| Year |
Citation |
Score |
| 2024 |
Zehr JD, Kosakovsky Pond SL, Shank SD, McQueary H, Grenier JK, Whittaker GR, Stanhope MJ, Goodman LB. Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the subgenus. Microbiology Spectrum. e0086724. PMID 39373506 DOI: 10.1128/spectrum.00867-24 |
0.371 |
|
| 2024 |
Ceres K, Zehr JD, Murrell C, Millet JK, Sun Q, McQueary HC, Horton A, Cazer C, Sams K, Reboul G, Andreopoulos WB, Mitchell PK, Anderson R, Franklin-Guild R, Cronk BD, ... ... Stanhope MJ, et al. Evolutionary genomic analyses of canine infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials. Applied and Environmental Microbiology. e0035424. PMID 39012166 DOI: 10.1128/aem.00354-24 |
0.331 |
|
| 2023 |
Olarte-Castillo XA, Plimpton L, McQueary H, Sun Y, Yu YT, Cover S, Richardson AN, Jin Y, Grenier JK, Cummings KJ, Bunting E, Diuk-Wasser M, Needle D, Schuler K, Stanhope MJ, et al. Detection and characterization of novel luchacoviruses, genus , in saliva and feces of meso-carnivores in the northeastern United States. Journal of Virology. e0082923. PMID 37882520 DOI: 10.1128/jvi.00829-23 |
0.351 |
|
| 2023 |
Olarte-Castillo XA, Plimpton L, McQueary H, Sun Y, Yu YT, Cover S, Richardson AN, Jin Y, Grenier JK, Cummings KJ, Bunting E, Diuk-Wasser M, Needle D, Schuler K, Stanhope MJ, et al. Detection and characterization of novel luchacoviruses, genus , shed in saliva and feces of meso-carnivores in the northeastern United States. Biorxiv : the Preprint Server For Biology. PMID 37745528 DOI: 10.1101/2023.05.31.541188 |
0.346 |
|
| 2022 |
Stanhope MJ, Ceres KM, Sun Q, Wang M, Zehr JD, Marra NJ, Wilder AP, Zou C, Bernard AM, Pavinski-Bitar P, Lokey MG, Shivji MS. Genomes of endangered great hammerhead and shortfin mako sharks reveal historic population declines and high levels of inbreeding in great hammerhead. Iscience. 26: 105815. PMID 36632067 DOI: 10.1016/j.isci.2022.105815 |
0.651 |
|
| 2022 |
de Klerk A, Swanepoel P, Lourens R, Zondo M, Abodunran I, Lytras S, MacLean OA, Robertson D, Kosakovsky Pond SL, Zehr JD, Kumar V, Stanhope MJ, Harkins G, Murrell B, Martin DP. Conserved recombination patterns across coronavirus subgenera. Virus Evolution. 8: veac054. PMID 35814334 DOI: 10.1093/ve/veac054 |
0.376 |
|
| 2021 |
Bernard AM, Finnegan KA, Pavinski Bitar P, Stanhope MJ, Shivji MS. Genomic assessment of global population structure in a highly migratory and habitat versatile apex predator, the tiger shark (Galeocerdo cuvier). The Journal of Heredity. PMID 34374783 DOI: 10.1093/jhered/esab046 |
0.587 |
|
| 2021 |
Richards VP, Nigsch A, Pavinski Bitar P, Sun Q, Stuber T, Ceres K, Smith RL, Robbe Austerman S, Schukken Y, Grohn YT, Stanhope MJ. Evolutionary genomic and bacteria GWAS analysis of subsp. and dairy cattle Johne's disease phenotypes. Applied and Environmental Microbiology. PMID 33547057 DOI: 10.1128/AEM.02570-20 |
0.633 |
|
| 2019 |
Gorman J, Marra N, Shivji MS, Stanhope MJ. The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, . Mitochondrial Dna. Part B, Resources. 4: 3642-3643. PMID 33366122 DOI: 10.1080/23802359.2019.1677524 |
0.665 |
|
| 2019 |
Richards VP, Velsko IM, Alam T, Zadoks RN, Manning SD, Pavinski Bitar PD, Hasler HB, Crestani C, Springer G, Probert B, Town CD, Stanhope MJ. Population gene introgression and high genome plasticity for the zoonotic pathogen Streptococcus agalactiae. Molecular Biology and Evolution. PMID 31350563 DOI: 10.1093/Molbev/Msz169 |
0.726 |
|
| 2019 |
Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, et al. White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability. Proceedings of the National Academy of Sciences of the United States of America. PMID 30782839 DOI: 10.1073/Pnas.1819778116 |
0.788 |
|
| 2019 |
Gorman J, Marra N, Shivji MS, Stanhope MJ. The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, Isurus oxyrinchus Mitochondrial Dna Part B. 4: 3642-3643. DOI: 10.1080/23802359.2019.1677524 |
0.654 |
|
| 2018 |
Bernard AM, Richards VP, Stanhope MJ, Shivji MS. Transcriptome derived microsatellites demonstrate strong genetic differentiation in Pacific white sharks. The Journal of Heredity. PMID 30204894 DOI: 10.1093/Jhered/Esy045 |
0.761 |
|
| 2017 |
Ruck CL, Marra N, Shivji MS, Stanhope MJ. The complete mitochondrial genome of the endangered great hammerhead shark, . Mitochondrial Dna. Part B, Resources. 2: 246-248. PMID 33473787 DOI: 10.1080/23802359.2017.1318682 |
0.686 |
|
| 2017 |
Marra NJ, Richards VP, Early A, Bogdanowicz SM, Pavinski Bitar PD, Stanhope MJ, Shivji MS. Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy. Bmc Genomics. 18: 87. PMID 28132643 DOI: 10.1186/S12864-016-3411-X |
0.756 |
|
| 2017 |
Ruck CL, Marra N, Shivji MS, Stanhope MJ. The complete mitochondrial genome of the endangered great hammerhead shark, Sphyrna mokarran Mitochondrial Dna Part B. 2: 246-248. DOI: 10.1080/23802359.2017.1318682 |
0.717 |
|
| 2016 |
Marra NJ, Wang M, Sun Q, Pavinski Bitar PD, Stanhope MJ, Shivji MS. Mitochondrial genome of an Atlantic white shark (). Mitochondrial Dna. Part B, Resources. 1: 717-719. PMID 33473604 DOI: 10.1080/23802359.2016.1222248 |
0.653 |
|
| 2016 |
Jacob AS, Andersen LO, Pavinski Bitar P, Richards VP, Shah S, Stanhope MJ, Stensvold CR, Clark CG. Blastocystis mitochondrial genomes appear to show multiple independent gains and losses of start and stop codons. Genome Biology and Evolution. PMID 27811175 DOI: 10.1093/Gbe/Evw255 |
0.707 |
|
| 2016 |
Lutz HL, Marra NJ, Grewe F, Carlson JS, Palinauskas V, Valkiūnas G, Stanhope MJ. Laser capture microdissection microscopy and genome sequencing of the avian malaria parasite, Plasmodium relictum. Parasitology Research. PMID 27651044 DOI: 10.1007/S00436-016-5237-5 |
0.425 |
|
| 2016 |
Lutz HL, Patterson BD, Kerbis Peterhans JC, Stanley WT, Webala PW, Gnoske TP, Hackett SJ, Stanhope MJ. Diverse sampling of East African haemosporidians reveals chiropteran origin of malaria parasites in primates and rodents. Molecular Phylogenetics and Evolution. PMID 26975691 DOI: 10.1016/J.Ympev.2016.03.004 |
0.315 |
|
| 2016 |
Huguet-Tapia JC, Lefebure T, Badger JH, Guan D, Pettis GS, Stanhope MJ, Loria R. Genome content and phylogenomics reveal both ancestral and lateral evolutionary pathways in plant pathogenic Streptomyces species. Applied and Environmental Microbiology. PMID 26826232 DOI: 10.1128/Aem.03504-15 |
0.851 |
|
| 2016 |
Marra NJ, Wang M, Sun Q, Pavinski Bitar PD, Stanhope MJ, Shivji MS. Mitochondrial genome of an Atlantic white shark (Carcharodon carcharias) Mitochondrial Dna Part B. 1: 717-719. DOI: 10.1080/23802359.2016.1222248 |
0.665 |
|
| 2015 |
Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ. Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. Plos One. 10: e0119799. PMID 25807497 DOI: 10.1371/Journal.Pone.0119799 |
0.819 |
|
| 2015 |
Kaspar J, Ahn SJ, Palmer SR, Choi SC, Stanhope MJ, Burne RA. A unique open reading frame within the comX gene of Streptococcus mutans regulates genetic competence and oxidative stress tolerance. Molecular Microbiology. 96: 463-82. PMID 25620525 DOI: 10.1111/Mmi.12948 |
0.347 |
|
| 2014 |
Dogan B, Suzuki H, Herlekar D, Sartor RB, Campbell BJ, Roberts CL, Stewart K, Scherl EJ, Araz Y, Bitar PP, Lefébure T, Chandler B, Schukken YH, Stanhope MJ, Simpson KW. Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation. Inflammatory Bowel Diseases. 20: 1919-32. PMID 25230163 DOI: 10.1097/Mib.0000000000000183 |
0.766 |
|
| 2014 |
Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ. Phylogenomics and the dynamic genome evolution of the genus Streptococcus. Genome Biology and Evolution. 6: 741-53. PMID 24625962 DOI: 10.1093/Gbe/Evu048 |
0.726 |
|
| 2014 |
Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Corrigendum to "Comparative characterization of the virulence gene clusters (lipooligosacharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species" [Inf. Gen. Evol. 14 (2013) 200-213] Infection, Genetics and Evolution. 21: 506-507. DOI: 10.1016/J.Meegid.2013.12.001 |
0.799 |
|
| 2013 |
Richards VP, Choi SC, Pavinski Bitar PD, Gurjar AA, Stanhope MJ. Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment. Bmc Genomics. 14: 920. PMID 24369756 DOI: 10.1186/1471-2164-14-920 |
0.721 |
|
| 2013 |
Richards VP, Suzuki H, Stanhope MJ, Shivji MS. Characterization of the heart transcriptome of the white shark (Carcharodon carcharias). Bmc Genomics. 14: 697. PMID 24112713 DOI: 10.1186/1471-2164-14-697 |
0.777 |
|
| 2013 |
Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans. Plos One. 8: e61358. PMID 23613838 DOI: 10.1371/Journal.Pone.0061358 |
0.835 |
|
| 2013 |
Kim JN, Stanhope MJ, Burne RA. Core-gene-encoded peptide regulating virulence-associated traits in Streptococcus mutans. Journal of Bacteriology. 195: 2912-20. PMID 23603743 DOI: 10.1128/Jb.00189-13 |
0.389 |
|
| 2013 |
Zeng L, Choi SC, Danko CG, Siepel A, Stanhope MJ, Burne RA. Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans. Plos One. 8: e60465. PMID 23555977 DOI: 10.1371/Journal.Pone.0060465 |
0.346 |
|
| 2013 |
Lin C, den Bakker HC, Suzuki H, Lefébure T, Ponnala L, Sun Q, Stanhope MJ, Wiedmann M, Duhamel GE. Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.). Genome Announcements. 1. PMID 23469345 DOI: 10.1128/Genomea.00215-12 |
0.817 |
|
| 2013 |
Zeng L, Xue P, Stanhope MJ, Burne RA. A galactose-specific sugar: phosphotransferase permease is prevalent in the non-core genome of Streptococcus mutans. Molecular Oral Microbiology. 28: 292-301. PMID 23421335 DOI: 10.1111/Omi.12025 |
0.402 |
|
| 2013 |
Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 14: 200-13. PMID 23279811 DOI: 10.1016/J.Meegid.2012.12.010 |
0.81 |
|
| 2013 |
Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ. Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Molecular Biology and Evolution. 30: 881-93. PMID 23228887 DOI: 10.1093/Molbev/Mss278 |
0.847 |
|
| 2013 |
Bell JA, Jerome JP, Plovanich-Jones AE, Smith EJ, Gettings JR, Kim HY, Landgraf JR, Lefébure T, Kopper JJ, Rathinam VA, St Charles JL, Buffa BA, Brooks AP, Poe SA, Eaton KA, ... Stanhope MJ, et al. Outcome of infection of C57BL/6 IL-10(-/-) mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo. Microbial Pathogenesis. 54: 1-19. PMID 22960579 DOI: 10.1016/J.Micpath.2012.08.001 |
0.399 |
|
| 2013 |
Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Correction: Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans Plos One. 8. DOI: 10.1371/Annotation/Ffff8Cd5-B8Fa-4D3C-A993-E5169198F1E6 |
0.803 |
|
| 2012 |
Richards VP, Zadoks RN, Pavinski Bitar PD, Lefébure T, Lang P, Werner B, Tikofsky L, Moroni P, Stanhope MJ. Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. Bmc Microbiology. 12: 293. PMID 23244770 DOI: 10.1186/1471-2180-12-293 |
0.837 |
|
| 2012 |
Burne RA, Zeng L, Ahn SJ, Palmer SR, Liu Y, Lefebure T, Stanhope MJ, Nascimento MM. Progress dissecting the oral microbiome in caries and health. Advances in Dental Research. 24: 77-80. PMID 22899685 DOI: 10.1177/0022034512449462 |
0.784 |
|
| 2012 |
Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ. Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. Plos One. 7: e37607. PMID 22666370 DOI: 10.1371/Journal.Pone.0037607 |
0.83 |
|
| 2012 |
Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A. Replacing and additive horizontal gene transfer in Streptococcus. Molecular Biology and Evolution. 29: 3309-20. PMID 22617954 DOI: 10.1093/Molbev/Mss138 |
0.495 |
|
| 2012 |
Suzuki H, Lefébure T, Bitar PP, Stanhope MJ. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. Bmc Genomics. 13: 38. PMID 22272658 DOI: 10.1186/1471-2164-13-38 |
0.839 |
|
| 2012 |
Suzuki H, Stanhope MJ. Functional bias of positively selected genes in Streptococcus genomes. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 274-7. PMID 22155358 DOI: 10.1016/J.Meegid.2011.11.004 |
0.417 |
|
| 2012 |
Richards VP, Stanhope MJ, Shivji MS. Island endemism, morphological stasis, and possible cryptic speciation in two coral reef, commensal Leucothoid amphipod species throughout Florida and the Caribbean Biodiversity and Conservation. 21: 343-361. DOI: 10.1007/S10531-011-0186-X |
0.768 |
|
| 2011 |
Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ. Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1263-75. PMID 21536150 DOI: 10.1016/J.Meegid.2011.04.019 |
0.838 |
|
| 2011 |
Suzuki H, Lefébure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ. Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. Genome Biology and Evolution. 3: 168-85. PMID 21282711 DOI: 10.1093/Gbe/Evr006 |
0.857 |
|
| 2011 |
Simpson K, Dogan B, Bitar PP, Schukken Y, Stanhope M. Comparative genomics of adherent-invasive Escherichia coli (AIEC) associated with Crohn's disease. O-003. Inflammatory Bowel Diseases. 17: S1-S1. DOI: 10.1093/Ibd/17.Supplement1.S1A |
0.359 |
|
| 2011 |
Dogan B, Suzuki H, Herlekar D, Araz Y, Bitar PD, Sartor RB, Schukken YH, Scherl EJ, Stanhope M, Simpson KW. Comparative Genomics of Crohn's Associated Adherent-Invasive Escherichia coli (AIEC) Reveals Association of AIEC Pathotype With PDU and lpfA, Which Influence Pathogenic Behavior of Bacteria in Cultured Cells Gastroenterology. 140: S-29. DOI: 10.1016/S0016-5085(11)60111-X |
0.385 |
|
| 2010 |
Lefébure T, Bitar PD, Suzuki H, Stanhope MJ. Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept. Genome Biology and Evolution. 2: 646-55. PMID 20688752 DOI: 10.1093/Gbe/Evq048 |
0.844 |
|
| 2010 |
Lang P, Lefebure T, Wang W, Pavinski Bitar P, Meinersmann RJ, Kaya K, Stanhope MJ. Expanded multilocus sequence typing and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts. Applied and Environmental Microbiology. 76: 1913-25. PMID 20097815 DOI: 10.1128/Aem.01753-09 |
0.848 |
|
| 2009 |
Lefébure T, Stanhope MJ. Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter. Genome Research. 19: 1224-32. PMID 19304960 DOI: 10.1101/Gr.089250.108 |
0.844 |
|
| 2009 |
Lang P, Lefébure T, Wang W, Zadoks RN, Schukken Y, Stanhope MJ. Gene content differences across strains of Streptococcus uberis identified using oligonucleotide microarray comparative genomic hybridization. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 179-88. PMID 19056519 DOI: 10.1016/J.Meegid.2008.10.015 |
0.846 |
|
| 2009 |
Shivji MS, Pank M, Natanson LJ, Kohler NE, Stanhope MJ. Case Study: Rapid Species Identification of Pelagic Shark Tissues Using Genetic Approaches Sharks of the Open Ocean: Biology, Fisheries and Conservation. 334-338. DOI: 10.1002/9781444302516.ch29 |
0.562 |
|
| 2008 |
Stanhope MJ, Lefébure T, Walsh SL, Becker JA, Lang P, Pavinski Bitar PD, Miller LA, Italia MJ, Amrine-Madsen H. Positive selection in penicillin-binding proteins 1a, 2b, and 2x from Streptococcus pneumoniae and its correlation with amoxicillin resistance development. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 331-9. PMID 18394970 DOI: 10.1016/J.Meegid.2008.02.001 |
0.779 |
|
| 2007 |
Stanhope MJ, Walsh SL, Becker JA, Miller LA, Lefébure T, Lang P, Bitar PD, Amrine-Madsen H. The relative frequency of intraspecific lateral gene transfer of penicillin binding proteins 1a, 2b, and 2x, in amoxicillin resistant Streptococcus pneumoniae. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 520-34. PMID 17475572 DOI: 10.1016/J.Meegid.2007.03.004 |
0.803 |
|
| 2007 |
Lefébure T, Stanhope MJ. Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biology. 8: R71. PMID 17475002 DOI: 10.1186/Gb-2007-8-5-R71 |
0.837 |
|
| 2007 |
Richards VP, Thomas JD, Stanhope MJ, Shivji MS. Genetic connectivity in the Florida reef system: comparative phylogeography of commensal invertebrates with contrasting reproductive strategies. Molecular Ecology. 16: 139-57. PMID 17181727 DOI: 10.1111/J.1365-294X.2006.03145.X |
0.751 |
|
| 2007 |
Springer MS, Murphy WJ, Eizirik E, Madsen O, Scally M, Douady CJ, Teeling EC, Stanhope MJ, De Jong WW, O'Brien SJ. A molecular classification for the living orders of placental mammals and the phylogenetic placement of primates Primate Origins: Adaptations and Evolution. 1-28. DOI: 10.1007/978-0-387-33507-0_1 |
0.593 |
|
| 2006 |
Burk-Herrick A, Scally M, Amrine-Madsen H, Stanhope MJ, Springer MS. Natural selection and mammalian BRCA1 sequences: elucidating functionally important sites relevant to breast cancer susceptibility in humans. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 257-70. PMID 16518693 DOI: 10.1007/S00335-005-0067-2 |
0.37 |
|
| 2005 |
Stanhope MJ, Walsh SL, Becker JA, Italia MJ, Ingraham KA, Gwynn MN, Mathie T, Poupard JA, Miller LA, Brown JR, Amrine-Madsen H. Molecular evolution perspectives on intraspecific lateral DNA transfer of topoisomerase and gyrase loci in Streptococcus pneumoniae, with implications for fluoroquinolone resistance development and spread. Antimicrobial Agents and Chemotherapy. 49: 4315-26. PMID 16189113 DOI: 10.1128/Aac.49.10.4315-4326.2005 |
0.435 |
|
| 2005 |
Nishihara H, Satta Y, Nikaido M, Thewissen JG, Stanhope MJ, Okada N. A retroposon analysis of Afrotherian phylogeny. Molecular Biology and Evolution. 22: 1823-33. PMID 15930154 DOI: 10.1093/Molbev/Msi179 |
0.462 |
|
| 2005 |
Tagliaro CH, Schneider H, Sampaio I, Cruz Schneider MP, Vallinoto M, Stanhope M. Molecular phylogeny of the genus Saguinus (Platyrrhini, Primates) based on the ND1 mitochondrial gene and implications for conservation Genetics and Molecular Biology. 28: 46-53. DOI: 10.1590/S1415-47572005000100009 |
0.447 |
|
| 2005 |
Wirshing HH, Messing CG, Douady CJ, Reed J, Stanhope MJ, Shivji MS. Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa: Octocorallia) Marine Biology. 147: 497-508. DOI: 10.1007/S00227-005-1592-Y |
0.762 |
|
| 2004 |
Springer MS, Stanhope MJ, Madsen O, de Jong WW. Molecules consolidate the placental mammal tree. Trends in Ecology & Evolution. 19: 430-8. PMID 16701301 DOI: 10.1016/J.Tree.2004.05.006 |
0.407 |
|
| 2004 |
Stanhope MJ, Brown JR, Amrine-Madsen H. Evidence from the evolutionary analysis of nucleotide sequences for a recombinant history of SARS-CoV. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 4: 15-9. PMID 15019585 DOI: 10.1016/J.Meegid.2003.10.001 |
0.421 |
|
| 2004 |
Springer MS, Scally M, Madsen O, de Jong WW, Douady CJ, Stanhope MJ. The use of composite taxa in supermatrices. Molecular Phylogenetics and Evolution. 30: 883-4. PMID 15012970 DOI: 10.1016/J.Ympev.2003.09.019 |
0.583 |
|
| 2004 |
Douady CJ, Scally M, Springer MS, Stanhope MJ. "Lipotyphlan" phylogeny based on the growth hormone receptor gene: a reanalysis. Molecular Phylogenetics and Evolution. 30: 778-88. PMID 15012955 DOI: 10.1016/S1055-7903(03)00246-X |
0.67 |
|
| 2003 |
Douzery EJ, Delsuc F, Stanhope MJ, Huchon D. Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations. Journal of Molecular Evolution. 57: S201-13. PMID 15008417 DOI: 10.1007/S00239-003-0028-X |
0.366 |
|
| 2003 |
Delsuc F, Stanhope MJ, Douzery EJ. Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution. 28: 261-75. PMID 12878463 DOI: 10.1016/S1055-7903(03)00111-8 |
0.443 |
|
| 2003 |
Amrine-Madsen H, Scally M, Westerman M, Stanhope MJ, Krajewski C, Springer MS. Nuclear gene sequences provide evidence for the monophyly of australidelphian marsupials. Molecular Phylogenetics and Evolution. 28: 186-96. PMID 12878458 DOI: 10.1016/S1055-7903(03)00122-2 |
0.422 |
|
| 2003 |
Douady CJ, Catzeflis F, Raman J, Springer MS, Stanhope MJ. The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews). Proceedings of the National Academy of Sciences of the United States of America. 100: 8325-30. PMID 12821774 DOI: 10.1073/Pnas.0832467100 |
0.681 |
|
| 2003 |
Brown JR, Gentry D, Becker JA, Ingraham K, Holmes DJ, Stanhope MJ. Horizontal transfer of drug-resistant aminoacyl-transfer-RNA synthetases of anthrax and Gram-positive pathogens. Embo Reports. 4: 692-8. PMID 12792655 DOI: 10.1038/Sj.Embor.Embor881 |
0.394 |
|
| 2003 |
Gentry DR, Ingraham KA, Stanhope MJ, Rittenhouse S, Jarvest RL, O'Hanlon PJ, Brown JR, Holmes DJ. Variable sensitivity to bacterial methionyl-tRNA synthetase inhibitors reveals subpopulations of Streptococcus pneumoniae with two distinct methionyl-tRNA synthetase genes. Antimicrobial Agents and Chemotherapy. 47: 1784-9. PMID 12760849 DOI: 10.1128/Aac.47.6.1784-1789.2003 |
0.429 |
|
| 2003 |
Asher RJ, Douady CJ, Catzeflis F, Springer MS, Stanhope MJ. Phylogenetics of the Tenrecidae (mammalia): A response to Douady et al., 2002 Molecular Phylogenetics and Evolution. 26: 328-332. PMID 12565040 DOI: 10.1016/S1055-7903(02)00336-6 |
0.539 |
|
| 2003 |
Douady CJ, Dosay M, Shivji MS, Stanhope MJ. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution. 26: 215-21. PMID 12565032 DOI: 10.1016/S1055-7903(02)00333-0 |
0.772 |
|
| 2003 |
Hayden HS, Blomster J, Maggs CA, Silva PC, Stanhope MJ, Waaland JR. Linnaeus was right all along: Ulva and Enteromorpha are not distinct genera European Journal of Phycology. 38: 277-294. DOI: 10.1080/1364253031000136321 |
0.426 |
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| 2003 |
Chapman DD, Abercrombie DL, Douady CJ, Pikitch EK, Stanhope MJ, Shivji MS. A streamlined, bi-organelle, multiplex PCR approach to species identification: Application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias Conservation Genetics. 4: 415-425. DOI: 10.1023/A:1024771215616 |
0.757 |
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| 2003 |
Douady CJ, Catzeflis F, Springer MS, Stanhope MJ. Molecular evidence for the monophyly of Tenrecidae: a reply to Asher Molecular Phylogenetics and Evolution. 26: 331-332. DOI: 10.1016/S1055-7903(02)00337-8 |
0.594 |
|
| 2002 |
Blomster J, Bäck S, Fewer DP, Kiirikki M, Lehvo A, Maggs CA, Stanhope MJ. Novel morphology in Enteromorpha (Ulvophyceae) forming green tides. American Journal of Botany. 89: 1756-63. PMID 21665602 DOI: 10.3732/Ajb.89.11.1756 |
0.412 |
|
| 2002 |
Douady CJ, Chatelier PI, Madsen O, de Jong WW, Catzeflis F, Springer MS, Stanhope MJ. Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews. Molecular Phylogenetics and Evolution. 25: 200-9. PMID 12383761 DOI: 10.1016/S1055-7903(02)00232-4 |
0.699 |
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| 2002 |
Delsuc F, Scally M, Madsen O, Stanhope MJ, de Jong WW, Catzeflis FM, Springer MS, Douzery EJ. Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Molecular Biology and Evolution. 19: 1656-71. PMID 12270893 DOI: 10.1093/Oxfordjournals.Molbev.A003989 |
0.409 |
|
| 2002 |
Poupard J, Brown J, Gagnon R, Stanhope MJ, Stewart C. Methods for data mining from large multinational surveillance studies. Antimicrobial Agents and Chemotherapy. 46: 2409-19. PMID 12121912 DOI: 10.1128/Aac.46.8.2409-2419.2002 |
0.352 |
|
| 2002 |
McIvor L, Maggs CA, Stanhope MJ. RbcL sequences indicate a single evolutionary origin of multinucleate cells in the red algal tribe Callithamnieae. Molecular Phylogenetics and Evolution. 23: 433-46. PMID 12099797 DOI: 10.1016/S1055-7903(02)00041-6 |
0.391 |
|
| 2002 |
Huchon D, Madsen O, Sibbald MJ, Ament K, Stanhope MJ, Catzeflis F, de Jong WW, Douzery EJ. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Molecular Biology and Evolution. 19: 1053-65. PMID 12082125 DOI: 10.1093/Oxfordjournals.Molbev.A004164 |
0.413 |
|
| 2002 |
Douady CJ, Catzeflis F, Kao DJ, Springer MS, Stanhope MJ. Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs. Molecular Phylogenetics and Evolution. 22: 357-63. PMID 11884160 DOI: 10.1006/Mpev.2001.1055 |
0.718 |
|
| 2002 |
Teeling EC, Madsen O, Van den Bussche RA, de Jong WW, Stanhope MJ, Springer MS. Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats. Proceedings of the National Academy of Sciences of the United States of America. 99: 1431-6. PMID 11805285 DOI: 10.1073/Pnas.022477199 |
0.344 |
|
| 2002 |
Maggs CA, Ward BA, McIvor LM, Evans CM, Rueness J, Stanhope MJ. Molecular analyses elucidate the taxonomy of fully corticated, nonspiny species of Ceramium (Ceramiaceae, Rhodophyta) in the British Isles Phycologia. 41: 409-420. DOI: 10.2216/I0031-8884-41-4-409.1 |
0.342 |
|
| 2002 |
Shivji M, Clarke S, Pank M, Natanson L, Kohler N, Stanhope M. Genetic identification of pelagic shark body parts for conservation and trade monitoring Conservation Biology. 16: 1036-1047. DOI: 10.1046/J.1523-1739.2002.01188.X |
0.642 |
|
| 2001 |
Pank M, Stanhope M, Natanson L, Kohler N, Shivji M. Rapid and simultaneous identification of body parts from the morphologically similar sharks Carcharhinus obscurus and Carcharhinus plumbeus (Carcharhinidae) using multiplex PCR. Marine Biotechnology (New York, N.Y.). 3: 231-40. PMID 14961360 DOI: 10.1007/S101260000071 |
0.63 |
|
| 2001 |
Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science (New York, N.Y.). 294: 2348-51. PMID 11743200 DOI: 10.1126/Science.1067179 |
0.659 |
|
| 2001 |
Delsuc F, Catzeflis FM, Stanhope MJ, Douzery EJ. The evolution of armadillos, anteaters and sloths depicted by nuclear and mitochondrial phylogenies: implications for the status of the enigmatic fossil Eurotamandua. Proceedings. Biological Sciences / the Royal Society. 268: 1605-15. PMID 11487408 DOI: 10.1098/Rspb.2001.1702 |
0.442 |
|
| 2001 |
Brown JR, Douady CJ, Italia MJ, Marshall WE, Stanhope MJ. Universal trees based on large combined protein sequence data sets. Nature Genetics. 28: 281-5. PMID 11431701 DOI: 10.1038/90129 |
0.665 |
|
| 2001 |
Stanhope MJ, Lupas A, Italia MJ, Koretke KK, Volker C, Brown JR. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 411: 940-4. PMID 11418856 DOI: 10.1038/35082058 |
0.534 |
|
| 2001 |
Springer MS, Teeling EC, Madsen O, Stanhope MJ, de Jong WW. Integrated fossil and molecular data reconstruct bat echolocation. Proceedings of the National Academy of Sciences of the United States of America. 98: 6241-6. PMID 11353869 DOI: 10.1073/Pnas.111551998 |
0.421 |
|
| 2001 |
McIvor L, Maggs CA, Provan J, Stanhope MJ. rbcL sequences reveal multiple cryptic introductions of the Japanese red alga Polysiphonia harveyi. Molecular Ecology. 10: 911-9. PMID 11348500 DOI: 10.1046/J.1365-294X.2001.01240.X |
0.425 |
|
| 2001 |
Madsen O, Scally M, Douady CJ, Kao DJ, DeBry RW, Adkins R, Amrine HM, Stanhope MJ, de Jong WW, Springer MS. Parallel adaptive radiations in two major clades of placental mammals. Nature. 409: 610-4. PMID 11214318 DOI: 10.1038/35054544 |
0.674 |
|
| 2001 |
Springer MS, DeBry RW, Douady C, Amrine HM, Madsen O, de Jong WW, Stanhope MJ. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Molecular Biology and Evolution. 18: 132-43. PMID 11158372 DOI: 10.1093/Oxfordjournals.Molbev.A003787 |
0.691 |
|
| 2001 |
Chalker AF, Minehart HW, Hughes NJ, Koretke KK, Lonetto MA, Brinkman KK, Warren PV, Lupas A, Stanhope MJ, Brown JR, Hoffman PS. Systematic identification of selective essential genes in Helicobacter pylori by genome prioritization and allelic replacement mutagenesis. Journal of Bacteriology. 183: 1259-68. PMID 11157938 DOI: 10.1128/Jb.183.4.1259-1268.2001 |
0.373 |
|
| 2001 |
van Dijk MA, Madsen O, Catzeflis F, Stanhope MJ, de Jong WW, Pagel M. Protein sequence signatures support the African clade of mammals. Proceedings of the National Academy of Sciences of the United States of America. 98: 188-93. PMID 11114173 DOI: 10.1073/Pnas.250216797 |
0.422 |
|
| 2001 |
Dijk MAMv, Madsen O, Catzeflis F, Stanhope MJ, Jong WWd, Pagel M. From the Cover: Protein sequence signatures support the African clade of mammals Proceedings of the National Academy of Sciences of the United States of America. 98: 188. DOI: 10.1073/Pnas.98.1.188 |
0.444 |
|
| 2001 |
Scally M, Madsen O, Douady CJ, de Jong WW, Stanhope MJ, Springer MS. Journal of Mammalian Evolution. 8: 239-277. DOI: 10.1023/A:1014446915393 |
0.67 |
|
| 2000 |
Cassens I, Vicario S, Waddell VG, Balchowsky H, Van Belle D, Ding W, Fan C, Mohan RS, Simões-Lopes PC, Bastida R, Meyer A, Stanhope MJ, Milinkovitch MC. Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages. Proceedings of the National Academy of Sciences of the United States of America. 97: 11343-7. PMID 11027333 DOI: 10.1073/pnas.97.21.11343 |
0.345 |
|
| 2000 |
Waddell VG, Milinkovitch MC, Bérubé M, Stanhope MJ. Molecular phylogenetic examination of the delphinoidea trichotomy: congruent evidence from three nuclear loci indicates that porpoises (Phocoenidae) share a more recent common ancestry with white whales (Monodontidae) than they do with true dolphins (Delphinidae). Molecular Phylogenetics and Evolution. 15: 314-8. PMID 10837160 DOI: 10.1006/Mpev.1999.0751 |
0.464 |
|
| 2000 |
Blomster J, Hoey EM, Maggs CA, Stanhope MJ. Species-specific oligonucleotide probes for macroalgae: molecular discrimination of two marine fouling species of Enteromorpha (Ulvophyceae). Molecular Ecology. 9: 177-86. PMID 10672161 DOI: 10.1046/J.1365-294X.2000.00850.X |
0.385 |
|
| 2000 |
Teeling EC, Scally M, Kao DJ, Romagnoli ML, Springer MS, Stanhope MJ. Molecular evidence regarding the origin of echolocation and flight in bats. Nature. 403: 188-92. PMID 10646602 DOI: 10.1038/35003188 |
0.408 |
|
| 2000 |
Tagliaro CH, Schneider MPC, Schneider H, Sampaio I, Stanhope M. Molecular studies of Callithrix pygmaea (Primates, Platyrrhini) based on transferrin intronic and ND1 regions: Implications for taxonomy and conservation Genetics and Molecular Biology. 23: 729-737. DOI: 10.1590/S1415-47572000000400006 |
0.317 |
|
| 1999 |
Springer MS, Amrine HM, Burk A, Stanhope MJ. Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition. Systematic Biology. 48: 65-75. PMID 12078646 DOI: 10.1080/106351599260445 |
0.413 |
|
| 1999 |
Gatesy J, Milinkovitch M, Waddell V, Stanhope M. Stability of cladistic relationships between Cetacea and higher-level artiodactyl taxa Systematic Biology. 48: 9-20. PMID 12078645 DOI: 10.1080/106351599260409 |
0.344 |
|
| 1999 |
Tan IH, Blomster J, Hansen G, Leskinen E, Maggs CA, Mann DG, Sluiman HJ, Stanhope MJ. Molecular phylogenetic evidence for a reversible morphogenetic switch controlling the gross morphology of two common genera of green seaweeds, Ulva and Enteromorpha. Molecular Biology and Evolution. 16: 1011-8. PMID 10474897 DOI: 10.1093/Oxfordjournals.Molbev.A026190 |
0.438 |
|
| 1999 |
Blomster J, Maggs CA, Stanhope MJ. Extensive intraspecific morphological variation in Enteromorpha muscoides (Chlorophyta) revealed by molecular analysis Journal of Phycology. 35: 575-586. DOI: 10.1046/J.1529-8817.1999.3530575.X |
0.373 |
|
| 1998 |
Stanhope MJ, Waddell VG, Madsen O, de Jong W, Hedges SB, Cleven GC, Kao D, Springer MS. Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. Proceedings of the National Academy of Sciences of the United States of America. 95: 9967-72. PMID 9707584 DOI: 10.1073/Pnas.95.17.9967 |
0.409 |
|
| 1998 |
Stanhope MJ, Madsen O, Waddell VG, Cleven GC, de Jong WW, Springer MS. Highly congruent molecular support for a diverse superordinal clade of endemic African mammals. Molecular Phylogenetics and Evolution. 9: 501-8. PMID 9667998 DOI: 10.1006/Mpev.1998.0517 |
0.408 |
|
| 1998 |
Blomster J, Maggs CA, Stanhope MJ. Molecular and morphological analysis of Enteromorpha intestinalis and E. compressa (Chlorophyta) in the British Isles Journal of Phycology. 34: 319-340. DOI: 10.1046/J.1529-8817.1998.340319.X |
0.422 |
|
| 1997 |
Springer MS, Burk A, Kavanagh JR, Waddell VG, Stanhope MJ. The interphotoreceptor retinoid binding protein gene in therian mammals: implications for higher level relationships and evidence for loss of function in the marsupial mole. Proceedings of the National Academy of Sciences of the United States of America. 94: 13754-9. PMID 9391099 DOI: 10.1073/Pnas.94.25.13754 |
0.414 |
|
| 1997 |
Springer MS, Cleven GC, Madsen O, de Jong WW, Waddell VG, Amrine HM, Stanhope MJ. Endemic African mammals shake the phylogenetic tree. Nature. 388: 61-4. PMID 9214502 DOI: 10.1038/40386 |
0.457 |
|
| 1997 |
Tagliaro CH, Schneider MP, Schneider H, Sampaio IC, Stanhope MJ. Marmoset phylogenetics, conservation perspectives, and evolution of the mtDNA control region. Molecular Biology and Evolution. 14: 674-84. PMID 9190069 DOI: 10.1093/Oxfordjournals.Molbev.A025807 |
0.4 |
|
| 1996 |
Smith MR, Shivji MS, Waddell VG, Stanhope MJ. Phylogenetic evidence from the IRBP gene for the paraphyly of toothed whales, with mixed support for Cetacea as a suborder of Artiodactyla. Molecular Biology and Evolution. 13: 918-22. PMID 8752000 DOI: 10.1093/Oxfordjournals.Molbev.A025659 |
0.694 |
|
| 1996 |
Porter CA, Goodman M, Stanhope MJ. Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene. Molecular Phylogenetics and Evolution. 5: 89-101. PMID 8673300 DOI: 10.1006/Mpev.1996.0008 |
0.468 |
|
| 1996 |
Stanhope MJ, Smith MR, Waddell VG, Porter CA, Shivji MS, Goodman M. Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: convincing evidence for several superordinal clades. Journal of Molecular Evolution. 43: 83-92. PMID 8660440 DOI: 10.1007/Bf02337352 |
0.673 |
|
| 1994 |
Goodman M, Bailey WJ, Hayasaka K, Stanhope MJ, Slightom J, Czelusniak J. Molecular evidence on primate phylogeny from DNA sequences. American Journal of Physical Anthropology. 94: 3-24. PMID 8042704 DOI: 10.1002/Ajpa.1330940103 |
0.386 |
|
| 1993 |
Stanhope MJ, Tagle DA, Shivji MS, Hattori M, Sakaki Y, Slightom JL, Goodman M. Multiple L1 progenitors in prosimian primates: phylogenetic evidence from ORF1 sequences. Journal of Molecular Evolution. 37: 179-89. PMID 8411207 DOI: 10.1007/Bf02407354 |
0.641 |
|
| 1993 |
Schneider H, Schneider MP, Sampaio I, Harada ML, Stanhope M, Czelusniak J, Goodman M. Molecular phylogeny of the New World monkeys (Platyrrhini, primates). Molecular Phylogenetics and Evolution. 2: 225-42. PMID 8136923 DOI: 10.1006/Mpev.1993.1022 |
0.373 |
|
| 1993 |
STANHOPE MJ, HARTWICK B, BAILLIE D. Molecular phylogeographic evidence for multiple shifts in habitat preference in the diversification of an amphipod species Molecular Ecology. 2: 99-112. DOI: 10.1111/J.1365-294X.1993.Tb00004.X |
0.357 |
|
| 1992 |
Stanhope MJ, Connelly MM, Hartwick B. Evolution of a crustacean chemical communication channel: Behavioral and ecological genetic evidence for a habitat-modified, race-specific pheromone. Journal of Chemical Ecology. 18: 1871-87. PMID 24254727 DOI: 10.1007/Bf02751110 |
0.378 |
|
| 1992 |
Tagle DA, Stanhope MJ, Siemieniak DR, Benson P, Goodman M, Slightom JL. The beta globin gene cluster of the prosimian primate Galago crassicaudatus: nucleotide sequence determination of the 41-kb cluster and comparative sequence analyses. Genomics. 13: 741-60. PMID 1639402 DOI: 10.1016/0888-7543(92)90150-Q |
0.389 |
|
| 1992 |
Stanhope MJ, Czelusniak J, Si JS, Nickerson J, Goodman M. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Molecular Phylogenetics and Evolution. 1: 148-60. PMID 1342928 DOI: 10.1016/1055-7903(92)90026-D |
0.451 |
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