Ilya Ruvinsky, Ph.D. - Publications

Affiliations: 
Ecology & Evolution University of Chicago, Chicago, IL 
Website:
http://pondside.uchicago.edu/ecol-evol/people/ruvinsky.html

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Gouvêa DY, Aprison EZ, Ruvinsky I. Experience Modulates the Reproductive Response to Heat Stress in C. elegans via Multiple Physiological Processes. Plos One. 10: e0145925. PMID 26713620 DOI: 10.1371/journal.pone.0145925  1
2015 Aprison EZ, Ruvinsky I. Sex Pheromones of C. elegans Males Prime the Female Reproductive System and Ameliorate the Effects of Heat Stress. Plos Genetics. 11: e1005729. PMID 26645097 DOI: 10.1371/journal.pgen.1005729  1
2015 Gordon KL, Arthur RK, Ruvinsky I. Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence. Plos Genetics. 11: e1005268. PMID 26020930 DOI: 10.1371/journal.pgen.1005268  1
2014 Aprison EZ, Ruvinsky I. Balanced trade-offs between alternative strategies shape the response of C. elegans reproduction to chronic heat stress. Plos One. 9: e105513. PMID 25165831 DOI: 10.1371/journal.pone.0105513  1
2014 Barrière A, Ruvinsky I. Pervasive divergence of transcriptional gene regulation in Caenorhabditis nematodes. Plos Genetics. 10: e1004435. PMID 24968346 DOI: 10.1371/journal.pgen.1004435  1
2012 Barrière A, Gordon KL, Ruvinsky I. Coevolution within and between regulatory loci can preserve promoter function despite evolutionary rate acceleration. Plos Genetics. 8: e1002961. PMID 23028368 DOI: 10.1371/journal.pgen.1002961  1
2012 Romero IG, Ruvinsky I, Gilad Y. Comparative studies of gene expression and the evolution of gene regulation. Nature Reviews. Genetics. 13: 505-16. PMID 22705669 DOI: 10.1038/nrg3229  1
2012 Wang PP, Ruvinsky I. Family size and turnover rates among several classes of small non-protein-coding RNA genes in Caenorhabditis nematodes. Genome Biology and Evolution. 4: 565-74. PMID 22467905 DOI: 10.1093/gbe/evs034  1
2012 Gordon KL, Ruvinsky I. Tempo and mode in evolution of transcriptional regulation. Plos Genetics. 8: e1002432. PMID 22291600 DOI: 10.1371/journal.pgen.1002432  1
2012 McMullen PD, Aprison EZ, Winter PB, Amaral LA, Morimoto RI, Ruvinsky I. Macro-level modeling of the response of C. elegans reproduction to chronic heat stress. Plos Computational Biology. 8: e1002338. PMID 22291584 DOI: 10.1371/journal.pcbi.1002338  1
2011 Arthur RK, Ruvinsky I. Evidence that purifying selection acts on promoter sequences. Genetics. 189: 1121-6. PMID 21900262 DOI: 10.1534/genetics.111.133637  1
2011 He Z, Eichel K, Ruvinsky I. Functional conservation of cis-regulatory elements of heat-shock genes over long evolutionary distances. Plos One. 6: e22677. PMID 21799932 DOI: 10.1371/journal.pone.0022677  1
2011 Barrière A, Gordon KL, Ruvinsky I. Distinct functional constraints partition sequence conservation in a cis-regulatory element. Plos Genetics. 7: e1002095. PMID 21655084 DOI: 10.1371/journal.pgen.1002095  1
2010 Wang PP, Ruvinsky I. Computational prediction of Caenorhabditis box H/ACA snoRNAs using genomic properties of their host genes. Rna (New York, N.Y.). 16: 290-8. PMID 20038629 DOI: 10.1261/rna.1876210  1
2008 Horton AC, Mahadevan NR, Minguillon C, Osoegawa K, Rokhsar DS, Ruvinsky I, de Jong PJ, Logan MP, Gibson-Brown JJ. Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs. Development Genes and Evolution. 218: 613-28. PMID 18815807 DOI: 10.1007/s00427-008-0249-5  1
2007 Ruvinsky I, Ohler U, Burge CB, Ruvkun G. Detection of broadly expressed neuronal genes in C. elegans. Developmental Biology. 302: 617-26. PMID 17046742 DOI: 10.1016/j.ydbio.2006.09.014  1
2003 Horton AC, Mahadevan NR, Ruvinsky I, Gibson-Brown JJ. Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 299: 41-53. PMID 14508816 DOI: 10.1002/jez.b.40  1
2003 Piotrowski T, Ahn DG, Schilling TF, Nair S, Ruvinsky I, Geisler R, Rauch GJ, Haffter P, Zon LI, Zhou Y, Foott H, Dawid IB, Ho RK. The zebrafish van gogh mutation disrupts tbx1, which is involved in the DiGeorge deletion syndrome in humans. Development (Cambridge, England). 130: 5043-52. PMID 12952905 DOI: 10.1242/dev.00704  1
2003 Ruvinsky I, Ruvkun G. Functional tests of enhancer conservation between distantly related species. Development (Cambridge, England). 130: 5133-42. PMID 12944426 DOI: 10.1242/dev.00711  1
2002 Ruvinsky I, Chertkov O, Borue XV, Agulnik SI, Gibson-Brown JJ, Lyle SR, Silver LM. Genetics analysis of mouse mutations Abnormal feet and tail and rough coat, which cause developmental abnormalities and alopecia. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 13: 675-9. PMID 12514744 DOI: 10.1007/s00335-002-2191-6  1
2000 Ruvinsky I, Gibson-Brown JJ. Genetic and developmental bases of serial homology in vertebrate limb evolution. Development (Cambridge, England). 127: 5233-44. PMID 11076746  1
2000 Ruvinsky I, Silver LM, Gibson-Brown JJ. Phylogenetic analysis of T-Box genes demonstrates the importance of amphioxus for understanding evolution of the vertebrate genome. Genetics. 156: 1249-57. PMID 11063699  1
2000 Ahn DG, Ruvinsky I, Oates AC, Silver LM, Ho RK. tbx20, a new vertebrate T-box gene expressed in the cranial motor neurons and developing cardiovascular structures in zebrafish. Mechanisms of Development. 95: 253-8. PMID 10906473 DOI: 10.1016/S0925-4773(00)00346-4  1
2000 Yelon D, Ticho B, Halpern ME, Ruvinsky I, Ho RK, Silver LM, Stainier DY. The bHLH transcription factor hand2 plays parallel roles in zebrafish heart and pectoral fin development. Development (Cambridge, England). 127: 2573-82. PMID 10821756  1
2000 Ruvinsky I, Oates AC, Silver LM, Ho RK. The evolution of paired appendages in vertebrates: T-box genes in the zebrafish. Development Genes and Evolution. 210: 82-91. PMID 10664151  1
1998 Ruvinsky I, Silver LM, Ho RK. Characterization of the zebrafish tbx16 gene and evolution of the vertebrate T-box family. Development Genes and Evolution. 208: 94-9. PMID 9569350 DOI: 10.1007/s004270050158  1
1997 Agulnik SI, Ruvinsky I, Silver LM. Three novel T-box genes in Caenorhabditis elegans. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 40: 458-64. PMID 9276934  1
1997 Ruvinsky I, Silver LM. Newly identified paralogous groups on mouse chromosomes 5 and 11 reveal the age of a T-box cluster duplication. Genomics. 40: 262-6. PMID 9119393 DOI: 10.1006/geno.1996.4591  1
1996 Agulnik SI, Garvey N, Hancock S, Ruvinsky I, Chapman DL, Agulnik I, Bollag R, Papaioannou V, Silver LM. Evolution of mouse T-box genes by tandem duplication and cluster dispersion. Genetics. 144: 249-54. PMID 8878690  1
1996 Ruvinsky I, Maxson LR. Phylogenetic relationships among bufonoid frogs (Anura:Neobatrachia) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. 5: 533-47. PMID 8744766 DOI: 10.1006/mpev.1996.0048  1
1995 Hay JM, Ruvinsky I, Hedges SB, Maxson LR. Phylogenetic relationships of amphibian families inferred from DNA sequences of mitochondrial 12S and 16S ribosomal RNA genes. Molecular Biology and Evolution. 12: 928-37. PMID 7476139  1
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