Stephen DiFazio - Publications

Affiliations: 
West Virginia University, Morgantown, WV, United States 
Area:
Genetics, Botany Biology, Evolution and Development Biology

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Zhou R, Macaya-Sanz D, Rodgers-Melnick E, Carlson CH, Gouker FE, Evans LM, Schmutz J, Jenkins JW, Yan J, Tuskan GA, Smart LB, DiFazio SP. Characterization of a large sex determination region in Salix purpurea L. (Salicaceae). Molecular Genetics and Genomics : Mgg. PMID 30022352 DOI: 10.1007/s00438-018-1473-y  0.52
2015 Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápšt? J, Porth I, Skyba O, Unda F, et al. High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus. Bmc Genomics. 16: 24. PMID 25613058 DOI: 10.1186/s12864-015-1215-z  0.52
2015 Evans LM, Allan GJ, DiFazio SP, Slavov GT, Wilder JA, Floate KD, Rood SB, Whitham TG. Geographical barriers and climate influence demographic history in narrowleaf cottonwoods. Heredity. 114: 387-96. PMID 25585921 DOI: 10.1038/hdy.2014.115  0.52
2014 Evans LM, Slavov GT, Rodgers-Melnick E, Martin J, Ranjan P, Muchero W, Brunner AM, Schackwitz W, Gunter L, Chen JG, Tuskan GA, DiFazio SP. Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. Nature Genetics. 46: 1089-96. PMID 25151358 DOI: 10.1038/ng.3075  0.52
2013 Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu B, Qiu Q, Wang Z, Zhang J, Wang K, Jiang D, Gou C, Yu L, Zhan D, ... ... Difazio SP, et al. Genomic insights into salt adaptation in a desert poplar. Nature Communications. 4: 2797. PMID 24256998 DOI: 10.1038/ncomms3797  0.52
2013 Rodgers-Melnick E, Culp M, DiFazio SP. Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. Bmc Genomics. 14: 608. PMID 24015873 DOI: 10.1186/1471-2164-14-608  0.52
2013 Porth I, Klapšte J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, Friedmann MC, Ehlting J, Cronk QC, El-Kassaby YA, Douglas CJ, et al. Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms. The New Phytologist. 200: 710-26. PMID 23889164 DOI: 10.1111/nph.12422  0.52
2013 Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, et al. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species. Molecular Ecology Resources. 13: 306-23. PMID 23311503 DOI: 10.1111/1755-0998.12056  0.52
2013 Wullschleger SD, Weston DJ, Difazio SP, Tuskan GA. Revisiting the sequencing of the first tree genome: Populus trichocarpa Tree Physiology. 33: 357-364. PMID 23100257 DOI: 10.1093/treephys/tps081  0.52
2012 Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. The New Phytologist. 196: 713-25. PMID 22861491 DOI: 10.1111/j.1469-8137.2012.04258.x  0.52
2012 Induri BR, Ellis DR, Slavov GT, Yin T, Zhang X, Muchero W, Tuskan GA, DiFazio SP. Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus. Tree Physiology. 32: 626-38. PMID 22522179 DOI: 10.1093/treephys/tps032  0.52
2012 DiFazio SP, Leonardi S, Slavov GT, Garman SL, Adams WT, Strauss SH. Gene flow and simulation of transgene dispersal from hybrid poplar plantations. The New Phytologist. 193: 903-15. PMID 22221193 DOI: 10.1111/j.1469-8137.2011.04012.x  0.52
2012 Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, Difazio SP. Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Research. 22: 95-105. PMID 21974993 DOI: 10.1101/gr.125146.111  0.52
2012 Wang J, Cheng Q, Adebayo A, Difazio S. Polyvinyl alcohol nanocomposites reinforced with cellulosic nanofibers isolated from juvenile poplar Fiber-Reinforced Composites. 91-103.  0.52
2010 Slavov GT, Leonardi S, Adams WT, Strauss SH, Difazio SP. Population substructure in continuous and fragmented stands of Populus trichocarpa Heredity. 105: 348-357. PMID 20531447 DOI: 10.1038/hdy.2010.73  0.52
2010 Cheng Q, Adebayo AB, Wang J, DiFazio S. Green pretreatments on genetically improved hybrid poplar for ethanol production American Society of Agricultural and Biological Engineers Annual International Meeting 2010, Asabe 2010. 3: 1813-1821.  0.52
2009 Islam-Faridi MN, Nelson CD, DiFazio SP, Gunter LE, Tuskan GA. Cytogenetic analysis of Populus trichocarpa - Ribosomal DNA, telomere repeat sequence, and marker-selected BACs Cytogenetic and Genome Research. 125: 74-80. PMID 19617699 DOI: 10.1159/000218749  0.52
2009 Slavov GT, Leonardi S, Burczyk J, Adams WT, Strauss SH, Difazio SP. Extensive pollen flow in two ecologically contrasting populations of Populus trichocarpa Molecular Ecology. 18: 357-373. PMID 19076277 DOI: 10.1111/j.1365-294X.2008.04016.x  0.52
2009 Yang X, Kalluri UC, DiFazio SP, Wullschleger SD, Tschaplinski TJ, Cheng ZM, Tuskan GA. Poplar genomics: State of the science Critical Reviews in Plant Sciences. 28: 285-308. DOI: 10.1080/07352680903241014  0.52
2008 Ma H, Difazio S. An efficient method for purification of PCR products for sequencing. Biotechniques. 44: 921-3. PMID 18533902 DOI: 10.2144/000112809  0.52
2008 Whitham TG, Difazio SP, Schweitzer JA, Shuster SM, Allan GJ, Bailey JK, Woolbright SA. Extending genomics to natural communities and ecosystems. Science (New York, N.Y.). 320: 492-5. PMID 18436780 DOI: 10.1126/science.1153918  0.52
2008 Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, ... ... DiFazio S, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 452: 88-92. PMID 18322534 DOI: 10.1038/nature06556  0.52
2008 Yin T, Difazio SP, Gunter LE, Zhang X, Sewell MM, Woolbright SA, Allan GJ, Kelleher CT, Douglas CJ, Wang M, Tuskan GA. Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Research. 18: 422-30. PMID 18256239 DOI: 10.1101/gr.7076308  0.52
2008 Woolbright SA, Difazio SP, Yin T, Martinsen GD, Zhang X, Allan GJ, Whitham TG, Keim P. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity. 100: 59-70. PMID 17895905 DOI: 10.1038/sj.hdy.6801063  0.52
2007 Kalluri UC, Difazio SP, Brunner AM, Tuskan GA. Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. Bmc Plant Biology. 7: 59. PMID 17986329 DOI: 10.1186/1471-2229-7-59  0.52
2007 Filichkin SA, DiFazio SP, Brunner AM, Davis JM, Yang ZK, Kalluri UC, Arias RS, Etherington E, Tuskan GA, Strauss SH. Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors. Plant Biotechnology Journal. 5: 615-26. PMID 17573806 DOI: 10.1111/j.1467-7652.2007.00267.x  0.52
2007 Brunner AM, DiFazio SP, Groover AT. Forest genomics grows up and branches out. The New Phytologist. 174: 710-3. PMID 17504453 DOI: 10.1111/j.1469-8137.2007.02083.x  0.52
2007 Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, et al. A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. The Plant Journal : For Cell and Molecular Biology. 50: 1063-78. PMID 17488239 DOI: 10.1111/j.1365-313X.2007.03112.x  0.52
2007 Brunner AM, Li J, DiFazio SP, Shevchenko O, Montgomery BE, Mohamed R, Wei H, Ma C, Elias AA, VanWormer K, Strauss SH. Genetic containment of forest plantations Tree Genetics and Genomes. 3: 75-100. DOI: 10.1007/s11295-006-0067-8  0.52
2006 Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (New York, N.Y.). 313: 1596-604. PMID 16973872 DOI: 10.1126/science.1128691  0.52
2006 Groover AT, Mansfield SD, DiFazio SP, Dupper G, Fontana JR, Millar R, Wang Y. The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium. Plant Molecular Biology. 61: 917-32. PMID 16927204 DOI: 10.1007/s11103-006-0059-y  0.52
2006 Whitham TG, Bailey JK, Schweitzer JA, Shuster SM, Bangert RK, LeRoy CJ, Lonsdorf EV, Allan GJ, DiFazio SP, Potts BM, Fischer DG, Gehring CA, Lindroth RL, Marks JC, Hart SC, et al. A framework for community and ecosystem genetics: from genes to ecosystems. Nature Reviews. Genetics. 7: 510-23. PMID 16778835 DOI: 10.1038/nrg1877  0.52
2005 DiFazio SP. A pioneer perspective on adaptation. Functional genomics of environmental adaptation in Populus: the 12th New Phytologist Symposium, Gatlinburg, TN, USA, October 2004. The New Phytologist. 165: 661-4. PMID 15720678 DOI: 10.1111/j.1469-8137.2005.01334.x  0.52
2005 Wullschleger SD, Yin TM, DiFazio SP, Tschaplinski TJ, Gunter LE, Davis MF, Tuskan GA. Phenotypic variation in growth and biomass distribution for two advanced-generation pedigrees of hybrid poplar Canadian Journal of Forest Research. 35: 1779-1789. DOI: 10.1139/x05-101  0.52
2005 Whitham TG, Lonsdorf E, Schweitzer JA, Bailey JK, Fischer DG, Shuster SM, Lindroth RL, Hart SC, Allan GJ, Gehring CA, Keim P, Potts BM, Marks J, Rehill BJ, DiFazio SP, et al. "All effects of a gene on the world": Extended phenotypes, feedbacks, and multi-level selection Ecoscience. 12: 5-7.  0.52
2004 Yin TM, DiFazio SP, Gunter LE, Riemenschneider D, Tuskan GA. Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map Theoretical and Applied Genetics. 109: 451-463. PMID 15168022  0.52
2004 Tuskan GA, Difazio SP, Teichmann T. Poplar Genomics is Getting Popular: The Impact of the Poplar Genome Project on Tree Research Plant Biology. 6: 2-4. PMID 15095128 DOI: 10.1055/s-2003-44715  0.52
2004 Lammers P, Tuskan GA, DiFazio SP, Podila GK, Martin F. Mycorrhizal symbionts of Populus to be sequenced by the United States Department of Energy's Joint Genome Institute Mycorrhiza. 14: 63-64. PMID 14689288 DOI: 10.1007/s00572-003-0288-8  0.52
2004 Tuskan GA, Gunter LE, Yang ZK, Yin T, Sewell MM, DiFazio SP. Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa Canadian Journal of Forest Research. 34: 85-93. DOI: 10.1139/x03-283  0.52
2004 Yin TM, DiFazio SP, Gunter LE, Jawdy SS, Boerjan W, Tuskan GA. Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence New Phytologist. 164: 95-105. DOI: 10.1111/j.1469-8137.2004.01161.x  0.52
2004 Martin F, Tuskan GA, DiFazio SP, Lammers P, Newcombe G, Podila GK. Symbiotic sequencing for the Populus mesocosm New Phytologist. 161: 330-335. DOI: 10.1111/j.1469-8137.2004.00982.x  0.52
2004 Burczyk J, DiFazio SP, Adams WT. Gene flow in forest trees: How far do genes really travel? Forest Genetics. 11: 179-192.  0.52
2003 Wullschleger SD, Difazio SP. Emerging use of gene expression microarrays in plant physiology. Comparative and Functional Genomics. 4: 216-24. PMID 18629133 DOI: 10.1002/cfg.277  0.52
2002 Wullschleger SD, Tuskan GA, DiFazio SP. Genomics and the tree physiologist Tree Physiology. 22: 1273-1276. PMID 12490424  0.52
2002 Meilan R, Han KH, Ma C, DiFazio SP, Eaton JA, Hoien EA, Stanton BJ, Crockett RP, Taylor ML, James RR, Skinner JS, Jouanin L, Pilate G, Strauss SH. The CP4 transgene provides high levels of tolerance to Roundup® herbicide in field-grown hybrid poplars Canadian Journal of Forest Research. 32: 967-976. DOI: 10.1139/x02-015  0.52
2002 Meilan R, Auerbach DJ, Ma C, DiFazio SP, Strauss SH. Stability of herbicide resistance and GUS expression in transgenic hybrid poplars (Populus sp.) during four years of field trials and vegetative propagation Hortscience. 37: 277-280.  0.52
2001 Strauss SH, DiFazio SP, Meilan R. Genetically modified poplars in context Forestry Chronicle. 77: 271-279.  0.52
2000 Brunner AM, Rottmann WH, Sheppard LA, Krutovskii K, DiFazio SP, Leonardi S, Strauss SH. Structure and expression of duplicate AGAMOUS orthologues in poplar Plant Molecular Biology. 44: 619-634. PMID 11198423 DOI: 10.1023/A:1026550205851  0.52
1998 James RR, Difazio SP, Brunner AM, Strauss SH. Environmental effects of genetically engineered woody biomass crops Biomass and Bioenergy. 14: 403-414. DOI: 10.1016/S0961-9534(97)10077-0  0.52
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