Robin Waples, Ph.D. - Publications

National Marine Fisheries Service, Newport, OR, United States 
population genetics

150 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Waples RS, Waples RK, Ward EJ. Pseudoreplication in genomics-scale datasets. Molecular Ecology Resources. PMID 34351073 DOI: 10.1111/1755-0998.13482  1
2021 Schweizer RM, Saarman N, Ramstad KM, Forester BR, Kelley JL, Hand BK, Malison RL, Ackiss AS, Watsa M, Nelson TC, Beja-Pereira A, Waples RS, Funk WC, Luikart G. Big data in conservation genomics: boosting skills, hedging bets, and staying current in the field. The Journal of Heredity. PMID 33860294 DOI: 10.1093/jhered/esab019  1
2020 Luikart G, Antao T, Hand BK, Muhlfeld CC, Boyer MC, Cosart T, Trethewey B, Al-Chockhachy R, Waples RS. Detecting population declines via monitoring the effective number of breeders (N ). Molecular Ecology Resources. PMID 32881365 DOI: 10.1111/1755-0998.13251  1
2020 Waples RS. An estimator of the Opportunity for Selection that is independent of mean fitness. Evolution; International Journal of Organic Evolution. PMID 32705674 DOI: 10.1111/evo.14061  0.01
2019 Nielsen EE, Cariani A, Aoidh EM, Maes GE, Milano I, Ogden R, Taylor M, Hemmer-Hansen J, Babbucci M, Bargelloni L, Bekkevold D, Diopere E, Grenfell L, Helyar S, Limborg MT, ... ... Waples RS, et al. Author Correction: Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Communications. 10: 5325. PMID 31757974 DOI: 10.1038/s41467-019-13399-5  1
2019 Waples RS, Naish KA, Primmer CR. Conservation and Management of Salmon in the Age of Genomics. Annual Review of Animal Biosciences. PMID 31730428 DOI: 10.1146/Annurev-Animal-021419-083617  1
2019 Lehnert SJ, Kess T, Bentzen P, Kent MP, Lien S, Gilbey J, Clément M, Jeffery NW, Waples RS, Bradbury IR. Genomic signatures and correlates of widespread population declines in salmon. Nature Communications. 10: 2996. PMID 31278264 DOI: 10.1038/S41467-019-10972-W  0.01
2019 Yang L, Waples RS, Baskett ML. Life history and temporal variability of escape events interactively determine the fitness consequences of aquaculture escapees on wild populations. Theoretical Population Biology. PMID 31028784 DOI: 10.1016/J.Tpb.2018.12.006  1
2019 Moran BM, Hench K, Waples RS, Höppner MP, Baldwin CC, McMillan WO, Puebla O. The evolution of microendemism in a reef fish (Hypoplectrus maya). Molecular Ecology. PMID 31017341 DOI: 10.1111/mec.15110  0.01
2019 Kitada S, Nakajima K, Hamasaki K, Shishidou H, Waples RS, Kishino H. Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat. Scientific Reports. 9: 5290. PMID 30918306 DOI: 10.1038/s41598-019-39050-3  0.01
2018 Waples RS, Mariani S, Benvenuto C. Consequences of sex change for effective population size. Proceedings. Biological Sciences. 285: 20181702. PMID 30963897 DOI: 10.1098/Rspb.2018.1702  1
2018 Waples RS, Lindley ST. Genomics and conservation units: The genetic basis of adult migration timing in Pacific salmonids. Evolutionary Applications. 11: 1518-1526. PMID 30344624 DOI: 10.1111/Eva.12687  0.01
2018 Waples RS, Grewe PM, Bravington MW, Hillary R, Feutry P. Robust estimates of a high / ratio in a top marine predator, southern bluefin tuna. Science Advances. 4: eaar7759. PMID 30035218 DOI: 10.1126/sciadv.aar7759  0.01
2018 Milligan BG, Archer FI, Ferchaud AL, Hand BK, Kierepka EM, Waples RS. Disentangling genetic structure for genetic monitoring of complex populations. Evolutionary Applications. 11: 1149-1161. PMID 30026803 DOI: 10.1111/Eva.12622  0.01
2018 Waples RS, Kays R, Fredrickson RJ, Pacifici K, Mills LS. Is the Red Wolf a Listable Unit Under the US Endangered Species Act? The Journal of Heredity. PMID 29889268 DOI: 10.1093/Jhered/Esy020  0.01
2018 Waples RS, Scribner K, Moore J, Draheim H, Etter D, Boersen M. Accounting for age structure and spatial structure in eco-evolutionary analyses of a large, mobile vertebrate. The Journal of Heredity. PMID 29668993 DOI: 10.1093/Jhered/Esy018  0.01
2018 Waples RS. Null alleles and FIS × FST correlations. The Journal of Heredity. PMID 29554281 DOI: 10.1093/jhered/esy013  0.01
2017 Waples RS, Elz A, Arnsberg BD, Faulkner JR, Hard JJ, Timmins-Schiffman E, Park LK. Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon. Evolutionary Applications. 10: 667-681. PMID 28717387 DOI: 10.1111/eva.12468  1
2017 Fung HC, Waples RS. Performance of IUCN proxies for generation length. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 28272844 DOI: 10.1111/cobi.12901  0.01
2017 Ackerman MW, Hand BK, Waples RK, Luikart G, Waples RS, Steele CA, Garner BA, McCane J, Campbell MR. Effective number of breeders from sibship reconstruction: empirical evaluations using hatchery steelhead. Evolutionary Applications. 10: 146-160. PMID 28127391 DOI: 10.1111/Eva.12433  1
2017 Waples RS, Anderson EC. Purging putative siblings from population genetic datasets: A cautionary view. Molecular Ecology. PMID 28099771 DOI: 10.1111/mec.14022  1
2016 Waples RS, Hindar K, Karlsson S, Hard JJ. Evaluating the Ryman-Laikre effect for marine stock enhancement and aquaculture. Current Zoology. 62: 617-627. PMID 29491949 DOI: 10.1093/cz/zow060  1
2016 Waples RS. Making sense of genetic estimates of effective population size. Molecular Ecology. 25: 4689-91. PMID 27671356 DOI: 10.1111/mec.13814  0.01
2016 Waples RK, Larson WA, Waples RS. Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci. Heredity. PMID 27553452 DOI: 10.1038/hdy.2016.60  0.01
2016 Kuparinen A, Hutchings JA, Waples RS. Harvest-induced evolution and effective population size. Evolutionary Applications. 9: 658-72. PMID 27247617 DOI: 10.1111/eva.12373  1
2016 Waples RS. How Plasticity and Evolution Work in the Real World. The Journal of Heredity. 107: 1-2. PMID 26671767 DOI: 10.1093/jhered/esv093  0.01
2016 Kuparinen A, Hutchings JA, Waples RS. Harvest-induced evolution and effective population size Evolutionary Applications. DOI: 10.1111/eva.12373  1
2016 Boyd C, Demaster DP, Waples RS, Ward EJ, Taylor BL. Consistent Extinction Risk Assessment under the U.S. Endangered Species Act Conservation Letters. DOI: 10.1111/Conl.12269  1
2016 Busch DS, Griffis R, Link J, Abrams K, Baker J, Brainard RE, Ford M, Hare JA, Himes-Cornell A, Hollowed A, Mantua NJ, McClatchie S, McClure M, Nelson MW, Osgood K, ... ... Waples RS, et al. Climate science strategy of the US National Marine Fisheries Service Marine Policy. 74: 58-67. DOI: 10.1016/J.Marpol.2016.09.001  1
2016 Stockwell BL, Larson WA, Waples RK, Abesamis RA, Seeb LW, Carpenter KE. The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines Conservation Genetics. 17: 239-249. DOI: 10.1007/s10592-015-0776-3  1
2015 Waters CD, Hard JJ, Brieuc MS, Fast DE, Warheit KI, Waples RS, Knudsen CM, Bosch WJ, Naish KA. Effectiveness of managed gene flow in reducing genetic divergence associated with captive breeding. Evolutionary Applications. 8: 956-71. PMID 26640521 DOI: 10.1111/eva.12331  1
2015 McKinney GJ, Seeb LW, Larson WA, Gomez-Uchida D, Limborg MT, Brieuc M, Everett MV, Naish KA, Waples RK, Seeb JE. An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha). Molecular Ecology Resources. PMID 26490135 DOI: 10.1111/1755-0998.12479  1
2015 Limborg MT, Waples RK, Allendorf FW, Seeb JE. Linkage Mapping Reveals Strong Chiasma Interference in Sockeye Salmon: Implications for Interpreting Genomic Data. G3 (Bethesda, Md.). 5: 2463-73. PMID 26384769 DOI: 10.1534/G3.115.020222  1
2015 Waples RK, Seeb LW, Seeb JE. Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta). Molecular Ecology Resources. PMID 25712438 DOI: 10.1111/1755-0998.12394  1
2015 Waples RS. Testing for Hardy-Weinberg proportions: have we lost the plot? The Journal of Heredity. 106: 1-19. PMID 25425676 DOI: 10.1093/jhered/esu062  1
2015 Waples RS, Adams PB, Bohnsack JA, Taylor BL. When is a species at risk in 'all or a significant portion of its range'? Endangered Species Research. 27: 189-192. DOI: 10.3354/esr00669  1
2015 Shelton AO, Hutchings JA, Waples RS, Keith DM, Akçakaya HR, Dulvy NK. Maternal age effects on Atlantic cod recruitment and implications for future population trajectories Ices Journal of Marine Science. 72: 1769-1778. DOI: 10.1093/Icesjms/Fsv058  1
2015 Fisch KM, Kozfkay CC, Ivy JA, Ryder OA, Waples RS. Fish Hatchery Genetic Management Techniques: Integrating Theory with Implementation North American Journal of Aquaculture. 77: 343-357. DOI: 10.1080/15222055.2014.999846  1
2015 Mantua NJ, Crozier LG, Reed TE, Schindler DE, Waples RS. Response of chinook salmon to climate change Nature Climate Change. 5: 613-615. DOI: 10.1038/nclimate2670  1
2015 Keith D, Akçakaya HR, Butchart SHM, Collen B, Dulvy NK, Holmes EE, Hutchings JA, Keinath D, Schwartz MK, Shelton AO, Waples RS. Temporal correlations in population trends: Conservation implications from time-series analysis of diverse animal taxa Biological Conservation. 192: 247-257. DOI: 10.1016/J.Biocon.2015.09.021  1
2014 Landguth EL, Muhlfeld CC, Waples RS, Jones L, Lowe WH, Whited D, Lucotch J, Neville H, Luikart G. Combining demographic and genetic factors to assess population vulnerability in stream species. Ecological Applications : a Publication of the Ecological Society of America. 24: 1505-24. PMID 29160670 DOI: 10.1890/13-0499.1  1
2014 Limborg MT, Waples RK, Seeb JE, Seeb LW. Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation. The Journal of Heredity. 105: 741-51. PMID 25292170 DOI: 10.1093/jhered/esu063  1
2014 Seeb LW, Waples RK, Limborg MT, Warheit KI, Pascal CE, Seeb JE. Parallel signatures of selection in temporally isolated lineages of pink salmon. Molecular Ecology. 23: 2473-85. PMID 24762204 DOI: 10.1111/mec.12769  1
2014 Waples RS, Antao T, Luikart G. Effects of overlapping generations on linkage disequilibrium estimates of effective population size. Genetics. 197: 769-80. PMID 24717176 DOI: 10.1534/genetics.114.164822  1
2014 Larson WA, Seeb LW, Everett MV, Waples RK, Templin WD, Seeb JE. Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications. 7: 355-69. PMID 24665338 DOI: 10.1111/eva.12128  1
2014 Waples RS, Antao T. Intermittent breeding and constraints on litter size: consequences for effective population size per generation (Ne ) and per reproductive cycle (Nb ). Evolution; International Journal of Organic Evolution. 68: 1722-34. PMID 24611912 DOI: 10.1111/evo.12384  1
2014 Waples R. Message from the AGA President 2014. The Journal of Heredity. 105: 147. PMID 24520106 DOI: 10.1093/jhered/esu010  1
2014 Do C, Waples RS, Peel D, Macbeth GM, Tillett BJ, Ovenden JR. NeEstimator v2: re-implementation of software for the estimation of contemporary effective population size (Ne ) from genetic data. Molecular Ecology Resources. 14: 209-14. PMID 23992227 DOI: 10.1111/1755-0998.12157  1
2014 Landguth EL, Muhlfeld CC, Waples RS, Jones L, Lowe WH, Whited D, Lucotch J, Neville H, Luikart G. Combining demographic and genetic factors to assess population vulnerability in stream species Ecological Applications. 24: 1505-1524.  1
2013 Waples RS. Introduction. Conservation Biology : the Journal of the Society For Conservation Biology. 27: 1137. PMID 24299079 DOI: 10.1111/cobi.12180  1
2013 Baskett ML, Burgess SC, Waples RS. Assessing strategies to minimize unintended fitness consequences of aquaculture on wild populations. Evolutionary Applications. 6: 1090-108. PMID 24187590 DOI: 10.1111/Eva.12089  1
2013 Hedrick PW, Allendorf FW, Waples RS. Ecology: Genetic engineering in conservation. Nature. 502: 303. PMID 24132282 DOI: 10.1038/502303B  1
2013 Petrou EL, Hauser L, Waples RS, Seeb JE, Templin WD, Gomez-Uchida D, Seeb LW. Secondary contact and changes in coastal habitat availability influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta). Molecular Ecology. 22: 5848-60. PMID 24118255 DOI: 10.1111/Mec.12543  1
2013 Burgess SC, Waples RS, Baskett ML. Local adaptation when competition depends on phenotypic similarity. Evolution; International Journal of Organic Evolution. 67: 3012-22. PMID 24094350 DOI: 10.1111/Evo.12176  1
2013 Waples RS, Luikart G, Faulkner JR, Tallmon DA. Simple life-history traits explain key effective population size ratios across diverse taxa. Proceedings. Biological Sciences / the Royal Society. 280: 20131339. PMID 23926150 DOI: 10.1098/Rspb.2013.1339  1
2013 Sultan SE, Horgan-Kobelski T, Nichols LM, Riggs CE, Waples RK. A resurrection study reveals rapid adaptive evolution within populations of an invasive plant. Evolutionary Applications. 6: 266-78. PMID 23798976 DOI: 10.1111/j.1752-4571.2012.00287.x  1
2013 Neel MC, McKelvey K, Ryman N, Lloyd MW, Short Bull R, Allendorf FW, Schwartz MK, Waples RS. Estimation of effective population size in continuously distributed populations: there goes the neighborhood. Heredity. 111: 189-99. PMID 23652561 DOI: 10.1038/Hdy.2013.37  1
2013 Peel D, Waples RS, Macbeth GM, Do C, Ovenden JR. Accounting for missing data in the estimation of contemporary genetic effective population size (N(e) ). Molecular Ecology Resources. 13: 243-53. PMID 23280157 DOI: 10.1111/1755-0998.12049  1
2013 Baskett ML, Waples RS. Evaluating alternative strategies for minimizing unintended fitness consequences of cultured individuals on wild populations. Conservation Biology : the Journal of the Society For Conservation Biology. 27: 83-94. PMID 23082984 DOI: 10.1111/J.1523-1739.2012.01949.X  1
2013 Waples RS, Nammack M, Cochrane JF, Hutchings JA. A tale of two acts: Endangered species listing practices in Canada and the United States Bioscience. 63: 723-734. DOI: 10.1525/bio.2013.63.9.8  1
2013 van Doornik DM, Eddy DL, Waples RS, Boe SJ, Hoffnagle TL, Berntson EA, Moran P. Genetic Monitoring of Threatened Chinook Salmon Populations: Estimating Introgression of Nonnative Hatchery Stocks and Temporal Genetic Changes North American Journal of Fisheries Management. 33: 693-706. DOI: 10.1080/02755947.2013.790861  1
2013 Nielsen EE, Cariani A, Mac Aoidh E, Maes GE, Milano I, Ogden R, Taylor M, Hemmer-Hansen J, Babbucci M, Bargelloni L, Bekkevold D, Diopere E, Grenfell L, Helyar S, Limborg MT, ... ... Waples RS, et al. Corrigendum: Gene-associated markers provide tools for tackling illegal fishing and false eco-certification Nature Communications. 4. DOI: 10.1038/ncomms2975  1
2012 Vrijenhoek RC, Waples RS. Popular misconceptions. Molecular Ecology. 21: 4155-6. PMID 22924793 DOI: 10.1111/J.1365-294X.2012.05658.X  1
2012 Christie MR, Marine ML, French RA, Waples RS, Blouin MS. Effective size of a wild salmonid population is greatly reduced by hatchery supplementation. Heredity. 109: 254-60. PMID 22805657 DOI: 10.1038/Hdy.2012.39  1
2012 Hutchings JA, Butchart SH, Collen B, Schwartz MK, Waples RS. Red flags: correlates of impaired species recovery. Trends in Ecology & Evolution. 27: 542-6. PMID 22784411 DOI: 10.1016/J.Tree.2012.06.005  1
2012 Nielsen EE, Cariani A, Mac Aoidh E, Maes GE, Milano I, Ogden R, Taylor M, Hemmer-Hansen J, Babbucci M, Bargelloni L, Bekkevold D, Diopere E, Grenfell L, Helyar S, Limborg MT, ... ... Waples RS, et al. Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Communications. 3: 851. PMID 22617291 DOI: 10.1038/ncomms1845  1
2012 Tallmon DA, Waples RS, Gregovich D, Schwartz MK. Detecting population recovery using gametic disequilibrium-based effective population size estimates Conservation Genetics Resources. 4: 987-989. DOI: 10.1007/S12686-012-9689-3  1
2012 Kalinowski ST, van Doornik DM, Kozfkay CC, Waples RS. Genetic diversity in the Snake River sockeye salmon captive broodstock program as estimated from broodstock records Conservation Genetics. 13: 1183-1193. DOI: 10.1007/s10592-012-0363-9  1
2011 Waples RS, Do C, Chopelet J. Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach. Ecology. 92: 1513-22. PMID 21870625  1
2011 Waples RS, England PR. Estimating contemporary effective population size on the basis of linkage disequilibrium in the face of migration. Genetics. 189: 633-44. PMID 21840864 DOI: 10.1534/genetics.111.132233  1
2011 Reed TE, Schindler DE, Hague MJ, Patterson DA, Meir E, Waples RS, Hinch SG. Time to evolve? Potential evolutionary responses of fraser river sockeye salmon to climate change and effects on persistence. Plos One. 6: e20380. PMID 21738573 DOI: 10.1371/Journal.Pone.0020380  1
2011 Waples RS, Waples RK. Inbreeding effective population size and parentage analysis without parents. Molecular Ecology Resources. 11: 162-71. PMID 21429172 DOI: 10.1111/j.1755-0998.2010.02942.x  1
2011 Hare MP, Nunney L, Schwartz MK, Ruzzante DE, Burford M, Waples RS, Ruegg K, Palstra F. Understanding and estimating effective population size for practical application in marine species management. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 438-49. PMID 21284731 DOI: 10.1111/J.1523-1739.2010.01637.X  1
2011 Reed TE, Schindler DE, Waples RS. Interacting effects of phenotypic plasticity and evolution on population persistence in a changing climate. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 56-63. PMID 20646016 DOI: 10.1111/j.1523-1739.2010.01552.x  1
2011 Waples RS, Do C, Chopelet J. Calculating N e and N e/N in age-structured populations: A hybrid Felsenstein-Hill approach Ecology. 92: 1513-1522. DOI: 10.1890/10-1796.1  1
2011 van DM, Waples R, Baird MC, Moran P, Berntson EA. Genetic monitoring reveals genetic stability within and among threatened Chinook salmon populations in the Salmon River, Idaho North American Journal of Fisheries Management. 31: 96-105. DOI: 10.1080/02755947.2011.562443  1
2011 Martinsohn JT, Geffen AJ, Maes GE, Nielsen EE, Ogden R, Waples RS, Carvalho GR. Tracing fish and fish products from ocean to fork using advanced molecular technologies Food Chain Integrity: a Holistic Approach to Food Traceability, Safety, Quality and Authenticity. 259-282. DOI: 10.1016/B978-0-85709-068-3.50015-9  1
2011 Hammond P, Leaper R, Lusseau D, Parsons C, Simmonds M, Brownell R, Palka D, Baker S, Bickham J, Breiwick J, Clapham P, Ferguson M, Fleming A, George C, Givens G, ... ... Waples R, et al. Plenary report Journal of Cetacean Research and Management. 12: 1-364.  1
2010 Waples RS, Do C. Linkage disequilibrium estimates of contemporary N e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications. 3: 244-62. PMID 25567922 DOI: 10.1111/j.1752-4571.2009.00104.x  1
2010 Waples RS. Spatial-temporal stratifications in natural populations and how they affect understanding and estimation of effective population size. Molecular Ecology Resources. 10: 785-96. PMID 21565090 DOI: 10.1111/j.1755-0998.2010.02876.x  1
2010 Tallmon DA, Gregovich D, Waples RS, Scott Baker C, Jackson J, Taylor BL, Archer E, Martien KK, Allendorf FW, Schwartz MK. When are genetic methods useful for estimating contemporary abundance and detecting population trends? Molecular Ecology Resources. 10: 684-92. PMID 21565073 DOI: 10.1111/J.1755-0998.2010.02831.X  1
2010 Laikre L, Schwartz MK, Waples RS, Ryman N. Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals. Trends in Ecology & Evolution. 25: 520-9. PMID 20688414 DOI: 10.1016/j.tree.2010.06.013  1
2010 Waples RS. High-grading bias: subtle problems with assessing power of selected subsets of loci for population assignment. Molecular Ecology. 19: 2599-601. PMID 20636893 DOI: 10.1111/j.1365-294X.2010.04675.x  1
2010 Waples RS, Jensen DW, McClure M. Eco-evolutionary dynamics: fluctuations in population growth rate reduce effective population size in chinook salmon. Ecology. 91: 902-14. PMID 20426347 DOI: 10.1890/09-0366.1  1
2010 Laikre L, Allendorf FW, Aroner LC, Baker CS, Gregovich DP, Hansen MM, Jackson JA, Kendall KC, McKelvey K, Neel MC, Olivieri I, Ryman N, Schwartz MK, Bull RS, Stetz JB, ... ... Waples RS, et al. Neglect of genetic diversity in implementation of the convention on biological diversity. Conservation Biology : the Journal of the Society For Conservation Biology. 24: 86-8. PMID 20028412 DOI: 10.1111/J.1523-1739.2009.01425.X  1
2010 Waples RS, McClure MM, Wainwright TC, McElhany P, Lawson PW. Integrating evolutionary considerations into recovery planning for Pacific salmon Molecular Approaches in Natural Resource Conservation and Management. 239-266. DOI: 10.1017/CBO9780511777592.011  1
2010 England PR, Luikart G, Waples RS. Early detection of population fragmentation using linkage disequilibrium estimation of effective population size Conservation Genetics. 11: 2425-2430. DOI: 10.1007/s10592-010-0112-x  1
2009 Waples RS, Faulkner JR. Modelling evolutionary processes in small populations: not as ideal as you think. Molecular Ecology. 18: 1834-47. PMID 19344355 DOI: 10.1111/j.1365-294X.2009.04157.x  1
2009 Waples RS, Beechie T, Pess GR. Evolutionary history, habitat disturbance regimes, and anthropogenic changes: What do these mean for resilience of Pacific salmon populations? Ecology and Society. 14. DOI: 10.5751/ES-02626-140103  1
2009 Andersen LW, Born EW, Doidge DW, Gjertz I, Wiig, Waples RS. Genetic signals of historic and recent migration between sub-populations of Atlantic walrus Odobenus rosmarus rosmarus west and east of Greenland Endangered Species Research. 9: 197-211. DOI: 10.3354/esr00242  1
2009 Chopelet J, Waples RS, Mariani S. Sex change and the genetic structure of marine fish populations Fish and Fisheries. 10: 329-343. DOI: 10.1111/J.1467-2979.2009.00329.X  1
2008 Williams JG, Zabel RW, Waples RS, Hutchings JA, Connor WP. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications. 1: 271-85. PMID 25567631 DOI: 10.1111/j.1752-4571.2008.00027.x  1
2008 Waples RS, Pess GR, Beechie T. Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications. 1: 189-206. PMID 25567626 DOI: 10.1111/j.1752-4571.2008.00023.x  1
2008 Waples RS, Hendry AP. Special Issue: Evolutionary perspectives on salmonid conservation and management. Evolutionary Applications. 1: 183-8. PMID 25567625 DOI: 10.1111/J.1752-4571.2008.00035.X  0.01
2008 Waples RS, DO C. ldne: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources. 8: 753-6. PMID 21585883 DOI: 10.1111/j.1755-0998.2007.02061.x  1
2008 Waples RS, Zabel RW, Scheuerell MD, Sanderson BL. Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system. Molecular Ecology. 17: 84-96. PMID 18268786 DOI: 10.1111/J.1365-294X.2007.03510.X  1
2008 Anderson EC, Waples RS, Kalinowski ST. An improved method for predicting the accuracy of genetic stock identification Canadian Journal of Fisheries and Aquatic Sciences. 65: 1475-1486. DOI: 10.1139/F08-049  1
2008 Waples RS, Adams PB, Bohnsack J, Taylor BL. Legal viability, societal values, and SPOIR: Response to D'Elia et al. Conservation Biology. 22: 1075-1077. DOI: 10.1111/j.1523-1739.2008.00980.x  1
2008 Hauser L, Waples RS, Carvalho GR. Fish and Fisheries: Editorial Fish and Fisheries. 9: 331-332. DOI: 10.1111/j.1467-2979.2008.00307.x  1
2008 Waples RS, Punt AE, Cope JM. Integrating genetic data into management of marine resources: How can we do it better? Fish and Fisheries. 9: 423-449. DOI: 10.1111/j.1467-2979.2008.00303.x  1
2008 Waples RS, Dickhoff WW, Hauser L, Ryman N. Six decades of fishery genetics: Taking stock Fisheries. 33: 76-79.  1
2007 Waples RS, Adams PB, Bohnsack J, Taylor BL. Normativity redux. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 1649-50. PMID 18173489 DOI: 10.1111/j.1523-1739.2007.00819.x  1
2007 Gustafson RG, Waples RS, Myers JM, Weitkamp LA, Bryant GJ, Johnson OW, Hard JJ. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 1009-20. PMID 17650251 DOI: 10.1111/j.1523-1739.2007.00693.x  1
2007 Waples RS, Adams PB, Bohnsack J, Taylor BL. A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 964-74. PMID 17650247 DOI: 10.1111/j.1523-1739.2007.00730.x  1
2007 Araki H, Waples RS, Blouin MS. A potential bias in the temporal method for estimating Ne in admixed populations under natural selection. Molecular Ecology. 16: 2261-71. PMID 17561889 DOI: 10.1111/j.1365-294X.2007.03307.x  1
2007 Faubet P, Waples RS, Gaggiotti OE. Evaluating the performance of a multilocus Bayesian method for the estimation of migration rates. Molecular Ecology. 16: 1149-66. PMID 17391403 DOI: 10.1111/J.1365-294X.2007.03218.X  1
2007 Araki H, Waples RS, Ardren WR, Cooper B, Blouin MS. Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Molecular Ecology. 16: 953-66. PMID 17305853 DOI: 10.1111/j.1365-294X.2006.03206.x  1
2007 Waples RS, Yokota M. Temporal estimates of effective population size in species with overlapping generations. Genetics. 175: 219-33. PMID 17110487 DOI: 10.1534/genetics.106.065300  1
2007 Schwartz MK, Luikart G, Waples RS. Genetic monitoring as a promising tool for conservation and management. Trends in Ecology & Evolution. 22: 25-33. PMID 16962204 DOI: 10.1016/j.tree.2006.08.009  1
2007 Waples RS, Masuda M, Pella J. SALMONNb: A program for computing cohort-specific effective population sizes (Nb) in Pacific salmon and other semelparous species using the temporal method Molecular Ecology Notes. 7: 21-24. DOI: 10.1111/j.1471-8286.2006.01567.x  1
2006 Waples RS, Gaggiotti O. What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology. 15: 1419-39. PMID 16629801 DOI: 10.1111/J.1365-294X.2006.02890.X  1
2006 Waples RS. Seed banks, salmon, and sleeping genes: effective population size in semelparous, age-structured species with fluctuating abundance. The American Naturalist. 167: 118-35. PMID 16475104 DOI: 10.1086/498584  1
2006 Waples RS. A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci Conservation Genetics. 7: 167-184. DOI: 10.1007/s10592-005-9100-y  1
2006 Dawson MN, Waples RS, Bernardi G. Phylogeography The Ecology of Marine Fishes: California and Adjacent Waters. 26-54.  1
2005 Manel S, Gaggiotti OE, Waples RS. Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution. 20: 136-42. PMID 16701357 DOI: 10.1016/J.Tree.2004.12.004  1
2005 Waples RS. Genetic estimates of contemporary effective population size: to what time periods do the estimates apply? Molecular Ecology. 14: 3335-52. PMID 16156807 DOI: 10.1111/j.1365-294X.2005.02673.x  1
2004 Tallmon DA, Luikart G, Waples RS. The alluring simplicity and complex reality of genetic rescue. Trends in Ecology & Evolution. 19: 489-96. PMID 16701312 DOI: 10.1016/J.Tree.2004.07.003  1
2004 Waples RS, Teel DJ, Myers JM, Marshall AR. Life-history divergence in Chinook salmon: historic contingency and parallel evolution. Evolution; International Journal of Organic Evolution. 58: 386-403. PMID 15068355 DOI: 10.1111/j.0014-3820.2004.tb01654.x  1
2004 Johnson O, Neely K, Waples R. Lopsided fish in the Snake River Basin - Fluctuating asymmetry as a way of assessing impact of hatchery supplementation in chinook salmon, Oncorhynchus tshawytscha Environmental Biology of Fishes. 69: 379-393. DOI: 10.1023/B:EBFI.0000022892.42826.1a  1
2003 Hey J, Waples RS, Arnold ML, Butlin RK, Harrison RG. Understanding and confronting species uncertainty in biology and conservation Trends in Ecology and Evolution. 18: 597-603. DOI: 10.1016/J.Tree.2003.08.014  1
2002 Waples RS. Evaluating the effect of stage-specific survivorship on the N(e)/N ratio. Molecular Ecology. 11: 1029-37. PMID 12090236 DOI: 10.1046/j.1365-294X.2002.01504.x  1
2002 Waples RS. Effective size of fluctuating salmon populations. Genetics. 161: 783-91. PMID 12072473  1
2002 Kalinowski ST, Waples RS. Relationship of effective to census size in fluctuating populations Conservation Biology. 16: 129-136. DOI: 10.1046/j.1523-1739.2002.00134.x  1
2001 Gustafson RG, Waples R, Kalinowski ST, Winans GA. Evolution of sockeye salmon ecotypes. Science (New York, N.Y.). 291: 251-2. PMID 11253207  1
2001 Waples RS, Gustafson RG, Weitkamp LA, Myers JM, Jjohnson OW, Busby PJ, Hard JJ, Bryant GJ, Waknitz FW, Nelly K, Teel D, Grant WS, Winans GA, Phelps S, Marshall A, et al. Characterizing diversity in salmon from the Pacific Northwest Journal of Fish Biology. 59: 1-41. DOI: 10.1111/j.1095-8649.2001.tb01376.x  1
1999 Jonsson B, Waples RS, Friedland KD. Extinction considerations for diadromous fishes Ices Journal of Marine Science. 56: 405-409. DOI: 10.1006/jmsc.1999.0483  1
1999 Waples RS. Dispelling some myths about hatcheries Fisheries. 24: 12-21.  1
1998 Waples RS. Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species Journal of Heredity. 89: 438-450. DOI: 10.1093/jhered/89.5.438  1
1998 Wainwright TC, Waples RS. Prioritizing Pacific salmon stocks for conservation: Response to Allendorf et al. Conservation Biology. 12: 1144-1147. DOI: 10.1046/j.1523-1739.1998.97385.x  1
1998 Waples RS. Evolutionarily significant units, distinct population segments, and the endangered species act: Reply to Pennock and Dimmick Conservation Biology. 12: 718-721.  1
1997 Moran P, Dightman DA, Waples RS, Park LK. PCR-RFLP analysis reveals substantial population-level variation in the introns of Pacific salmon (Oncorhynchus spp.) Molecular Marine Biology and Biotechnology. 6: 315-327.  1
1996 Winans GA, Aebersold PB, Waples RS. Allozyme variability of Oncorhynchus nerka in the Pacific Northwest, with special consideration to populations of Redfish Lake, Idaho Transactions of the American Fisheries Society. 125: 645-663.  1
1992 Hedgecock D, Chow V, Waples RS. Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies Aquaculture. 108: 215-232. DOI: 10.1016/0044-8486(92)90108-W  1
1991 Waples RS. HETEROZYGOSITY AND LIFE-HISTORY VARIATION IN BONY FISHES: AN ALTERNATIVE VIEW. Evolution; International Journal of Organic Evolution. 45: 1275-1280. PMID 28564172 DOI: 10.1111/j.1558-5646.1991.tb04392.x  0.01
1991 Waples RS. Genetic interactions between hatchery and wild salmonids: lessons from the Pacific Northwest Canadian Journal of Fisheries and Aquatic Sciences. 48: 124-133. DOI: 10.1139/f91-311  1
1991 Waples RS. Genetic methods for estimating the effective size of cetacean populations Report - International Whaling Commission, Special Issue. 13: 279-300.  1
1991 Waples RS. Pacific salmon, Oncorhynchus spp., and the definition of "species' under the Endangered Species Act Marine Fisheries Review. 53: 11-22.  1
1990 Waples RS, Winans GA, Utter FM, Mahnken C. Genetic approaches to the management of pacific salmon Fisheries. 15: 19-25. DOI: 10.1577/1548-8446(1990)015<0019:GATTMO>2.0.CO;2  1
1990 Waples RS. Conservation genetics of Pacific salmon. III. Estimating effective population size Journal of Heredity. 81: 277-289. DOI: 10.1093/oxfordjournals.jhered.a110990  1
1990 Waples RS. Conservation genetics of Pacific salmon. II. Effective population size and the rate of loss of genetic variability Journal of Heredity. 81: 267-276. DOI: 10.1093/oxfordjournals.jhered.a110989  1
1989 Waples RS. TEMPORAL VARIATION IN ALLELE FREQUENCIES: TESTING THE RIGHT HYPOTHESIS. Evolution; International Journal of Organic Evolution. 43: 1236-1251. PMID 28564497 DOI: 10.1111/j.1558-5646.1989.tb02571.x  0.01
1989 Waples RS. A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics. 121: 379-91. PMID 2731727  1
1988 Waples RS. Estimation of allele frequencies at isoloci. Genetics. 118: 371-84. PMID 3360307  1
1988 Waples RS, Randall JE. A revision of the Hawaiian lizardfishes of the genus Synodus, with descriptions of four new species Pacific Science. 42: 178-213.  1
1987 Waples RS. A MULTISPECIES APPROACH TO THE ANALYSIS OF GENE FLOW IN MARINE SHORE FISHES. Evolution; International Journal of Organic Evolution. 41: 385-400. PMID 28568763 DOI: 10.1111/j.1558-5646.1987.tb05805.x  0.01
1987 Waples RS. A multispecies approach to the analysis of gene flow in marine shore fishes Evolution. 41: 385-400.  1
1986 Wilson RR, Waples RS. Reply to Stockton and DeLaca Deep Sea Research Part a, Oceanographic Research Papers. 33: 995-996. DOI: 10.1016/0198-0149(86)90013-0  1
1984 Wilson RR, Waples RS. Electrophoretic and biometric variability in the abyssal grenadier Coryphaenoides armatus of the western North Atlantic, eastern South Pacific and eastern North Pacific Oceans Marine Biology. 80: 227-237. DOI: 10.1007/Bf00392817  1
1983 Wilson RR, Waples RS. Distribution, morphology, and biochemical genetics of Coryphaenoides armatus and C. yaquinae (Pisces:Macrouridae) in the central and eastern North Pacific Deep Sea Research Part a, Oceanographic Research Papers. 30: 1127-1145. DOI: 10.1016/0198-0149(83)90092-4  1
1982 Shaklee JB, Tamaru CS, Waples RS. Speciation and evolution of marine fishes studied by the electrophoretic analysis of proteins Pacific Science. 36: 141-157.  1
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