Edward L. Braun - Publications

Affiliations: 
University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Molecular Biology, Genetics, Evolution and Development Biology, Wildlife Conservation Agriculture

104 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Braun EL, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8  0.72
2021 Kimball RT, Hosner PA, Braun EL. A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths. Molecular Phylogenetics and Evolution. 107091. PMID 33545275 DOI: 10.1016/j.ympev.2021.107091  1
2020 Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Maltese honey bee, (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 5: 877-878. PMID 33366793 DOI: 10.1080/23802359.2020.1717384  1
2020 Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of (Insecta: Hymenoptera: Apidae), the Arabian honey bee. Mitochondrial Dna. Part B, Resources. 5: 875-876. PMID 33366792 DOI: 10.1080/23802359.2020.1717383  1
2020 Leite RN, Kimball RT, Braun EL, Derryberry EP, Hosner PA, Derryberry GE, Anciães M, McKay JS, Aleixo A, Ribas CC, Brumfield RT, Cracraft J. Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness. Molecular Phylogenetics and Evolution. 107013. PMID 33217578 DOI: 10.1016/j.ympev.2020.107013  1
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Braun EL, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.72
2020 Ksepka DT, Balanoff AM, Smith NA, Bever GS, Bhullar BS, Bourdon E, Braun EL, Burleigh JG, Clarke JA, Colbert MW, Corfield JR, Degrange FJ, De Pietri VL, Early CM, Field DJ, et al. Tempo and Pattern of Avian Brain Size Evolution. Current Biology : Cb. PMID 32330422 DOI: 10.1016/J.Cub.2020.03.060  1
2020 Hosner PA, Owens HL, Braun EL, Kimball RT. Phylogeny and diversification of the gallopheasants (Aves: Galliformes): Testing roles of sexual selection and environmental niche divergence Zoologica Scripta. DOI: 10.1111/Zsc.12441  1
2019 Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Carniolan honey bee, (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 4: 3288-3290. PMID 33365960 DOI: 10.1080/23802359.2019.1671250  1
2019 Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of (Insecta: Hymenoptera: Apidae), the Malagasy honey bee. Mitochondrial Dna. Part B, Resources. 4: 3286-3287. PMID 33365959 DOI: 10.1080/23802359.2019.1671247  1
2019 Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, et al. Earth history and the passerine superradiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30936315 DOI: 10.1073/Pnas.1813206116  1
2018 Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT. What are the roles oftaxon sampling and model fit in tests ofcyto-nuclear discordance using avian mitogenomic data? Molecular Phylogenetics and Evolution. PMID 30321694 DOI: 10.1016/J.Ympev.2018.10.008  1
2018 Chen, Braun EL, Forthman M, Kimball RT, Zhang Z. A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: placement of the partridge genus Tropicoperdix within the Galliformes. Molecular Phylogenetics and Evolution. PMID 30201427 DOI: 10.1016/J.Ympev.2018.09.005  1
2018 Liang B, Wang N, Li N, Kimball RT, Braun EL. Comparative genomics reveals a burst of homoplasy-free numt insertions. Molecular Biology and Evolution. PMID 29860531 DOI: 10.1093/Molbev/Msy112  1
2018 Eimanifar A, Kimball RT, Braun EL, Ellis JD. Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa. Scientific Reports. 8: 1333. PMID 29358597 DOI: 10.1038/S41598-018-19759-3  1
2017 Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of Tingek, an Asian honey bee (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 2: 552-553. PMID 33473896 DOI: 10.1080/23802359.2017.1365655  1
2017 Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome and phylogenetic placement of Smith (Insecta: Hymenoptera: Apidae), an Asian, cavity-nesting honey bee. Mitochondrial Dna. Part B, Resources. 2: 249-250. PMID 33473788 DOI: 10.1080/23802359.2017.1318683  1
2017 Hosner PA, Tobias JA, Braun EL, Kimball RT. How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes). Proceedings. Biological Sciences. 284. PMID 28469029 DOI: 10.1098/Rspb.2017.0210  1
2017 Feng G, Burleigh JG, Braun EL, Mei W, Barbazuk WB. Evolution of the 3R-MYB Gene Family in Plants. Genome Biology and Evolution. PMID 28444194 DOI: 10.1093/Gbe/Evx056  0.6
2017 Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, ... ... Braun EL, et al. Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling. Systematic Biology. PMID 28369655 DOI: 10.1093/Sysbio/Syx041  1
2017 Wang N, Hosner PA, Liang B, Braun EL, Kimball RT. Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data. Molecular Phylogenetics and Evolution. PMID 28088402 DOI: 10.1016/J.Ympev.2017.01.006  1
2016 Hosner PA, Braun EL, Kimball RT. Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Molecular Phylogenetics and Evolution. 102: 320-330. PMID 27369454 DOI: 10.1016/J.Ympev.2016.06.006  1
2016 Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, ... ... Braun EL, et al. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology : Cb. PMID 27238284 DOI: 10.1016/J.Cub.2016.04.038  1
2016 Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences. Molecular Phylogenetics and Evolution. 98: 123-32. PMID 26879712 DOI: 10.1016/J.Ympev.2016.02.003  1
2016 Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL. Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods. Systematic Biology. PMID 26865273 DOI: 10.1093/Sysbio/Syw014  1
2016 Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes). Molecular Biology and Evolution. 33: 1110-25. PMID 26715628 DOI: 10.1093/Molbev/Msv347  1
2016 Wang N, Kimball RT, Braun EL, Liang B, Zhang Z. Ancestral range reconstruction of Galliformes: The effects of topology and taxon sampling Journal of Biogeography. DOI: 10.1111/Jbi.12782  1
2016 Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences Molecular Phylogenetics and Evolution. 98: 123-132. DOI: 10.1016/j.ympev.2016.02.003  1
2016 Ascunce MS, Huguet-Tapia JC, Braun EL, Ortiz-Urquiza A, Keyhani NO, Goss EM. Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA Genomics Data. 7: 60-61. DOI: 10.1016/j.gdata.2015.11.019  0.56
2015 Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/Science.Aab1578  1
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Braun EL, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1  1
2015 Burleigh JG, Kimball RT, Braun EL. Building the avian tree of life using a large-scale, sparse supermatrix Molecular Phylogenetics and Evolution. 84: 53-63. PMID 25550149 DOI: 10.1016/J.Ympev.2014.12.003  1
2015 Suh A, Churakov G, Ramakodi MP, Platt RN, Jurka J, Kojima KK, Caballero J, Smit AF, Vliet KA, Hoffmann FG, Brosius J, Green RE, Braun EL, Ray DA, Schmitz J. Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes. Genome Biology and Evolution. 7: 205-17. PMID 25503085 DOI: 10.1093/Gbe/Evu256  1
2015 Hosner PA, Braun EL, Kimball RT. Land connectivity changes and global cooling shaped the colonization history and diversification of New World quail (Aves: Galliformes: Odontophoridae) Journal of Biogeography. DOI: 10.1111/Jbi.12555  0.56
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449  1
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Braun EL, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451  0.48
2014 Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H. Early mesozoic coexistence of amniotes and hepadnaviridae. Plos Genetics. 10: e1004559. PMID 25501991 DOI: 10.1371/Journal.Pgen.1004559  1
2014 Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25030982 DOI: 10.1098/Rspb.2014.0823  1
2014 Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT. Incongruence among different mitochondrial regions: A case study using complete mitogenomes Molecular Phylogenetics and Evolution. 78: 314-323. PMID 24929245 DOI: 10.1016/J.Ympev.2014.06.003  1
2014 Kimball RT, Braun EL. Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix. Peerj. 2: e361. PMID 24795852 DOI: 10.7717/Peerj.361  1
2014 Kimball RT, Braun EL. Does more sequence data improve estimates of galliformphylogeny? Analyses of a rapid radiation using a complete data matrix Peerj. 2014. DOI: 10.7717/peerj.361  1
2014 Kumar A, Braun E, Kimball R. Adaptive evolution of Cep63-CEP152 centrosome microcephaly ring in association with brain size shift in mammals F1000research. 5. DOI: 10.7490/F1000Research.1096500.1  0.6
2014 Kimball RT, Sun K, Meicklejohn K, Braun E, Faircloth B, Glenn T. Testing Darwin's hypothesis on the evolution of ornamental eyespots in peafowl and their relatives F1000research. 5. DOI: 10.7490/F1000Research.1096417.1  1
2014 Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. The evolution of peafowl and other taxa with ocelli (eyespots): A phylogenomic approach Proceedings of the Royal Society B: Biological Sciences. 281. DOI: 10.1098/rspb.2014.0823  1
2013 Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL. Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals. Biology. 2: 419-44. PMID 24832669 DOI: 10.3390/Biology2010419  1
2013 Kimball RT, Wang N, Heimer-McGinn V, Ferguson C, Braun EL. Identifying localized biases in large datasets: a case study using the avian tree of life. Molecular Phylogenetics and Evolution. 69: 1021-32. PMID 23791948 DOI: 10.1016/J.Ympev.2013.05.029  1
2013 Wang N, Kimball RT, Braun EL, Liang B, Zhang Z. Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae. Plos One. 8: e64312. PMID 23741315 DOI: 10.1371/Journal.Pone.0064312  1
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28  1
2013 Smith JV, Braun EL, Kimball RT. Ratite nonmonophyly: independent evidence from 40 novel Loci. Systematic Biology. 62: 35-49. PMID 22831877 DOI: 10.1093/Sysbio/Sys067  1
2012 Castoe TA, Braun EL, Bronikowski AM, Cox CL, Rabosky AR, Jason de Koning AP, Dobry J, Fujita MK, Giorgianni MW, Hargreaves A, Henkel CV, Mackessy SP, O'Meally D, Rokyta DR, Secor SM, et al. Report from the first snake genomics and integrative biology meeting. Standards in Genomic Sciences. 7: 150-2. PMID 23451292 DOI: 10.4056/Sigs.3106480  1
2012 Chojnowski JL, Braun EL. An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination. Bmc Genomics. 13: 308. PMID 22793670 DOI: 10.1186/1471-2164-13-308  1
2012 Ponciano JM, Burleigh JG, Braun EL, Taper ML. Assessing parameter identifiability in phylogenetic models using data cloning. Systematic Biology. 61: 955-72. PMID 22649181 DOI: 10.1093/Sysbio/Sys055  1
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415  1
2012 Wang N, Braun EL, Kimball RT. Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set. Molecular Biology and Evolution. 29: 737-50. PMID 21940640 DOI: 10.1093/Molbev/Msr230  1
2011 Lim CH, Hamazaki T, Braun EL, Wade J, Terada N. Evolutionary genomics implies a specific function of Ant4 in mammalian and anole lizard male germ cells Plos One. 6. PMID 21858006 DOI: 10.1371/Journal.Pone.0023122  1
2011 Kimball RT, Mary CM, Braun EL. A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes). International Journal of Evolutionary Biology. 2011: 423938. PMID 21716735 DOI: 10.4061/2011/423938  1
2011 Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. Homoplastic microinversions and the avian tree of life. Bmc Evolutionary Biology. 11: 141. PMID 21612607 DOI: 10.1186/1471-2148-11-141  1
2011 Feller A, Machemer K, Braun EL, Grotewold E. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. The Plant Journal : For Cell and Molecular Biology. 66: 94-116. PMID 21443626 DOI: 10.1111/J.1365-313X.2010.04459.X  1
2011 Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, et al. Are transposable element insertions homoplasy free?: an examination using the avian tree of life. Systematic Biology. 60: 375-86. PMID 21303823 DOI: 10.1093/Sysbio/Syq100  1
2010 Bonilla AJ, Braun EL, Kimball RT. Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes. Molecular Phylogenetics and Evolution. 56: 536-42. PMID 20398778 DOI: 10.1016/J.Ympev.2010.04.006  1
2010 Zhu J, Braun EL, Kohno S, Antenos M, Xu EY, Cook RW, Lin SJ, Moore BC, Guillette LJ, Jardetzky TS, Woodruff TK. Phylogenomic analyses reveal the evolutionary origin of the inhibin alpha-subunit, a unique TGFbeta superfamily antagonist. Plos One. 5: e9457. PMID 20209104 DOI: 10.1371/Journal.Pone.0009457  1
2009 Katsu Y, Braun EL, Guillette LJ, Iguchi T. From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes. Cytogenetic and Genome Research. 127: 79-93. PMID 20234127 DOI: 10.1159/000297715  1
2009 Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution. 50: 654-60. PMID 19084073 DOI: 10.1016/J.Ympev.2008.11.018  1
2008 Phillips N, Calhoun S, Moustafa A, Bhattacharya D, Braun EL. GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE(1). Journal of Phycology. 44: 15-8. PMID 27041034 DOI: 10.1111/J.1529-8817.2007.00435.X  1
2008 Braun EL, Phillips N. PHYLOGENOMICS AND SECONDARY PLASTIDS: A LOOK BACK AND A LOOK AHEAD(1). Journal of Phycology. 44: 2-6. PMID 27041031 DOI: 10.1111/J.1529-8817.2007.00432.X  1
2008 Chojnowski JL, Braun EL. Turtle isochore structure is intermediate between amphibians and other amniotes. Integrative and Comparative Biology. 48: 454-62. PMID 21669806 DOI: 10.1093/Icb/Icn062  1
2008 Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, et al. Phylogenomic evidence for multiple losses of flight in ratite birds. Proceedings of the National Academy of Sciences of the United States of America. 105: 13462-7. PMID 18765814 DOI: 10.1073/Pnas.0803242105  1
2008 Georgelis N, Braun EL, Hannah LC. Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants. Bmc Evolutionary Biology. 8: 232. PMID 18700010 DOI: 10.1186/1471-2148-8-232  1
2008 Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, et al. A phylogenomic study of birds reveals their evolutionary history. Science (New York, N.Y.). 320: 1763-8. PMID 18583609 DOI: 10.1126/Science.1157704  1
2008 Chojnowski JL, Kimball RT, Braun EL. Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes. Gene. 410: 89-96. PMID 18191344 DOI: 10.1016/J.Gene.2007.11.016  1
2008 Yuri T, Kimball RT, Braun EL, Braun MJ. Duplication of accelerated evolution and growth hormone gene in passerine birds. Molecular Biology and Evolution. 25: 352-61. PMID 18048401 DOI: 10.1093/Molbev/Msm260  1
2008 Kimball RT, Braun EL. A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits Journal of Avian Biology. 39: 438-445. DOI: 10.1111/J.0908-8857.2008.04270.X  1
2008 Yuri T, Kimball RT, Braun EL, Braun MJ. Duplication and accelerated evolution of growth hormone gene in passerine birds (Molecular Biology and Evolution (2008) 25, (362-374) DOI: 10.1093/molbev/msm260) Molecular Biology and Evolution. 25: 795. DOI: 10.1093/molbev/msn048  1
2007 Chojnowski JL, Franklin J, Katsu Y, Iguchi T, Guillette LJ, Kimball RT, Braun EL. Patterns of vertebrate isochore evolution revealed by comparison of expressed mammalian, avian, and crocodilian genes. Journal of Molecular Evolution. 65: 259-66. PMID 17674077 DOI: 10.1007/S00239-007-9003-2  1
2007 Georgelis N, Braun EL, Shaw JR, Hannah LC. The two AGPase subunits evolve at different rates in angiosperms, yet they are equally sensitive to activity-altering amino acid changes when expressed in bacteria. The Plant Cell. 19: 1458-72. PMID 17496118 DOI: 10.1105/Tpc.106.049676  1
2007 Sassi SO, Braun EL, Benner SA. The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events? Molecular Biology and Evolution. 24: 1012-24. PMID 17267422 DOI: 10.1093/Molbev/Msm020  1
2007 Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D. Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Molecular Biology and Evolution. 24: 269-80. PMID 17062634 DOI: 10.1093/Molbev/Msl158  1
2007 Cox WA, Kimball RT, Braun EL. Phylogenetic position of the New World quail (Odontophoridae): Eight nuclear loci and three mitochondrial regions contradict morphology and the Sibley-Ahlquist tapestry Auk. 124: 71-84. DOI: 10.1642/0004-8038(2007)124[71:Ppotnw]2.0.Co;2  1
2004 Katsu Y, Bermudez DS, Braun EL, Helbing C, Miyagawa S, Gunderson MP, Kohno S, Bryan TA, Guillette LJ, Iguchi T. Molecular cloning of the estrogen and progesterone receptors of the American alligator. General and Comparative Endocrinology. 136: 122-33. PMID 14980803 DOI: 10.1016/J.Ygcen.2003.11.008  1
2004 Braun EL, Natvig DO, Werner-Washburne M, Anne Nelson M. Genomics in Neurospora crassa: From One-Gene-One-Enzyme to 10,000 Genes Applied Mycology and Biotechnology. 4: 295-313. DOI: 10.1016/S1874-5334(04)80015-7  1
2003 Braun EL. Innovation from reduction: gene loss, domain loss and sequence divergence in genome evolution. Applied Bioinformatics. 2: 13-34. PMID 15130831  1
2003 Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Braun EL, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554  1
2003 Dias AP, Braun EL, McMullen MD, Grotewold E. Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiology. 131: 610-20. PMID 12586885 DOI: 10.1104/Pp.012047  1
2002 Braun EL, Kimball RT. Examining Basal avian divergences with mitochondrial sequences: model complexity, taxon sampling, and sequence length. Systematic Biology. 51: 614-25. PMID 12228003 DOI: 10.1080/10635150290102294  1
2001 Dong X, Braun EL, Grotewold E. Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes. Plant Physiology. 127: 46-57. PMID 11553733 DOI: 10.1104/Pp.127.1.46  1
2001 Braun EL, Kimball RT. Polytomies, the power of phylogenetic inference, and the stochastic nature of molecular evolution: a comment on Walsh et al. (1999). Evolution; International Journal of Organic Evolution. 55: 1261-3; discussion 1. PMID 11475063 DOI: 10.1111/J.0014-3820.2001.Tb00647.X  1
2001 Braun EL, Grotewold E. Fungal Zuotin proteins evolved from MIDA1-like factors by lineage-specific loss of MYB domains. Molecular Biology and Evolution. 18: 1401-12. PMID 11420378 DOI: 10.1093/Oxfordjournals.Molbev.A003924  1
2001 Randi E, Lucchini V, Hennache A, Kimball RT, Braun EL, Ligon JD. Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Molecular Phylogenetics and Evolution. 19: 187-201. PMID 11341802 DOI: 10.1006/Mpev.2001.0922  1
2001 Bean LE, Dvorachek WH, Braun EL, Errett A, Saenz GS, Giles MD, Werner-Washburne M, Nelson MA, Natvig DO. Analysis of the pdx-1 (snz-1/sno-1) region of the Neurospora crassa genome: correlation of pyridoxine-requiring phenotypes with mutations in two structural genes. Genetics. 157: 1067-75. PMID 11238395  1
2001 Armstrong MH, Braun EL, Kimball RT. Phylogenetic utility of avian ovomucoid intron G: A comparison of nuclear and mitochondrial phylogenies in galliformes Auk. 118: 799-804. DOI: 10.1642/0004-8038(2001)118[0799:Puoaoi]2.0.Co;2  1
2001 Kimball RT, Braun EL, Ligon DJ, Lucchini V, Randi E. A molecular phylogeny of the peacock-pheasants (Galliformes: Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours Biological Journal of the Linnean Society. 73: 187-198. DOI: 10.1111/J.1095-8312.2001.Tb01356.X  1
2001 Braun EL, Dias AP, Matulnik TJ, Grotewold E. Chapter Five Transcription factors and metabolic engineering: Novel applications for ancient tools Recent Advances in Phytochemistry. 35: 79-109. DOI: 10.1016/S0079-9920(01)80006-X  1
2000 Braun EL, Halpern AL, Nelson MA, Natvig DO. Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae. Genome Research. 10: 416-30. PMID 10779483 DOI: 10.1101/Gr.10.4.416  1
2000 Randi E, Lucchini V, Armijo-Prewitt T, Kimball RT, Braun EL, Ligon JD. Mitochondrial DNA phylogeny and speciation in the tragopans Auk. 117: 1003-1015. DOI: 10.1642/0004-8038(2000)117[1003:Mdpasi]2.0.Co;2  1
1999 Braun EL, Grotewold E. Newly discovered plant c-myb-like genes rewrite the evolution of the plant myb gene family. Plant Physiology. 121: 21-4. PMID 10482656 DOI: 10.1104/Pp.121.1.21  1
1999 Rabinowicz PD, Braun EL, Wolfe AD, Bowen B, Grotewold E. Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. Genetics. 153: 427-44. PMID 10471724  1
1999 Bieszke JA, Braun EL, Bean LE, Kang S, Natvig DO, Borkovich KA. The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins. Proceedings of the National Academy of Sciences of the United States of America. 96: 8034-9. PMID 10393943 DOI: 10.1073/Pnas.96.14.8034  1
1999 Kimball RT, Braun EL, Zwartjes PW, Crowe TM, Ligon JD. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Molecular Phylogenetics and Evolution. 11: 38-54. PMID 10082609 DOI: 10.1006/Mpev.1998.0562  1
1998 Braun EL, Kang S, Nelson MA, Natvig DO. Identification of the first fungal annexin: analysis of annexin gene duplications and implications for eukaryotic evolution. Journal of Molecular Evolution. 47: 531-43. PMID 9797403 DOI: 10.1007/Pl00006409  1
1997 Kimball RT, Braun EL, Ligon JD. Resolution of the phylogenetic position of the Congo peafowl, Afropavo congensis: a biogeographic and evolutionary enigma. Proceedings. Biological Sciences / the Royal Society. 264: 1517-23. PMID 9364791 DOI: 10.1098/Rspb.1997.0210  1
1997 Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, et al. Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 21: 348-63. PMID 9290248 DOI: 10.1006/Fgbi.1997.0986  1
1996 Braun EL, Fuge EK, Padilla PA, Werner-Washburne M. A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family. Journal of Bacteriology. 178: 6865-72. PMID 8955308 DOI: 10.1128/Jb.178.23.6865-6872.1996  1
1996 Werner-Washburne M, Braun EL, Crawford ME, Peck VM. Stationary phase in Saccharomyces cerevisiae. Molecular Microbiology. 19: 1159-66. PMID 8730858 DOI: 10.1111/J.1365-2958.1996.Tb02461.X  1
1994 Fuge EK, Braun EL, Werner-Washburne M. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. Journal of Bacteriology. 176: 5802-13. PMID 8083172 DOI: 10.1128/Jb.176.18.5802-5813.1994  1
Show low-probability matches.