi.2015.07.021  0.6
2015 Zhao H, Li C, Beck BH, Zhang R, Thongda W, Davis DA, Peatman E. Impact of feed additives on surface mucosal health and columnaris susceptibility in channel catfish fingerlings, Ictalurus punctatus. Fish & Shellfish Immunology. PMID 26164837 DOI: 10.1016/J.Fsi.2015.07.005  0.92
2015 Peterson BC, Peatman E, Ourth DD, Waldbieser GC. Effects of a phytogenic feed additive on growth performance, susceptibility of channel catfish to Edwardsiella ictaluri and levels of mannose binding lectin. Fish & Shellfish Immunology. 44: 21-5. PMID 25659231 DOI: 10.1016/J.Fsi.2015.01.027  0.92
2015 Su B, Shang M, Li C, Perera DA, Pinkert CA, Irwin MH, Peatman E, Grewe P, Patil JG, Dunham RA. Effects of transgenic sterilization constructs and their repressor compounds on hatch, developmental rate and early survival of electroporated channel catfish embryos and fry. Transgenic Research. 24: 333-52. PMID 25367204 DOI: 10.1007/S11248-014-9846-4  0.92
2015 Li C, Gowan S, Anil A, Beck BH, Thongda W, Kucuktas H, Kaltenboeck L, Peatman E. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus) Molecular Ecology Resources. 15: 395-404. PMID 25047482 DOI: 10.1111/1755-0998.12308  0.92
2015 Beck BH, Barnett LM, Farmer BD, Peatman E, Carter D. Kaolinitic clay protects against Flavobacterium columnare infection in channel catfish Ictalurus punctatus (Rafinesque). Journal of Fish Diseases. 38: 241-8. PMID 24499204 DOI: 10.1111/Jfd.12229  0.92
2014 Li C, Beck BH, Fuller SA, Peatman E. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Animal Genetics. 45: 885-7. PMID 25160849 DOI: 10.1111/Age.12211  0.92
2014 Li C, Waldbieser G, Bosworth B, Beck BH, Thongda W, Peatman E. SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation Molecular Ecology Resources. 14: 1261-1270. PMID 24797164 DOI: 10.1111/1755-0998.12272  0.64
2014 Wang X, Li C, Thongda W, Luo Y, Beck B, Peatman E. Characterization and mucosal responses of interleukin 17 family ligand and receptor genes in channel catfish Ictalurus punctatus Fish & Shellfish Immunology. 38: 47-55. PMID 24602926 DOI: 10.1016/J.Fsi.2014.02.020  0.64
2014 Luo Y, Li C, Landis AG, Wang G, Stoeckel J, Peatman E. Transcriptomic profiling of differential responses to drought in two freshwater mussel species, the giant floater Pyganodon grandis and the pondhorn Uniomerus tetralasmus. Plos One. 9: e89481. PMID 24586812 DOI: 10.1371/Journal.Pone.0089481  0.6
2014 Thongda W, Li C, Luo Y, Beck BH, Peatman E. L-Rhamnose-binding lectins (RBLs) in channel catfish, Ictalurus punctatus: Characterization and expression profiling in mucosal tissues Developmental and Comparative Immunology. 44: 320-331. PMID 24480296 DOI: 10.1016/J.Dci.2014.01.018  0.6
2014 Li C, Beck BH, Peatman E. Nutritional impacts on gene expression in the surface mucosa of blue catfish (Ictalurus furcatus). Developmental and Comparative Immunology. 44: 226-234. PMID 24378224 DOI: 10.1016/J.Dci.2013.12.014  0.6
2014 Wong LL, Peatman E, Kelly L, Kucuktas H, Na-Nakorn U, Liu Z. Catfish Species Identification Using Lab-On-Chip PCR-RFLP Journal of Aquatic Food Product Technology. 23: 2-13. DOI: 10.1080/10498850.2012.690022  0.92
2014 Su B, Peatman E, Shang M, Thresher R, Grewe P, Patil J, Pinkert CA, Irwin MH, Li C, Perera DA, Duncan PL, Fobes M, Dunham RA. Expression and knockdown of primordial germ cell genes, vasa, nanos and dead end in common carp (Cyprinus carpio) embryos for transgenic sterilization and reduced sexual maturity Aquaculture. 420. DOI: 10.1016/J.Aquaculture.2013.07.008  0.92
2013 Liu L, Li C, Su B, Beck BH, Peatman E. Short-term feed deprivation alters immune status of surface mucosa in channel catfish (Ictalurus punctatus). Plos One. 8: e74581. PMID 24023952 DOI: 10.1371/Journal.Pone.0074581  0.8
2013 Peatman E, Li C, Peterson BC, Straus DL, Farmer BD, Beck BH. Basal polarization of the mucosal compartment in Flavobacterium columnare susceptible and resistant channel catfish (Ictalurus punctatus). Molecular Immunology. 56: 317-27. PMID 23895942 DOI: 10.1016/J.Molimm.2013.04.014  0.6
2013 Liu S, Wang X, Sun F, Zhang J, Feng J, Liu H, Rajendran KV, Sun L, Zhang Y, Jiang Y, Peatman E, Kaltenboeck L, Kucuktas H, Liu Z. RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish. Physiological Genomics. 45: 462-76. PMID 23632418 DOI: 10.1152/Physiolgenomics.00026.2013  0.92
2013 Sahu DK, Panda SP, Panda S, Das P, Meher PK, Hazra RK, Peatman E, Liu ZJ, Eknath AE, Nandi S. Identification of reproduction-related genes and SSR-markers through expressed sequence tags analysis of a monsoon breeding carp rohu, Labeo rohita (Hamilton). Gene. 524: 1-14. PMID 23583682 DOI: 10.1016/J.Gene.2013.03.111  0.56
2013 Li C, Beck B, Su B, Terhune J, Peatman E. Early mucosal responses in blue catfish (Ictalurus furcatus) skin to Aeromonas hydrophila infection Fish & Shellfish Immunology. 34: 920-928. PMID 23337110 DOI: 10.1016/J.Fsi.2013.01.002  0.64
2013 Li C, Wang R, Su B, Luo Y, Terhune J, Beck B, Peatman E. Evasion of mucosal defenses during Aeromonas hydrophila infection of channel catfish (Ictalurus punctatus) skin. Developmental and Comparative Immunology. 39: 447-455. PMID 23219904 DOI: 10.1016/J.Dci.2012.11.009  0.64
2012 Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Bmc Genomics. 13: 595. PMID 23127152 DOI: 10.1186/1471-2164-13-595  0.92
2012 Ninwichian P, Peatman E, Liu H, Kucuktas H, Somridhivej B, Liu S, Li P, Jiang Y, Sha Z, Kaltenboeck L, Abernathy JW, Wang W, Chen F, Lee Y, Wong L, et al. Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map. G3 (Bethesda, Md.). 2: 1233-41. PMID 23050234 DOI: 10.1534/G3.112.003962  0.92
2012 Khounlotham M, Kim W, Peatman E, Nava P, Medina-Contreras O, Addis C, Koch S, Fournier B, Nusrat A, Denning TL, Parkos CA. Compromised intestinal epithelial barrier induces adaptive immune compensation that protects from colitis. Immunity. 37: 563-73. PMID 22981539 DOI: 10.1016/J.Immuni.2012.06.017  0.92
2012 Beck BH, Farmer BD, Straus DL, Li C, Peatman E. Putative roles for a rhamnose binding lectin in Flavobacterium columnare pathogenesis in channel catfish Ictalurus punctatus. Fish & Shellfish Immunology. 33: 1008-15. PMID 22960031 DOI: 10.1016/J.Fsi.2012.08.018  0.6
2012 Arias CR, Cai W, Peatman E, Bullard SA. Catfish hybrid Ictalurus punctatus × I. furcatus exhibits higher resistance to columnaris disease than the parental species. Diseases of Aquatic Organisms. 100: 77-81. PMID 22885516 DOI: 10.3354/Dao02492  0.92
2012 Lu J, Peatman E, Tang H, Lewis J, Liu Z. Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications. Bmc Genomics. 13: 246. PMID 22702965 DOI: 10.1186/1471-2164-13-246  0.92
2012 Sun F, Peatman E, Li C, Liu S, Jiang Y, Zhou Z, Liu Z. Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection. Developmental and Comparative Immunology. 38: 169-80. PMID 22669032 DOI: 10.1016/J.Dci.2012.05.006  0.92
2012 Beck BH, Fuller SA, Peatman E, McEntire ME, Darwish A, Freeman DW. Chronic exogenous kisspeptin administration accelerates gonadal development in basses of the genus Morone. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 162: 265-73. PMID 22497780 DOI: 10.1016/J.Cbpa.2012.03.019  0.92
2012 Ninwichian P, Peatman E, Perera D, Liu S, Kucuktas H, Dunham R, Liu Z. Identification of a sex-linked marker for channel catfish. Animal Genetics. 43: 476-7. PMID 22497362 DOI: 10.1111/J.1365-2052.2011.02276.X  0.92
2012 Rajendran KV, Zhang J, Liu S, Peatman E, Kucuktas H, Wang X, Liu H, Wood T, Terhune J, Liu Z. Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs). Developmental and Comparative Immunology. 37: 381-9. PMID 22387588 DOI: 10.1016/J.Dci.2012.02.004  0.92
2012 Li C, Zhang Y, Wang R, Lu J, Nandi S, Mohanty S, Terhune J, Liu Z, Peatman E. RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus. Fish & Shellfish Immunology. 32: 816-27. PMID 22366064 DOI: 10.1016/J.Fsi.2012.02.004  0.92
2012 Zhang H, Peatman E, Liu H, Feng T, Chen L, Liu Z. Molecular characterization of three L-type lectin genes from channel catfish, Ictalurus punctatus and their responses to Edwardsiella ictaluri challenge. Fish & Shellfish Immunology. 32: 598-608. PMID 22245838 DOI: 10.1016/J.Fsi.2011.12.009  0.92
2012 Rajendran KV, Zhang J, Liu S, Kucuktas H, Wang X, Liu H, Sha Z, Terhune J, Peatman E, Liu Z. Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors. Developmental and Comparative Immunology. 37: 77-86. PMID 22200599 DOI: 10.1016/J.Dci.2011.12.005  0.92
2012 Zhou Z, Liu H, Liu S, Sun F, Peatman E, Kucuktas H, Kaltenboeck L, Feng T, Zhang H, Niu D, Lu J, Waldbieser G, Liu Z. Alternative complement pathway of channel catfish (Ictalurus punctatus): molecular characterization, mapping and expression analysis of factors Bf/C2 and Df. Fish & Shellfish Immunology. 32: 186-95. PMID 22138130 DOI: 10.1016/J.Fsi.2011.11.012  0.92
2012 Zhang H, Peatman E, Liu H, Niu D, Feng T, Kucuktas H, Waldbieser G, Chen L, Liu Z. Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus). Research in Veterinary Science. 92: 408-13. PMID 21524427 DOI: 10.1016/J.Rvsc.2011.03.024  0.92
2012 Wang R, Li C, Stoeckel J, Moyer G, Liu Z, Peatman E. Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach Freshwater Science. 31: 695-708. DOI: 10.1899/11-149.1  0.92
2011 Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu Z. A pilot study for channel catfish whole genome sequencing and de novo assembly. Bmc Genomics. 12: 629. PMID 22192763 DOI: 10.1186/1471-2164-12-629  0.92
2011 Abernathy J, Xu DH, Peatman E, Kucuktas H, Klesius P, Liu Z. Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 6: 382-92. PMID 21890440 DOI: 10.1016/J.Cbd.2011.08.003  0.92
2011 Feng T, Zhang H, Liu H, Zhou Z, Niu D, Wong L, Kucuktas H, Liu X, Peatman E, Liu Z. Molecular characterization and expression analysis of the channel catfish cathepsin D genes. Fish & Shellfish Immunology. 31: 164-9. PMID 21558007 DOI: 10.1016/J.Fsi.2011.04.006  0.92
2011 Wong LL, Peatman E, Lu J, Kucuktas H, He S, Zhou C, Na-nakorn U, Liu Z. DNA barcoding of catfish: species authentication and phylogenetic assessment. Plos One. 6: e17812. PMID 21423623 DOI: 10.1371/Journal.Pone.0017812  0.92
2011 Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, Liu Z. Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array. Bmc Genomics. 12: 53. PMID 21255432 DOI: 10.1186/1471-2164-12-53  0.92
2011 Niu D, Peatman E, Liu H, Lu J, Kucuktas H, Liu S, Sun F, Zhang H, Feng T, Zhou Z, Terhune J, Waldbieser G, Li J, Liu Z. Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses. Developmental and Comparative Immunology. 35: 568-79. PMID 21232551 DOI: 10.1016/J.Dci.2011.01.002  0.92
2011 Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Terhune J, Xu DH, Klesius P, Liu Z. Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus). Fish & Shellfish Immunology. 30: 992-7. PMID 21220026 DOI: 10.1016/J.Fsi.2010.12.033  0.92
2011 Bao B, Ke Z, Xing J, Peatman E, Liu Z, Xie C, Xu B, Gai J, Gong X, Yang G, Jiang Y, Tang W, Ren D. Proliferating cells in suborbital tissue drive eye migration in flatfish. Developmental Biology. 351: 200-7. PMID 21195706 DOI: 10.1016/J.Ydbio.2010.12.032  0.92
2011 Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Lu J, Xu DH, Klesius P, Waldbieser G, Liu Z. Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology. 35: 267-72. PMID 21093478 DOI: 10.1016/J.Dci.2010.11.009  0.92
2010 Wang S, Peatman E, Liu H, Bushek D, Ford SE, Kucuktas H, Quilang J, Li P, Wallace R, Wang Y, Guo X, Liu Z. Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge. Fish & Shellfish Immunology. 29: 921-9. PMID 20708691 DOI: 10.1016/J.Fsi.2010.07.035  0.92
2010 Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu S, Kucuktas H, Ke C, Liu Z. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Plos One. 5: e11546. PMID 20634964 DOI: 10.1371/Journal.Pone.0011546  0.92
2010 Lu J, Peatman E, Wang W, Yang Q, Abernathy J, Wang S, Kucuktas H, Liu Z. Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons. Molecular Genetics and Genomics : Mgg. 283: 531-9. PMID 20383527 DOI: 10.1007/S00438-010-0538-3  0.92
2010 Liu H, Takano T, Peatman E, Abernathy J, Wang S, Sha Z, Kucuktas H, Xu DH, Klesius P, Liu Z. Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment. Journal of Experimental Zoology. Part a, Ecological Genetics and Physiology. 313: 359-68. PMID 20336795 DOI: 10.1002/Jez.606  0.92
2010 Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, et al. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biology. 11: R8. PMID 20096101 DOI: 10.1186/Gb-2010-11-1-R8  0.92
2010 Jiang Y, Abernathy JW, Peatman E, Liu H, Wang S, Xu DH, Kucuktas H, Klesius P, Liu Z. Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology. 34: 590-7. PMID 20060415 DOI: 10.1016/J.Dci.2010.01.001  0.92
2010 Liu H, Takano T, Abernathy J, Wang S, Sha Z, Jiang Y, Terhune J, Kucuktas H, Peatman E, Liu Z. Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus. Fish & Shellfish Immunology. 28: 159-66. PMID 19837170 DOI: 10.1016/J.Fsi.2009.10.014  0.92
2009 Chin AC, Fournier B, Peatman EJ, Reaves TA, Lee WY, Parkos CA. CD47 and TLR-2 cross-talk regulates neutrophil transmigration. Journal of Immunology (Baltimore, Md. : 1950). 183: 5957-63. PMID 19812191 DOI: 10.4049/Jimmunol.0900789  0.92
2009 Sha Z, Abernathy JW, Wang S, Li P, Kucuktas H, Liu H, Peatman E, Liu Z. NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish. Developmental and Comparative Immunology. 33: 991-9. PMID 19414032 DOI: 10.1016/J.Dci.2009.04.004  0.92
2008 Wang S, Sha Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H, Liu Z. Quality assessment parameters for EST-derived SNPs from catfish. Bmc Genomics. 9: 450. PMID 18826589 DOI: 10.1186/1471-2164-9-450  0.92
2008 Babbin BA, Laukoetter MG, Nava P, Koch S, Lee WY, Capaldo CT, Peatman E, Severson EA, Flower RJ, Perretti M, Parkos CA, Nusrat A. Annexin A1 regulates intestinal mucosal injury, inflammation, and repair. Journal of Immunology (Baltimore, Md. : 1950). 181: 5035-44. PMID 18802107 DOI: 10.4049/Jimmunol.181.7.5035  0.92
2008 Takano T, Sha Z, Peatman E, Terhune J, Liu H, Kucuktas H, Li P, Edholm ES, Wilson M, Liu Z. The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology. 32: 693-705. PMID 18078992 DOI: 10.1016/J.Dci.2007.10.008  0.92
2008 Peatman E, Terhune J, Baoprasertkul P, Xu P, Nandi S, Wang S, Somridhivej B, Kucuktas H, Li P, Dunham R, Liu Z. Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri. Molecular Immunology. 45: 553-66. PMID 17599411 DOI: 10.1016/J.Molimm.2007.05.012  0.92
2007 Laukoetter MG, Nava P, Lee WY, Severson EA, Capaldo CT, Babbin BA, Williams IR, Koval M, Peatman E, Campbell JA, Dermody TS, Nusrat A, Parkos CA. JAM-A regulates permeability and inflammation in the intestine in vivo. The Journal of Experimental Medicine. 204: 3067-76. PMID 18039951 DOI: 10.1084/Jem.20071416  0.92
2007 Baoprasertkul P, Xu P, Peatman E, Kucuktas H, Liu Z. Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21. Fish & Shellfish Immunology. 23: 1218-30. PMID 17981052 DOI: 10.1016/J.Fsi.2007.06.002  0.92
2007 Li P, Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, Serapion J, Simmons M, Turan C, Liu L, Muir W, et al. Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs. Bmc Genomics. 8: 177. PMID 17577415 DOI: 10.1186/1471-2164-8-177  0.92
2007 Quilang J, Wang S, Li P, Abernathy J, Peatman E, Wang Y, Wang L, Shi Y, Wallace R, Guo X, Liu Z. Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. Bmc Genomics. 8: 157. PMID 17559679 DOI: 10.1186/1471-2164-8-157  0.92
2007 Peatman E, Liu Z. Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity. Immunogenetics. 59: 613-23. PMID 17541578 DOI: 10.1007/S00251-007-0228-4  0.92
2007 Peatman E, Baoprasertkul P, Terhune J, Xu P, Nandi S, Kucuktas H, Li P, Wang S, Somridhivej B, Dunham R, Liu Z. Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium. Developmental and Comparative Immunology. 31: 1183-96. PMID 17449095 DOI: 10.1016/J.Dci.2007.03.003  0.92
2007 Baoprasertkul P, Peatman E, Abernathy J, Liu Z. Structural characterisation and expression analysis of toll-like receptor 2 gene from catfish. Fish & Shellfish Immunology. 22: 418-26. PMID 17116407 DOI: 10.1016/J.Fsi.2006.04.005  0.92
2007 Nandi S, Peatman E, Xu P, Wang S, Li P, Liu Z. Repeat structure of the catfish genome: a genomic and transcriptomic assessment of Tc1-like transposon elements in channel catfish (Ictalurus punctatus). Genetica. 131: 81-90. PMID 17091335 DOI: 10.1007/S10709-006-9115-4  0.92
2007 Yang G, Bao B, Peatman E, Li H, Huang L, Ren D. Analysis of the composition of the bacterial community in puffer fish Takifugu obscurus Aquaculture. 262: 183-191. DOI: 10.1016/J.Aquaculture.2006.11.031  0.88
2006 Baoprasertkul P, Peatman E, Somridhivej B, Liu Z. Toll-like receptor 3 and TICAM genes in catfish: species-specific expression profiles following infection with Edwardsiella ictaluri. Immunogenetics. 58: 817-30. PMID 16969679 DOI: 10.1007/S00251-006-0144-Z  0.92
2006 Xu P, Wang S, Liu L, Peatman E, Somridhivej B, Thimmapuram J, Gong G, Liu Z. Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species. Animal Genetics. 37: 321-326. PMID 16879340 DOI: 10.1111/J.1365-2052.2006.01453.X  0.92
2006 Peatman E, Liu Z. CC chemokines in zebrafish: evidence for extensive intrachromosomal gene duplications. Genomics. 88: 381-5. PMID 16697551 DOI: 10.1016/J.Ygeno.2006.03.014  0.92
2006 Bao B, Peatman E, Peng X, Baoprasertkul P, Wang G, Liu Z. Characterization of 23 CC chemokine genes and analysis of their expression in channel catfish (Ictalurus punctatus). Developmental and Comparative Immunology. 30: 783-96. PMID 16510183 DOI: 10.1016/J.Dci.2005.10.007  0.92
2006 Peatman E, Bao B, Peng X, Baoprasertkul P, Brady Y, Liu Z. Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri. Molecular Genetics and Genomics : Mgg. 275: 297-309. PMID 16341548 DOI: 10.1007/S00438-005-0081-9  0.92
2006 Bao B, Peatman E, Xu P, Li P, Zeng H, He C, Liu Z. The catfish liver-expressed antimicrobial peptide 2 (LEAP-2) gene is expressed in a wide range of tissues and developmentally regulated. Molecular Immunology. 43: 367-77. PMID 16310050 DOI: 10.1016/J.Molimm.2005.02.014  0.92
2006 Wang Y, Wang Q, Baoprasertkul P, Peatman E, Liu Z. Genomic organization, gene duplication, and expression analysis of interleukin-1beta in channel catfish (Ictalurus punctatus). Molecular Immunology. 43: 1653-64. PMID 16280165 DOI: 10.1016/J.Molimm.2005.09.024  0.92
2006 Wang Q, Bao B, Wang Y, Peatman E, Liu Z. Characterization of a NK-lysin antimicrobial peptide gene from channel catfish. Fish & Shellfish Immunology. 20: 419-26. PMID 16005642 DOI: 10.1016/J.Fsi.2005.05.005  0.92
2005 Peatman E, Bao B, Baoprasertkul P, Liu Z. In silico identification and expression analysis of 12 novel CC chemokines in catfish. Immunogenetics. 57: 409-19. PMID 16001127 DOI: 10.1007/S00251-005-0006-0  0.92
2005 Baoprasertkul P, He C, Peatman E, Zhang S, Li P, Liu Z. Constitutive expression of three novel catfish CXC chemokines: homeostatic chemokines in teleost fish. Molecular Immunology. 42: 1355-66. PMID 15950731 DOI: 10.1016/J.Molimm.2004.12.012  0.92
2005 Bao B, Peatman E, Li P, He C, Liu Z. Catfish hepcidin gene is expressed in a wide range of tissues and exhibits tissue-specific upregulation after bacterial infection. Developmental and Comparative Immunology. 29: 939-50. PMID 15935472 DOI: 10.1016/J.Dci.2005.03.006  0.92
2005 Xu P, Bao B, He Q, Peatman E, He C, Liu Z. Characterization and expression analysis of bactericidal permeability-increasing protein (BPI) antimicrobial peptide gene from channel catfish Ictalurus punctatus. Developmental and Comparative Immunology. 29: 865-78. PMID 15896843 DOI: 10.1016/J.Dci.2005.03.004  0.92
2004 He C, Peatman E, Baoprasertkul P, Kucuktas H, Liu Z. Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags. Immunogenetics. 56: 379-87. PMID 15309344 DOI: 10.1007/S00251-004-0697-7  0.92
2004 Baoprasertkul P, Peatman E, Chen L, He C, Kucuktas H, Li P, Simmons M, Liu Z. Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri. Developmental and Comparative Immunology. 28: 769-80. PMID 15043945 DOI: 10.1016/J.Dci.2003.12.002  0.92
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