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Aviv Bergman - Publications

Affiliations: 
Yeshiva University, New York, NY, United States 
Area:
Systematic Biology, Evolution and Development Biology, Aging
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Khan JA, Mendelson A, Kunisaki Y, Birbrair A, Kou Y, Arnal-Estapé A, Pinho S, Ciero P, Nakahara F, Ma'ayan A, Bergman A, Merad M, Frenette PS. Fetal liver hematopoietic stem cell niches associate with portal vessels. Science (New York, N.Y.). PMID 26634440 DOI: 10.1126/science.aad0084  1
2015 Ben-Dayan MM, MacCarthy T, Schlecht NF, Belbin TJ, Childs G, Smith RV, Prystowsky MB, Bergman A. Cancer as the Disintegration of Robustness: Population-Level Variance in Gene Expression Identifies Key Differences Between Tobacco- and HPV-Associated Oropharyngeal Carcinogenesis. Archives of Pathology & Laboratory Medicine. PMID 26132601 DOI: 10.5858/arpa.2014-0624-OA  1
2015 Smith C, Pechuan X, Puzio RS, Biro D, Bergman A. Potential unsatisfiability of cyclic constraints on stochastic biological networks biases selection towards hierarchical architectures. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 26040595 DOI: 10.1098/rsif.2015.0179  1
2015 Bolt K, Bergman A. Systems biology of aging. Advances in Experimental Medicine and Biology. 847: 163-78. PMID 25916591 DOI: 10.1007/978-1-4939-2404-2_8  1
2015 Wei L, Chahwan R, Wang S, Wang X, Pham PT, Goodman MF, Bergman A, Scharff MD, MacCarthy T. Overlapping hotspots in CDRs are critical sites for V region diversification. Proceedings of the National Academy of Sciences of the United States of America. 112: E728-37. PMID 25646473 DOI: 10.1073/pnas.1500788112  1
2014 Gligorijevic B, Bergman A, Condeelis J. Multiparametric classification links tumor microenvironments with tumor cell phenotype. Plos Biology. 12: e1001995. PMID 25386698 DOI: 10.1371/journal.pbio.1001995  1
2014 Bruns I, Lucas D, Pinho S, Ahmed J, Lambert MP, Kunisaki Y, Scheiermann C, Schiff L, Poncz M, Bergman A, Frenette PS. Megakaryocytes regulate hematopoietic stem cell quiescence through CXCL4 secretion. Nature Medicine. 20: 1315-20. PMID 25326802 DOI: 10.1038/nm.3707  1
2014 Gershoni M, Levin L, Ovadia O, Toiw Y, Shani N, Dadon S, Barzilai N, Bergman A, Atzmon G, Wainstein J, Tsur A, Nijtmans L, Glaser B, Mishmar D. Disrupting mitochondrial-nuclear coevolution affects OXPHOS complex I integrity and impacts human health. Genome Biology and Evolution. 6: 2665-80. PMID 25245408 DOI: 10.1093/gbe/evu208  1
2014 Vacic V, Ozelius LJ, Clark LN, Bar-Shira A, Gana-Weisz M, Gurevich T, Gusev A, Kedmi M, Kenny EE, Liu X, Mejia-Santana H, Mirelman A, Raymond D, Saunders-Pullman R, Desnick RJ, ... ... Bergman A, et al. Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes. Human Molecular Genetics. 23: 4693-702. PMID 24842889 DOI: 10.1093/hmg/ddu158  1
2014 Gombar S, MacCarthy T, Bergman A. Epigenetics decouples mutational from environmental robustness. Did it also facilitate multicellularity? Plos Computational Biology. 10: e1003450. PMID 24604070 DOI: 10.1371/journal.pcbi.1003450  1
2014 Chang AL, Atzmon G, Bergman A, Brugmann S, Atwood SX, Chang HY, Barzilai N. Identification of genes promoting skin youthfulness by genome-wide association study. The Journal of Investigative Dermatology. 134: 651-7. PMID 24037343 DOI: 10.1038/jid.2013.381  1
2013 Chow SK, Smith C, MacCarthy T, Pohl MA, Bergman A, Casadevall A. Disease-enhancing antibodies improve the efficacy of bacterial toxin-neutralizing antibodies. Cell Host & Microbe. 13: 417-28. PMID 23601104 DOI: 10.1016/j.chom.2013.03.001  1
2012 Huffman DM, Deelen J, Ye K, Bergman A, Slagboom EP, Barzilai N, Atzmon G. Distinguishing between longevity and buffered-deleterious genotypes for exceptional human longevity: the case of the MTP gene. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 67: 1153-60. PMID 22496539 DOI: 10.1093/gerona/gls103  1
2012 Kenny EE, Pe'er I, Karban A, Ozelius L, Mitchell AA, Ng SM, Erazo M, Ostrer H, Abraham C, Abreu MT, Atzmon G, Barzilai N, Brant SR, Bressman S, Burns ER, ... ... Bergman A, et al. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. Plos Genetics. 8: e1002559. PMID 22412388 DOI: 10.1371/journal.pgen.1002559  1
2012 Wontakal SN, Guo X, Smith C, MacCarthy T, Bresnick EH, Bergman A, Snyder MP, Weissman SM, Zheng D, Skoultchi AI. A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 3832-7. PMID 22357756 DOI: 10.1073/pnas.1121019109  1
2011 Baughn LB, Kalis SL, MacCarthy T, Wei L, Fan M, Bergman A, Scharff MD. Recombinase-mediated cassette exchange as a novel method to study somatic hypermutation in Ramos cells. Mbio. 2. PMID 21990614 DOI: 10.1128/mBio.00186-11  1
2011 Hou C, Bolt K, Bergman A. A general life history theory for effects of caloric restriction on health maintenance. Bmc Systems Biology. 5: 78. PMID 21595962 DOI: 10.1186/1752-0509-5-78  1
2011 Hou C, Bolt KM, Bergman A. Energetic basis of correlation between catch-up growth, health maintenance, and aging. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 66: 627-38. PMID 21393421 DOI: 10.1093/gerona/glr027  1
2011 Hou C, Bolt KM, Bergman A. A general model for ontogenetic growth under food restriction. Proceedings. Biological Sciences / the Royal Society. 278: 2881-90. PMID 21345868 DOI: 10.1098/rspb.2011.0047  1
2010 Bergman A, Casadevall A. Mammalian endothermy optimally restricts fungi and metabolic costs. Mbio. 1. PMID 21060737 DOI: 10.1128/mBio.00212-10  1
2010 Abrajano JJ, Qureshi IA, Gokhan S, Molero AE, Zheng D, Bergman A, Mehler MF. Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions. Proceedings of the National Academy of Sciences of the United States of America. 107: 16685-90. PMID 20823235 DOI: 10.1073/pnas.0906917107  1
2010 Atzmon G, Cho M, Cawthon RM, Budagov T, Katz M, Yang X, Siegel G, Bergman A, Huffman DM, Schechter CB, Wright WE, Shay JW, Barzilai N, Govindaraju DR, Suh Y. Evolution in health and medicine Sackler colloquium: Genetic variation in human telomerase is associated with telomere length in Ashkenazi centenarians. Proceedings of the National Academy of Sciences of the United States of America. 107: 1710-7. PMID 19915151 DOI: 10.1073/pnas.0906191106  1
2009 Sebastiani P, Montano M, Puca A, Solovieff N, Kojima T, Wang MC, Melista E, Meltzer M, Fischer SE, Andersen S, Hartley SH, Sedgewick A, Arai Y, Bergman A, Barzilai N, et al. RNA editing genes associated with extreme old age in humans and with lifespan in C. elegans. Plos One. 4: e8210. PMID 20011587 DOI: 10.1371/journal.pone.0008210  1
2009 Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. REST and CoREST modulate neuronal subtype specification, maturation and maintenance. Plos One. 4: e7936. PMID 19997604 DOI: 10.1371/journal.pone.0007936  1
2009 Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation. Plos One. 4: e7665. PMID 19888342 DOI: 10.1371/journal.pone.0007665  1
2009 MacCarthy T, Kalis SL, Roa S, Pham P, Goodman MF, Scharff MD, Bergman A. V-region mutation in vitro, in vivo, and in silico reveal the importance of the enzymatic properties of AID and the sequence environment. Proceedings of the National Academy of Sciences of the United States of America. 106: 8629-34. PMID 19443686 DOI: 10.1073/pnas.0903803106  1
2009 Maccarthy T, Roa S, Scharff MD, Bergman A. SHMTool: a webserver for comparative analysis of somatic hypermutation datasets. Dna Repair. 8: 137-41. PMID 18952008 DOI: 10.1016/j.dnarep.2008.09.006  1
2008 Belbin TJ, Schlecht NF, Smith RV, Adrien LR, Kawachi N, Brandwein-Gensler M, Bergman A, Chen Q, Childs G, Prystowsky MB. Site-specific molecular signatures predict aggressive disease in HNSCC. Head and Neck Pathology. 2: 243-56. PMID 20614290 DOI: 10.1007/s12105-008-0071-4  1
2008 Roa S, Avdievich E, Peled JU, Maccarthy T, Werling U, Kuang FL, Kan R, Zhao C, Bergman A, Cohen PE, Edelmann W, Scharff MD. Ubiquitylated PCNA plays a role in somatic hypermutation and class-switch recombination and is required for meiotic progression. Proceedings of the National Academy of Sciences of the United States of America. 105: 16248-53. PMID 18854411 DOI: 10.1073/pnas.0808182105  1
2007 Siegal ML, Promislow DE, Bergman A. Functional and evolutionary inference in gene networks: does topology matter? Genetica. 129: 83-103. PMID 16897451 DOI: 10.1007/s10709-006-0035-0  1
2003 Masel J, Bergman A. The evolution of the evolvability properties of the yeast prion [PSI+]. Evolution; International Journal of Organic Evolution. 57: 1498-512. PMID 12940355  1
2003 Bergman A, Siegal ML. Evolutionary capacitance as a general feature of complex gene networks. Nature. 424: 549-52. PMID 12891357 DOI: 10.1038/nature01765  1
2003 Pereira HM, Bergman A, Roughgarden J. Socially stable territories: the negotiation of space by interacting foragers. The American Naturalist. 161: 143-52. PMID 12650468 DOI: 10.1086/344919  1
2002 Siegal ML, Bergman A. Waddington's canalization revisited: developmental stability and evolution. Proceedings of the National Academy of Sciences of the United States of America. 99: 10528-32. PMID 12082173 DOI: 10.1073/pnas.102303999  1
2002 Karlin S, Brocchieri L, Bergman A, Mrazek J, Gentles AJ. Amino acid runs in eukaryotic proteomes and disease associations. Proceedings of the National Academy of Sciences of the United States of America. 99: 333-8. PMID 11782551 DOI: 10.1073/pnas.012608599  1
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