Christophe J. Douady, Ph.D. - Publications

Affiliations: 
LEHNA, UMR5023, Biology department Université Lyon 1, Université de Lyon 

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gauthier M, Konecny-Dupré L, Nguyen A, Elbrecht V, Datry T, Douady CJ, Lefébure T. Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol. Molecular Ecology Resources. PMID 31484209 DOI: 10.1111/1755-0998.13088  0.92
2019 Alonso L, Pommier T, Kaufmann B, Dubost A, Chapulliot D, Doré J, Douady CJ, Moënne-Loccoz Y. Anthropization level of Lascaux Cave microbiome shown by regional-scale comparisons of pristine and anthropized caves. Molecular Ecology. PMID 31177607 DOI: 10.1111/mec.15144  0.72
2019 Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Molecular Biology and Evolution. PMID 30690454 DOI: 10.1093/molbev/msy247  0.92
2018 Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods. Molecular Biology and Evolution. PMID 30247705 DOI: 10.1093/molbev/msy184  0.92
2017 Lefébure T, Morvan C, Malard F, François C, Konecny-Dupré L, Guéguen L, Weiss-Gayet M, Seguin-Orlando A, Ermini L, Der Sarkissian C, Charrier NP, Eme D, Mermillod-Blondin F, Duret L, Vieira C, ... ... Douady C, et al. Less effective selection leads to larger genomes. Genome Research. PMID 28424354 DOI: 10.1101/gr.212589.116  0.92
2016 Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T. No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes. Molecular Biology and Evolution. PMID 27401232 DOI: 10.1093/molbev/msw131  0.92
2016 Morard R, Escarguel G, Weiner AK, André A, Douady CJ, Wade CM, Darling KF, Ujiié Y, Seears HA, Quillévéré F, de Garidel-Thoron T, de Vargas C, Kucera M. Nomenclature for the Nameless: a Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera. Systematic Biology. PMID 27073250 DOI: 10.1093/sysbio/syw031  0.48
2015 Morard R, Darling KF, Mahé F, Audic S, Ujiié Y, Weiner AK, André A, Seears HA, Wade CM, Quillévéré F, Douady CJ, Escarguel G, de Garidel-Thoron T, Siccha M, Kucera M, et al. PFR(2) : a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution. Molecular Ecology Resources. PMID 25828689 DOI: 10.1111/1755-0998.12410  0.92
2015 Der Sarkissian C, Vilstrup JT, Schubert M, Seguin-Orlando A, Eme D, Weinstock J, Alberdi MT, Martin F, Lopez PM, Prado JL, Prieto A, Douady CJ, Stafford TW, Willerslev E, Orlando L. Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids. Biology Letters. 11. PMID 25762573 DOI: 10.1098/rsbl.2014.1058  0.92
2015 Francois CM, Mermillod-Blondin F, Malard F, Fourel F, Lécuyer C, Douady CJ, Simon L. Trophic ecology of groundwater species reveals specialization in a low-productivity environment Functional Ecology. DOI: 10.1111/1365-2435.12484  0.92
2014 André A, Quillévéré F, Morard R, Ujiié Y, Escarguel G, de Vargas C, de Garidel-Thoron T, Douady CJ. SSU rDNA divergence in planktonic foraminifera: molecular taxonomy and biogeographic implications. Plos One. 9: e104641. PMID 25119900 DOI: 10.1371/journal.pone.0104641  0.92
2014 Eme D, Malard F, Colson-Proch C, Jean P, Calvignac S, Konecny-Dupré L, Hervant F, Douady CJ. Integrating phylogeography, physiology and habitat modelling to explore species range determinants Journal of Biogeography. 41: 687-699. DOI: 10.1111/jbi.12237  0.92
2014 Mondy N, Grossi V, Cathalan E, Delbecque JP, Mermillod-Blondin F, Douady CJ. Sterols and steroids in a freshwater crustacean (Proasellus meridianus): Hormonal response to nutritional input Invertebrate Biology. 133: 99-107. DOI: 10.1111/ivb.12044  0.92
2013 Eme D, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ. Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology. 22: 5685-99. PMID 24102689 DOI: 10.1111/mec.12520  0.92
2013 Capderrey C, Kaufmann B, Jean P, Malard F, Konecny-Dupré L, Lefébure T, Douady CJ. Microsatellite development and first population size estimates for the groundwater isopod Proasellus walteri. Plos One. 8: e76213. PMID 24086709 DOI: 10.1371/journal.pone.0076213  0.92
2013 Morvan C, Malard F, Paradis E, Lefébure T, Konecny-Dupré L, Douady CJ. Timetree of Aselloidea reveals species diversification dynamics in groundwater. Systematic Biology. 62: 512-22. PMID 23461879 DOI: 10.1093/sysbio/syt015  0.92
2013 Mermillod-Blondin F, Lefour C, Lalouette L, Renault D, Malard F, Simon L, Douady CJ. Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment. The Journal of Experimental Biology. 216: 1683-94. PMID 23348950 DOI: 10.1242/jeb.081232  0.92
2013 Quillévéré F, Morard R, Escarguel G, Douady CJ, Ujiié Y, de Garidel-Thoron T, de Vargas C. Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: A perspective on the morphological species concept in planktonic foraminifera Palaeogeography, Palaeoclimatology, Palaeoecology. 391: 2-12. DOI: 10.1016/j.palaeo.2011.03.013  0.92
2012 André A, Weiner A, Quillévéré F, Aurahs R, Morard R, Douady CJ, De Garidel-Thoron T, Escarguel G, De Vargas C, Kucera M. The cryptic and the apparent reversed: Lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer Paleobiology. 39: 21-39. DOI: 10.1666/0094-8373-39.1.21  0.92
2011 Morard R, Quillévéré F, Douady CJ, de Vargas C, de Garidel-Thoron T, Escarguel G. Worldwide genotyping in the planktonic foraminifer Globoconella inflata: implications for life history and paleoceanography. Plos One. 6: e26665. PMID 22028935 DOI: 10.1371/journal.pone.0026665  0.92
2011 Puijalon S, Bouma TJ, Douady CJ, van Groenendael J, Anten NP, Martel E, Bornette G. Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off. The New Phytologist. 191: 1141-9. PMID 21585390 DOI: 10.1111/j.1469-8137.2011.03763.x  0.92
2011 Calvignac S, Konecny L, Malard F, Douady CJ. Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts). Mitochondrion. 11: 246-54. PMID 21047564 DOI: 10.1016/j.mito.2010.10.004  0.92
2010 Colson-Proch C, Morales A, Hervant F, Konecny L, Moulin C, Douady CJ. First cellular approach of the effects of global warming on groundwater organisms: a study of the HSP70 gene expression. Cell Stress & Chaperones. 15: 259-70. PMID 19777376 DOI: 10.1007/s12192-009-0139-4  0.92
2010 Statzner B, Douady CJ, Konecny L, Dolédec S. Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River Zootaxa. 51-68. DOI: 10.11646/zootaxa.2556.1.3  0.92
2009 Colson-Proch C, Renault D, Gravot A, Douady CJ, Hervant F. Do current environmental conditions explain physiological and metabolic responses of subterranean crustaceans to cold? The Journal of Experimental Biology. 212: 1859-68. PMID 19483004 DOI: 10.1242/jeb.027987  0.92
2009 Voituron Y, Barré H, Ramløv H, Douady CJ. Freeze tolerance evolution among anurans: Frequency and timing of appearance. Cryobiology. 58: 241-7. PMID 19444965 DOI: 10.1016/j.cryobiol.2009.01.001  0.92
2009 Trontelj P, Douady CJ, Fišer C, Gibert J, Gori?ki S, Lefébure T, Sket B, Zakšek V. A molecular test for cryptic diversity in ground water: How large are the ranges of macro-stygobionts? Freshwater Biology. 54: 727-744. DOI: 10.1111/j.1365-2427.2007.01877.x  0.92
2009 Lalouette L, Kaufmann B, Konecny L, Renault D, Douady CJ. Characterization and PCR multiplexing of 14 new polymorphic microsatellite loci for the invasive subantarctic carabid Merizodus soledadinus (Coleoptera: Carabidae) Conservation Genetics Resources. 1: 455-458. DOI: 10.1007/s12686-009-9105-9  0.92
2008 Orlando L, Calvignac S, Schnebelen C, Douady CJ, Godfrey LR, Hänni C. DNA from extinct giant lemurs links archaeolemurids to extant indriids. Bmc Evolutionary Biology. 8: 121. PMID 18442367 DOI: 10.1186/1471-2148-8-121  0.92
2008 Scalliet G, Piola F, Douady CJ, Réty S, Raymond O, Baudino S, Bordji K, Bendahmane M, Dumas C, Cock JM, Hugueney P. Scent evolution in Chinese roses. Proceedings of the National Academy of Sciences of the United States of America. 105: 5927-32. PMID 18413608 DOI: 10.1073/pnas.0711551105  0.92
2008 Foulquier A, Malard F, Lefébure T, Douady CJ, Gibert J. The imprint of Quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae) Journal of Biogeography. 35: 552-564. DOI: 10.1111/j.1365-2699.2007.01795.x  0.92
2007 Orlando L, Hänni C, Douady CJ. Mammoth and elephant phylogenetic relationships: Mammut americanum, the missing outgroup. Evolutionary Bioinformatics Online. 3: 45-51. PMID 19430604  0.92
2007 Lefébure T, Douady CJ, Malard F, Gibert J. Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis). Molecular Phylogenetics and Evolution. 42: 676-86. PMID 17049283 DOI: 10.1016/j.ympev.2006.08.020  0.92
2007 Springer MS, Murphy WJ, Eizirik E, Madsen O, Scally M, Douady CJ, Teeling EC, Stanhope MJ, De Jong WW, O'Brien SJ. A molecular classification for the living orders of placental mammals and the phylogenetic placement of primates Primate Origins: Adaptations and Evolution. 1-28. DOI: 10.1007/978-0-387-33507-0_1  0.92
2007 Douady CJ. Contribution of molecular techniques to the species delimitation problem | Apports des approches moléculaires à la délimitation d'espèces Bulletin De La Societe Zoologique De France. 132: 281-291.  0.92
2006 Orlando L, Mashkour M, Burke A, Douady CJ, Eisenmann V, Hänni C. Geographic distribution of an extinct equid (Equus hydruntinus: Mammalia, Equidae) revealed by morphological and genetical analyses of fossils. Molecular Ecology. 15: 2083-93. PMID 16780426 DOI: 10.1111/j.1365-294X.2006.02922.x  0.92
2006 Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J. Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology. 15: 1797-806. PMID 16689899 DOI: 10.1111/j.1365-294X.2006.02888.x  0.92
2006 Lefébure T, Douady CJ, Gouy M, Gibert J. Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution. 40: 435-47. PMID 16647275 DOI: 10.1016/j.ympev.2006.03.014  0.92
2006 Hughes S, Hayden TJ, Douady CJ, Tougard C, Germonpré M, Stuart A, Lbova L, Carden RF, Hänni C, Say L. Molecular phylogeny of the extinct giant deer, Megaloceros giganteus. Molecular Phylogenetics and Evolution. 40: 285-91. PMID 16556506 DOI: 10.1016/j.ympev.2006.02.004  0.92
2006 Clay O, Carels N, Douady CJ, Bernardi G. Density gradient ultracentrifugation and whole genome sequences: Fine-tuning the correspondence Progress in Colloid and Polymer Science. 131: 97-107. DOI: 10.1007/2882_009  0.92
2005 Nieberding C, Libois R, Douady CJ, Morand S, Michaux JR. Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: persistence of northern cryptic populations during ice ages? Molecular Ecology. 14: 765-79. PMID 15723668 DOI: 10.1111/j.1365-294X.2005.02440.x  0.92
2005 Wirshing HH, Messing CG, Douady CJ, Reed J, Stanhope MJ, Shivji MS. Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa: Octocorallia) Marine Biology. 147: 497-508. DOI: 10.1007/s00227-005-1592-y  0.92
2004 Boucher Y, Douady CJ, Sharma AK, Kamekura M, Doolittle WF. Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. Journal of Bacteriology. 186: 3980-90. PMID 15175312 DOI: 10.1128/JB.186.12.3980-3990.2004  0.92
2004 Springer MS, Scally M, Madsen O, de Jong WW, Douady CJ, Stanhope MJ. The use of composite taxa in supermatrices. Molecular Phylogenetics and Evolution. 30: 883-4. PMID 15012970 DOI: 10.1016/j.ympev.2003.09.019  0.92
2004 Douady CJ, Scally M, Springer MS, Stanhope MJ. "Lipotyphlan" phylogeny based on the growth hormone receptor gene: a reanalysis. Molecular Phylogenetics and Evolution. 30: 778-88. PMID 15012955 DOI: 10.1016/S1055-7903(03)00246-X  0.92
2003 Papke RT, Douady CJ, Doolittle WF, Rodríguez-Valera F. Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern. Environmental Microbiology. 5: 1039-45. PMID 14641583 DOI: 10.1046/j.1462-2920.2003.00501.x  0.92
2003 Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau ME, Nesbø CL, Case RJ, Doolittle WF. Lateral gene transfer and the origins of prokaryotic groups. Annual Review of Genetics. 37: 283-328. PMID 14616063 DOI: 10.1146/annurev.genet.37.050503.084247  0.92
2003 Philippe H, Douady CJ. Horizontal gene transfer and phylogenetics. Current Opinion in Microbiology. 6: 498-505. PMID 14572543 DOI: 10.1016/j.mib.2003.09.008  0.92
2003 Douady CJ, Douzery EJ. Molecular estimation of eulipotyphlan divergence times and the evolution of "Insectivora". Molecular Phylogenetics and Evolution. 28: 285-96. PMID 12878465 DOI: 10.1016/S1055-7903(03)00119-2  0.92
2003 Douady CJ, Catzeflis F, Raman J, Springer MS, Stanhope MJ. The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews). Proceedings of the National Academy of Sciences of the United States of America. 100: 8325-30. PMID 12821774 DOI: 10.1073/pnas.0832467100  0.92
2003 Clay O, Douady CJ, Carels N, Hughes S, Bucciarelli G, Bernardi G. Using analytical ultracentrifugation to study compositional variation in vertebrate genomes. European Biophysics Journal : Ebj. 32: 418-26. PMID 12684711 DOI: 10.1007/s00249-003-0294-y  0.92
2003 Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJ. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution. 20: 248-54. PMID 12598692 DOI: 10.1093/molbev/msg042  0.92
2003 Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 39-57; discussion 57. PMID 12594917 DOI: 10.1098/rstb.2002.1185  0.92
2003 Asher RJ, Douady CJ, Catzeflis F, Springer MS, Stanhope MJ. Phylogenetics of the Tenrecidae (mammalia): A response to Douady et al., 2002 Molecular Phylogenetics and Evolution. 26: 328-332. PMID 12565040 DOI: 10.1016/S1055-7903(02)00336-6  0.92
2003 Douady CJ, Dosay M, Shivji MS, Stanhope MJ. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution. 26: 215-21. PMID 12565032 DOI: 10.1016/S1055-7903(02)00333-0  0.92
2003 Chapman DD, Abercrombie DL, Douady CJ, Pikitch EK, Stanhope MJ, Shivji MS. A streamlined, bi-organelle, multiplex PCR approach to species identification: Application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias Conservation Genetics. 4: 415-425. DOI: 10.1023/A:1024771215616  0.92
2002 Douady CJ, Chatelier PI, Madsen O, de Jong WW, Catzeflis F, Springer MS, Stanhope MJ. Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews. Molecular Phylogenetics and Evolution. 25: 200-9. PMID 12383761 DOI: 10.1016/S1055-7903(02)00232-4  0.92
2002 Douady CJ, Catzeflis F, Kao DJ, Springer MS, Stanhope MJ. Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs. Molecular Phylogenetics and Evolution. 22: 357-63. PMID 11884160 DOI: 10.1006/mpev.2001.1055  0.92
2001 Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science (New York, N.Y.). 294: 2348-51. PMID 11743200 DOI: 10.1126/science.1067179  0.92
2001 Clay O, Carels N, Douady C, Macaya G, Bernardi G. Compositional heterogeneity within and among isochores in mammalian genomes. I. CsCl and sequence analyses. Gene. 276: 15-24. PMID 11591467 DOI: 10.1016/S0378-1119(01)00667-9  0.92
2001 Brown JR, Douady CJ, Italia MJ, Marshall WE, Stanhope MJ. Universal trees based on large combined protein sequence data sets. Nature Genetics. 28: 281-5. PMID 11431701 DOI: 10.1038/90129  0.92
2001 Madsen O, Scally M, Douady CJ, Kao DJ, DeBry RW, Adkins R, Amrine HM, Stanhope MJ, de Jong WW, Springer MS. Parallel adaptive radiations in two major clades of placental mammals. Nature. 409: 610-4. PMID 11214318 DOI: 10.1038/35054544  0.92
2001 Springer MS, DeBry RW, Douady C, Amrine HM, Madsen O, de Jong WW, Stanhope MJ. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Molecular Biology and Evolution. 18: 132-43. PMID 11158372 DOI: 10.1093/oxfordjournals.molbev.a003787  0.92
2000 Douady C, Carels N, Clay O, Catzeflis F, Bernardi G. Diversity and phylogenetic implications of CsCl profiles from rodent DNAs Molecular Phylogenetics and Evolution. 17: 219-230. PMID 11083936 DOI: 10.1006/mpev.2000.0838  0.92
1999 Lavergne A, Douady C, Catzeflis FM. Isolation and characterization of microsatellite loci in Didelphis marsupialis (Marsupialia: Didelphidae) Molecular Ecology. 8: 517-518.  0.92
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