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Cheng-Ruei Lee - Publications

Affiliations: 
2013 Duke University, Durham, NC 
 2016- National Taiwan University, Taipei, Taipei City, Taiwan 
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lin YP, Lu CY, Lee CR. The Past Contribution and Future Fate of Genetic Variants under Climate Change in an Island Population of . The American Naturalist. 202: 558-570. PMID 37792919 DOI: 10.1086/726015  0.318
2023 Chien PS, Chen PH, Lee CR, Chiou TJ. TWAS coupled with eQTL analysis reveals the genetic connection between gene expression and flowering time in Arabidopsis. Journal of Experimental Botany. PMID 37419660 DOI: 10.1093/jxb/erad262  0.349
2023 Lin YP, Chen HW, Yeh PM, Anand SS, Lin J, Li J, Noble T, Nair R, Schafleitner R, Samsonova M, Bishop-von-Wettberg E, Nuzhdin S, Ting CT, Lawn RJ, Lee CR. Demographic history and distinct selection signatures of two domestication genes in mungbean. Plant Physiology. PMID 37335936 DOI: 10.1093/plphys/kiad356  0.688
2023 Ong PW, Lin YP, Chen HW, Lo CY, Burlyaeva M, Noble T, Nair RM, Schafleitner R, Vishnyakova M, Bishop-von-Wettberg E, Samsonova MG, Nuzhdin S, Ting CT, Lee CR. Environment as a limiting factor of the historical global spread of mungbean. Elife. 12. PMID 37204293 DOI: 10.7554/eLife.85725  0.577
2023 Li J, Lee CR. The role of gene presence-absence variations on genetic incompatibility in Asian rice. The New Phytologist. PMID 37194454 DOI: 10.1111/nph.18969  0.315
2021 Carley LN, Mojica JP, Wang B, Chen CY, Lin YP, Prasad KVSK, Chan E, Hsu CW, Keith R, Nuñez CL, Olson-Manning CF, Rushworth CA, Wagner MR, Wang J, Yeh PM, ... ... Lee CR, et al. Ecological factors influence balancing selection on leaf chemical profiles of a wildflower. Nature Ecology & Evolution. PMID 34140651 DOI: 10.1038/s41559-021-01486-0  0.758
2021 Lin YP, Mitchell-Olds T, Lee CR. The ecological, genetic and genomic architecture of local adaptation and population differentiation in . Proceedings. Biological Sciences. 288: 20202472. PMID 33878927 DOI: 10.1098/rspb.2020.2472  0.674
2020 Sokolkova A, Burlyaeva M, Valiannikova T, Vishnyakova M, Schafleitner R, Lee CR, Ting CT, Nair RM, Nuzhdin S, Samsonova M, von Wettberg E. Genome-wide association study in accessions of the mini-core collection of mungbean (Vigna radiata) from the World Vegetable Gene Bank (Taiwan). Bmc Plant Biology. 20: 363. PMID 33050907 DOI: 10.1186/s12870-020-02579-x  0.573
2020 Kozlov K, Sokolkova A, Lee CR, Ting CT, Schafleitner R, Bishop-von Wettberg E, Nuzhdin S, Samsonova M. Dynamical climatic model for time to flowering in Vigna radiata. Bmc Plant Biology. 20: 202. PMID 33050872 DOI: 10.1186/s12870-020-02408-1  0.474
2020 Matsumura H, Hsiao MC, Lin YP, Toyoda A, Taniai N, Tarora K, Urasaki N, Anand SS, Dhillon NPS, Schafleitner R, Lee CR. Long-read bitter gourd () genome and the genomic architecture of nonclassic domestication. Proceedings of the National Academy of Sciences of the United States of America. PMID 32461376 DOI: 10.1073/Pnas.1921016117  0.57
2020 Lin YP, Lu CY, Lee CR. The climatic association of population divergence and future extinction risk of . Aob Plants. 12: plaa012. PMID 32257092 DOI: 10.1093/Aobpla/Plaa012  0.411
2019 Demmings EM, Williams BR, Lee CR, Barba P, Yang S, Hwang CF, Reisch BI, Chitwood DH, Londo JP. Quantitative Trait Locus Analysis of Leaf Morphology Indicates Conserved Shape Loci in Grapevine. Frontiers in Plant Science. 10: 1373. PMID 31803199 DOI: 10.3389/Fpls.2019.01373  0.455
2019 Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T. Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta. Genome Biology. 20: 161. PMID 31399118 DOI: 10.1186/s13059-019-1781-5  0.779
2019 Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T. Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta. Genome Biology. 20: 126. PMID 31227026 DOI: 10.1186/S13059-019-1729-9  0.812
2019 Hsu CW, Lo CY, Lee CR. On the post-glacial spread of human commensal Arabidopsis thaliana: journey to the east. The New Phytologist. PMID 30636325 DOI: 10.1111/Nph.15682  0.515
2019 Burlyaeva M, Vishnyakova M, Gurkina M, Kozlov K, Lee C, Ting C, Schafleitner R, Nuzhdin S, Samsonova M, von Wettberg E. Collections of Mungbean [Vigna radiata) (L.) R. Wilczek] and urdbean [V. mungo (L.) Hepper] in Vavilov Institute (VIR): traits diversity and trends in the breeding process over the last 100 years Genetic Resources and Crop Evolution. 66: 767-781. DOI: 10.1007/S10722-019-00760-2  0.621
2018 Lee CR, Hsieh JW, Schranz ME, Mitchell-Olds T. The Functional Change and Deletion of Homologs Contribute to the Evolution of Rapid Flowering in . Frontiers in Plant Science. 9: 1078. PMID 30108602 DOI: 10.3389/Fpls.2018.01078  0.627
2018 Vaidya P, McDurmon A, Mattoon E, Keefe M, Carley L, Lee CR, Bingham R, Anderson JT. Ecological causes and consequences of flower color polymorphism in a self-pollinating plant (Boechera stricta). The New Phytologist. PMID 29369384 DOI: 10.1111/Nph.14998  0.615
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, et al. Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 1585. PMID 29185503 DOI: 10.1038/S41559-017-0310-8  0.748
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/S41559-017-0119  0.796
2017 Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nature Communications. 8: 14458. PMID 28181519 DOI: 10.1038/Ncomms14458  0.628
2017 Lee C, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, et al. Erratum: Young inversion with multiple linked QTLs under selection in a hybrid zone Nature Ecology & Evolution. 1. DOI: 10.1038/s41559-017-0166  0.793
2016 Leamy LJ, Lee CR, Song Q, Mujacic I, Luo Y, Chen CY, Li C, Kjemtrup S, Song BH. Environmental versus geographical effects on genomic variation in wild soybean (Glycine soja) across its native range in northeast Asia. Ecology and Evolution. 6: 6332-6344. PMID 27648247 DOI: 10.1002/Ece3.2351  0.664
2016 Yao N, Lee CR, Semagn K, Sow M, Nwilene F, Kolade O, Bocco R, Oyetunji O, Mitchell-Olds T, Ndjiondjop MN. QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance. Plos One. 11: e0160749. PMID 27508500 DOI: 10.1371/Journal.Pone.0160749  0.638
2016 Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Hoda A, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27436134 DOI: 10.1111/Tpj.13262  0.796
2016 Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044  0.662
2016 Kim JG, Kim JH, Song BJ, Lee CW, Lee YS, Im JS. Empirical approach to determine molecular weight distribution using MALDI-TOF analysis of petroleum-based heavy oil Fuel. 186: 20-23. DOI: 10.1016/j.fuel.2016.08.052  0.453
2015 Dixit S, Grondin A, Lee CR, Henry A, Olds TM, Kumar A. Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci. Bmc Genetics. 16: 86. PMID 26243626 DOI: 10.1186/S12863-015-0249-1  0.487
2014 Leamy LJ, Lee CR, Cousins V, Mujacic I, Manzaneda AJ, Prasad K, Mitchell-Olds T, Song BH. Large-scale adaptive divergence in Boechera fecunda, an endangered wild relative of Arabidopsis. Ecology and Evolution. 4: 3175-86. PMID 25473471 DOI: 10.1002/Ece3.1148  0.815
2014 Lee CR, Anderson JT, Mitchell-Olds T. Unifying genetic canalization, genetic constraint, and genotype-by-environment interaction: QTL by genomic background by environment interaction of flowering time in Boechera stricta. Plos Genetics. 10: e1004727. PMID 25340779 DOI: 10.1371/Journal.Pgen.1004727  0.766
2014 Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, et al. Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. The Plant Journal : For Cell and Molecular Biology. 79: 361-74. PMID 24888695 DOI: 10.1111/Tpj.12569  0.758
2014 Anderson JT, Lee CR, Mitchell-Olds T. Strong selection genome-wide enhances fitness trade-offs across environments and episodes of selection. Evolution; International Journal of Organic Evolution. 68: 16-31. PMID 24102539 DOI: 10.1111/Evo.12259  0.773
2013 Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, et al. 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proceedings of the National Academy of Sciences of the United States of America. 110: E1695-704. PMID 23580618 DOI: 10.1073/Pnas.1304354110  0.723
2013 Lee CR, Mitchell-Olds T. Complex trait divergence contributes to environmental niche differentiation in ecological speciation of Boechera stricta. Molecular Ecology. 22: 2204-17. PMID 23432437 DOI: 10.1111/Mec.12250  0.694
2013 Olson-Manning CF, Lee CR, Rausher MD, Mitchell-Olds T. Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana. Molecular Biology and Evolution. 30: 14-23. PMID 22923463 DOI: 10.1093/Molbev/Mss204  0.768
2013 Anderson JT, Lee CR, Rushworth CA, Colautti RI, Mitchell-Olds T. Genetic trade-offs and conditional neutrality contribute to local adaptation. Molecular Ecology. 22: 699-708. PMID 22420446 DOI: 10.1111/J.1365-294X.2012.05522.X  0.82
2012 Prasad KV, Song BH, Olson-Manning C, Anderson JT, Lee CR, Schranz ME, Windsor AJ, Clauss MJ, Manzaneda AJ, Naqvi I, Reichelt M, Gershenzon J, Rupasinghe SG, Schuler MA, Mitchell-Olds T. A gain-of-function polymorphism controlling complex traits and fitness in nature. Science (New York, N.Y.). 337: 1081-4. PMID 22936775 DOI: 10.1126/Science.1221636  0.746
2012 Lee CR, Mitchell-Olds T. Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome. Molecular Biology and Evolution. 29: 3721-8. PMID 22798389 DOI: 10.1093/Molbev/Mss174  0.699
2012 Colautti RI, Lee CR, Mitchell-Olds T. Origin, fate, and architecture of ecologically relevant genetic variation. Current Opinion in Plant Biology. 15: 199-204. PMID 22341792 DOI: 10.1016/J.Pbi.2012.01.016  0.838
2011 Rushworth CA, Song BH, Lee CR, Mitchell-Olds T. Boechera, a model system for ecological genomics. Molecular Ecology. 20: 4843-57. PMID 22059452 DOI: 10.1111/J.1365-294X.2011.05340.X  0.817
2011 Lee CR, Mitchell-Olds T. Quantifying effects of environmental and geographical factors on patterns of genetic differentiation. Molecular Ecology. 20: 4631-42. PMID 21999331 DOI: 10.1111/J.1365-294X.2011.05310.X  0.682
2011 Anderson JT, Lee CR, Mitchell-Olds T. Life-history QTLS and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis. Evolution; International Journal of Organic Evolution. 65: 771-87. PMID 21083662 DOI: 10.1111/J.1558-5646.2010.01175.X  0.738
2009 Fang S, Ting CT, Lee CR, Chu KH, Wang CC, Tsaur SC. Molecular evolution and functional diversification of fatty acid desaturases after recurrent gene duplication in Drosophila. Molecular Biology and Evolution. 26: 1447-56. PMID 19307313 DOI: 10.1093/Molbev/Msp057  0.615
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