Andrew Roger - Publications

Biochemistry & Molecular Biology Dalhousie University, Halifax, Nova Scotia, Canada 

165 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Baker BA, Gutiérrez-Preciado A, Rodríguez Del Río Á, McCarthy CGP, López-García P, Huerta-Cepas J, Susko E, Roger AJ, Eme L, Moreira D. Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments. Nature Microbiology. PMID 38519541 DOI: 10.1038/s41564-024-01647-4  0.714
2024 Eglit Y, Shiratori T, Jerlström-Hultqvist J, Williamson K, Roger AJ, Ishida KI, Simpson AGB. Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora. Current Biology : Cb. 34: 451-459.e6. PMID 38262350 DOI: 10.1016/j.cub.2023.12.032  0.826
2023 Gallot-Lavallée L, Jerlström-Hultqvist J, Zegarra-Vidarte P, Salas-Leiva DE, Stairs CW, Čepička I, Roger AJ, Archibald JM. Massive intein content in reveals aspects of intein mobility in eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2306381120. PMID 38019867 DOI: 10.1073/pnas.2306381120  0.786
2023 Záhonová K, Füssy Z, Stairs CW, Leger MM, Tachezy J, Čepička I, Roger AJ, Hampl V. Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans. Microbial Genomics. 9. PMID 37994879 DOI: 10.1099/mgen.0.001143  0.802
2023 Muñoz-Gómez SA, Cadena LR, Gardiner AT, Leger MM, Sheikh S, Connell LB, Bilý T, Kopejtka K, Beatty JT, Koblížek M, Roger AJ, Slamovits CH, Lukeš J, Hashimi H. Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60. Current Biology : Cb. 33: 1396. PMID 37040698 DOI: 10.1016/j.cub.2023.03.049  0.794
2023 Muñoz-Gómez SA, Cadena LR, Gardiner AT, Leger MM, Sheikh S, Connell LB, Bilý T, Kopejtka K, Beatty JT, Koblížek M, Roger AJ, Slamovits CH, Lukeš J, Hashimi H. Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60. Current Biology : Cb. PMID 36921606 DOI: 10.1016/j.cub.2023.02.059  0.814
2023 Higuera A, Salas-Leiva DE, Curtis B, Patiño LH, Zhao D, Jerlström-Hultqvist J, Dlutek M, Muñoz M, Roger AJ, Ramírez JD. Draft genomes of Blastocystis subtypes from human samples of Colombia. Parasites & Vectors. 16: 52. PMID 36732768 DOI: 10.1186/s13071-022-05619-7  0.728
2022 Hess S, Williams SK, Busch A, Irisarri I, Delwiche CF, de Vries S, Darienko T, Roger AJ, Archibald JM, Buschmann H, von Schwartzenberg K, de Vries J. A phylogenomically informed five-order system for the closest relatives of land plants. Current Biology : Cb. PMID 36055238 DOI: 10.1016/j.cub.2022.08.022  0.674
2022 Gerbracht JV, Harding T, Simpson AGB, Roger AJ, Hess S. Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. Current Biology : Cb. PMID 35700733 DOI: 10.1016/j.cub.2022.05.049  0.803
2022 Muñoz-Gómez SA, Susko E, Williamson K, Eme L, Slamovits CH, Moreira D, López-García P, Roger AJ. Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria. Nature Ecology & Evolution. 6: 253-262. PMID 35027725 DOI: 10.1038/s41559-021-01638-2  0.829
2021 Salas-Leiva DE, Tromer EC, Curtis BA, Jerlström-Hultqvist J, Kolisko M, Yi Z, Salas-Leiva JS, Gallot-Lavallée L, Williams SK, Kops GJPL, Archibald JM, Simpson AGB, Roger AJ. Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature Communications. 12: 7350. PMID 34916502 DOI: 10.1038/s41467-021-27605-w  0.789
2021 Stairs CW, Táborský P, Salomaki ED, Kolisko M, Pánek T, Eme L, Hradilová M, Vlček Č, Jerlström-Hultqvist J, Roger AJ, Čepička I. Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes. Current Biology : Cb. PMID 34710348 DOI: 10.1016/j.cub.2021.10.010  0.836
2021 Salas-Leiva DE, Tromer EC, Curtis BA, Jerlström-Hultqvist J, Kolisko M, Yi Z, Salas-Leiva JS, Gallot-Lavallée L, Williams SK, Kops GJPL, Archibald JM, Simpson AGB, Roger AJ. Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature Communications. 12: 6003. PMID 34650064 DOI: 10.1038/s41467-021-26077-2  0.811
2021 Pipaliya SV, Santos R, Salas-Leiva D, Balmer EA, Wirdnam CD, Roger AJ, Hehl AB, Faso C, Dacks JB. Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. Bmc Biology. 19: 167. PMID 34446013 DOI: 10.1186/s12915-021-01077-2  0.807
2021 Tice AK, Žihala D, Pánek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Eliáš M, Eme L, Roger AJ, Rokas A, Shen XX, Strassert JFH, Kolísko M, Brown MW. PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. Plos Biology. 19: e3001365. PMID 34358228 DOI: 10.1371/journal.pbio.3001365  0.814
2021 Zhang T, Li C, Zhang X, Wang C, Roger AJ, Gao F. Characterization and Comparative Analyses of Mitochondrial Genomes in Single-Celled Eukaryotes to Shed Light on the Diversity and Evolution of Linear Molecular Architecture. International Journal of Molecular Sciences. 22. PMID 33802618 DOI: 10.3390/ijms22052546  0.409
2021 Roger AJ, Susko E, Leger MM. Evolution: Reconstructing the Timeline of Eukaryogenesis. Current Biology : Cb. 31: R193-R196. PMID 33621507 DOI: 10.1016/j.cub.2020.12.035  0.803
2021 Žárský V, Klimeš V, Pačes J, Vlček Č, Hradilová M, Beneš V, Nývltová E, Hrdý I, Pyrih J, Mach J, Barlow L, Stairs CW, Eme L, Hall N, Eliáš M, ... ... Roger A, et al. The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba. Molecular Biology and Evolution. PMID 33528570 DOI: 10.1093/molbev/msab020  0.836
2020 Sibbald SJ, Eme L, Archibald JM, Roger AJ. Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes. Trends in Parasitology. PMID 32828660 DOI: 10.1016/J.Pt.2020.07.014  0.83
2020 Gray MW, Burger G, Derelle R, Klimeš V, Leger MM, Sarrasin M, Vlček Č, Roger AJ, Eliáš M, Lang BF. The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome. Bmc Biology. 18: 22. PMID 32122349 DOI: 10.1186/S12915-020-0741-6  0.833
2019 Burki F, Roger AJ, Brown MW, Simpson AGB. The New Tree of Eukaryotes. Trends in Ecology & Evolution. PMID 31606140 DOI: 10.1016/J.Tree.2019.08.008  0.667
2019 Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, ... Roger AJ, et al. The oxymonad genome displays canonical eukaryotic complexity in the absence of a mitochondrion. Molecular Biology and Evolution. PMID 31387118 DOI: 10.1093/Molbev/Msz147  0.815
2019 Hess S, Eme L, Roger AJ, Simpson AGB. A natural toroidal microswimmer with a rotary eukaryotic flagellum. Nature Microbiology. PMID 31182800 DOI: 10.1038/S41564-019-0478-6  0.696
2019 Muñoz-Gómez SA, Hess S, Burger G, Lang BF, Susko E, Slamovits CH, Roger AJ. An updated phylogeny of the reveals that the parasitic and have independent origins. Elife. 8. PMID 30789345 DOI: 10.7554/Elife.42535  0.827
2018 Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Maréchal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM. Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. Bmc Biology. 16: 137. PMID 30482201 DOI: 10.1186/S12915-018-0593-5  0.829
2018 Lax G, Eglit Y, Eme L, Bertrand EM, Roger AJ, Simpson AGB. Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes. Nature. PMID 30429611 DOI: 10.1038/S41586-018-0708-8  0.832
2018 Pyrihová E, Motycková A, Voleman L, Wandyszewska N, Fišer R, Seydlová G, Roger A, Kolísko M, Doležal P. A Single Tim Translocase In The Mitosomes Of Giardia Intestinalis Illustrates Convergence Of Protein Import Machines In Anaerobic Eukaryotes. Genome Biology and Evolution. PMID 30265292 DOI: 10.1093/Gbe/Evy215  0.806
2018 Heiss AA, Kolisko M, Ekelund F, Brown MW, Roger AJ, Simpson AGB. Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes. Royal Society Open Science. 5: 171707. PMID 29765641 DOI: 10.1098/Rsos.171707  0.822
2018 Stairs CW, Eme L, Muñoz-Gómez S, Cohen A, Dellaire G, Shepherd JN, Fawcett JP, Roger AJ. Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis. Elife. 7. PMID 29697049 DOI: 10.7554/Elife.34292  0.824
2018 Leger MM, Eme L, Stairs CW, Roger AJ. Demystifying Eukaryote Lateral Gene Transfer (Response to Martin 2017 DOI: 10.1002/bies.201700115). Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1700242. PMID 29543982 DOI: 10.1002/Bies.201700242  0.813
2018 Brown MW, Heiss AA, Kamikawa R, Inagaki Y, Yabuki A, Tice AK, Shiratori T, Ishida KI, Hashimoto T, Simpson AGB, Roger AJ. Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group. Genome Biology and Evolution. PMID 29360967 DOI: 10.1093/Gbe/Evy014  0.834
2017 Roger AJ, Muñoz-Gómez SA, Kamikawa R. The Origin and Diversification of Mitochondria. Current Biology : Cb. 27: R1177-R1192. PMID 29112874 DOI: 10.1016/j.cub.2017.09.015  0.787
2017 Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, ... ... Roger AJ, et al. Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. Plos Biology. 15: e2003769. PMID 28892507 DOI: 10.1371/Journal.Pbio.2003769  0.827
2017 Harding T, Roger AJ, Simpson AGB. Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers. Frontiers in Microbiology. 8: 944. PMID 28611746 DOI: 10.3389/Fmicb.2017.00944  0.801
2017 Kang S, Tice AK, Spiegel FW, Silberman JD, Pánek T, Cepicka I, Kostka M, Kosakyan A, Alcântara DM, Roger AJ, Shadwick LL, Smirnov A, Kudryavstev A, Lahr DJG, Brown MW. Between a pod and a hard test: the deep evolution of amoebae. Molecular Biology and Evolution. PMID 28505375 DOI: 10.1093/Molbev/Msx162  0.817
2017 Leger MM, Kolisko M, Kamikawa R, Stairs CW, Kume K, Čepička I, Silberman JD, Andersson JO, Xu F, Yabuki A, Eme L, Zhang Q, Takishita K, Inagaki Y, Simpson AGB, ... ... Roger AJ, et al. Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes. Nature Ecology & Evolution. 1: 0092. PMID 28474007 DOI: 10.1038/S41559-017-0092  0.799
2017 Yang J, Harding T, Kamikawa R, Simpson AGB, Roger AJ. Mitochondrial genome evolution and a novel RNA editing system in deep-branching heteroloboseids. Genome Biology and Evolution. PMID 28453770 DOI: 10.1093/gbe/evx086  0.822
2017 Eme L, Gentekaki E, Curtis B, Archibald JM, Roger AJ. Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut. Current Biology : Cb. PMID 28262486 DOI: 10.1016/J.Cub.2017.02.003  0.829
2017 Pánek T, Žihala D, Sokol M, Derelle R, Klimeš V, Hradilová M, Zadrobílková E, Susko E, Roger AJ, Čepička I, Eliáš M. Nuclear genetic codes with a different meaning of the UAG and the UAA codon. Bmc Biology. 15: 8. PMID 28193262 DOI: 10.1186/S12915-017-0353-Y  0.72
2017 Leger MM, Eme L, Hug LA, Roger AJ. Corrigendum Correction to "Novel hydrogenosomes in the microaerophilic jakobid Stygiella incarcerate". Molecular Biology and Evolution. PMID 28158607 DOI: 10.1093/Molbev/Msx059  0.756
2017 Muñoz-Gómez SA, Wideman JG, Roger AJ, Slamovits CH. The origin of mitochondrial cristae from alphaproteobacteria. Molecular Biology and Evolution. PMID 28087774 DOI: 10.1093/Molbev/Msw298  0.823
2016 Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AG, Keeling PJ, Roger AJ, Čepička I, Hampl V. Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. Bmc Evolutionary Biology. 16: 197. PMID 27716026 DOI: 10.1186/S12862-016-0771-4  0.794
2016 Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP. The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together. Journal of Cell Science. PMID 27672020 DOI: 10.1242/Jcs.178566  0.817
2016 Gawryluk RM, Kamikawa R, Stairs CW, Silberman JD, Brown MW, Roger AJ. The Earliest Stages of Mitochondrial Adaptation to Low Oxygen Revealed in a Novel Rhizarian. Current Biology : Cb. PMID 27666965 DOI: 10.1016/J.Cub.2016.08.025  0.814
2016 Xu F, Jerlström-Hultqvist J, Kolisko M, Simpson AG, Roger AJ, Svärd SG, Andersson JO. Erratum to: On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. Bmc Biology. 14: 77. PMID 27619515 DOI: 10.1186/s12915-016-0302-1  0.789
2016 Pyrih J, Pyrihová E, Kolísko M, Stojanovová D, Basu S, Harant K, Haindrich AC, Doležal P, Lukeš J, Roger A, Tachezy J. Minimal cytosolic iron-sulfur cluster assembly machinery of Giardia intestinalis is partially associated with mitosomes. Molecular Microbiology. PMID 27582265 DOI: 10.1111/Mmi.13487  0.783
2016 Muñoz-Gómez SA, Roger AJ. Leaving negative ancestors behind. Elife. 5. PMID 27580371 DOI: 10.7554/eLife.20061  0.691
2016 Xu F, Jerlström-Hultqvist J, Kolisko M, Simpson AG, Roger AJ, Svärd SG, Andersson JO. On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. Bmc Biology. 14: 62. PMID 27480115 DOI: 10.1186/S12915-016-0284-Z  0.815
2016 Harding T, Brown MW, Simpson AG, Roger AJ. Osmoadaptative strategy and its molecular signature in obligately halophilic heterotrophic protists. Genome Biology and Evolution. PMID 27412608 DOI: 10.1093/Gbe/Evw152  0.796
2016 Leger MM, Eme L, Hug LA, Roger AJ. Novel hydrogenosomes in the microaerophilic jakobid Stygiella incarcerata. Molecular Biology and Evolution. PMID 27280585 DOI: 10.1093/Molbev/Msw103  0.829
2016 Hamann E, Gruber-Vodicka H, Kleiner M, Tegetmeyer HE, Riedel D, Littmann S, Chen J, Milucka J, Viehweger B, Becker KW, Dong X, Stairs CW, Hinrichs KU, Brown MW, Roger AJ, et al. Environmental Breviatea harbour mutualistic Arcobacter epibionts. Nature. 534: 254-8. PMID 27279223 DOI: 10.1038/Nature18297  0.806
2016 Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, et al. A Eukaryote without a Mitochondrial Organelle. Current Biology : Cb. PMID 27185558 DOI: 10.1016/J.Cub.2016.03.053  0.84
2016 Kamikawa R, Shiratori T, Ishida K, Miyashita H, Roger AJ. Group II Intron-Mediated Trans-Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote, Diphylleia rotans. Genome Biology and Evolution. 8: 458-66. PMID 26833505 DOI: 10.1093/Gbe/Evw011  0.366
2016 Pánek T, Zadrobílková E, Walker G, Brown MW, Gentekaki E, Hroudová M, Kang S, Roger A, Tice AK, Vlček Č, Čepička I. First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group. Molecular Phylogenetics and Evolution. PMID 26826602 DOI: 10.1016/J.Ympev.2016.01.011  0.839
2015 Torruella G, de Mendoza A, Grau-Bové X, Antó M, Chaplin MA, Del Campo J, Eme L, Pérez-Cordón G, Whipps CM, Nichols KM, Paley R, Roger AJ, Sitjà-Bobadilla A, Donachie S, Ruiz-Trillo I. Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi. Current Biology : Cb. 25: 2404-10. PMID 26365255 DOI: 10.1016/J.Cub.2015.07.053  0.822
2015 Stairs CW, Leger MM, Roger AJ. Diversity and origins of anaerobic metabolism in mitochondria and related organelles. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140326. PMID 26323757 DOI: 10.1098/Rstb.2014.0326  0.812
2015 Gawryluk RM, Eme L, Roger AJ. Gene fusion, fission, lateral transfer, and loss: Not-so-rare events in the evolution of eukaryotic ATP citrate lyase. Molecular Phylogenetics and Evolution. 91: 12-6. PMID 26025427 DOI: 10.1016/J.Ympev.2015.05.010  0.833
2015 Leger MM, Petr? M, Žárský V, Eme L, Vl?ek ?, Harding T, Lang BF, Eliáš M, Doležal P, Roger AJ. An ancestral bacterial division system is widespread in eukaryotic mitochondria. Proceedings of the National Academy of Sciences of the United States of America. PMID 25831547 DOI: 10.1073/Pnas.1421392112  0.82
2015 Nývltová E, Stairs CW, Hrdý I, Rídl J, Mach J, Pačes J, Roger AJ, Tachezy J. Lateral gene transfer and gene duplication played a key role in the evolution of Mastigamoeba balamuthi hydrogenosomes. Molecular Biology and Evolution. 32: 1039-55. PMID 25573905 DOI: 10.1093/Molbev/Msu408  0.741
2014 Eme L, Sharpe SC, Brown MW, Roger AJ. On the age of eukaryotes: evaluating evidence from fossils and molecular clocks. Cold Spring Harbor Perspectives in Biology. 6. PMID 25085908 DOI: 10.1101/Cshperspect.A016139  0.809
2014 Klimeš V, Gentekaki E, Roger AJ, Eliáš M. A large number of nuclear genes in the human parasite blastocystis require mRNA polyadenylation to create functional termination codons. Genome Biology and Evolution. 6: 1956-61. PMID 25015079 DOI: 10.1093/Gbe/Evu146  0.695
2014 Tanifuji G, Onodera NT, Brown MW, Curtis BA, Roger AJ, Ka-Shu Wong G, Melkonian M, Archibald JM. Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae. Bmc Genomics. 15: 374. PMID 24885563 DOI: 10.1186/1471-2164-15-374  0.754
2014 Stairs CW, Eme L, Brown MW, Mutsaers C, Susko E, Dellaire G, Soanes DM, van der Giezen M, Roger AJ. A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Current Biology : Cb. 24: 1176-86. PMID 24856215 DOI: 10.1016/J.Cub.2014.04.033  0.806
2014 Gentekaki E, Kolisko M, Boscaro V, Bright KJ, Dini F, Di Giuseppe G, Gong Y, Miceli C, Modeo L, Molestina RE, Petroni G, Pucciarelli S, Roger AJ, Strom SL, Lynn DH. Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages. Molecular Phylogenetics and Evolution. 78: 36-42. PMID 24814356 DOI: 10.1016/J.Ympev.2014.04.020  0.829
2014 Kamikawa R, Kolisko M, Nishimura Y, Yabuki A, Brown MW, Ishikawa SA, Ishida K, Roger AJ, Hashimoto T, Inagaki Y. Gene content evolution in Discobid mitochondria deduced from the phylogenetic position and complete mitochondrial genome of Tsukubamonas globosa. Genome Biology and Evolution. 6: 306-15. PMID 24448982 DOI: 10.1093/Gbe/Evu015  0.832
2014 Tsaousis AD, Gentekaki E, Eme L, Gaston D, Roger AJ. Evolution of the cytosolic iron-sulfur cluster assembly machinery in Blastocystis species and other microbial eukaryotes. Eukaryotic Cell. 13: 143-53. PMID 24243793 DOI: 10.1128/Ec.00158-13  0.814
2013 Leger MM, Gawryluk RM, Gray MW, Roger AJ. Evidence for a hydrogenosomal-type anaerobic ATP generation pathway in Acanthamoeba castellanii. Plos One. 8: e69532. PMID 24086244 DOI: 10.1371/Journal.Pone.0069532  0.808
2013 Brown MW, Sharpe SC, Silberman JD, Heiss AA, Lang BF, Simpson AG, Roger AJ. Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads. Proceedings. Biological Sciences / the Royal Society. 280: 20131755. PMID 23986111 DOI: 10.1098/Rspb.2013.1755  0.833
2013 Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, ... ... Roger AJ, et al. The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications. 4: 2325. PMID 23942320 DOI: 10.1038/Ncomms3325  0.808
2013 Gaston D, Roger AJ. Functional divergence and convergent evolution in the plastid-targeted glyceraldehyde-3-phosphate dehydrogenases of diverse eukaryotic algae. Plos One. 8: e70396. PMID 23936198 DOI: 10.1371/Journal.Pone.0070396  0.721
2013 Kamikawa R, Brown MW, Nishimura Y, Sako Y, Heiss AA, Yubuki N, Gawryluk R, Simpson AG, Roger AJ, Hashimoto T, Inagaki Y. Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. Bmc Evolutionary Biology. 13: 131. PMID 23800323 DOI: 10.1186/1471-2148-13-131  0.784
2013 Harding T, Brown MW, Plotnikov A, Selivanova E, Park JS, Gunderson JH, Baumgartner M, Silberman JD, Roger AJ, Simpson AG. Amoeba stages in the deepest branching heteroloboseans, including Pharyngomonas: evolutionary and systematic implications. Protist. 164: 272-86. PMID 23021907 DOI: 10.1016/J.Protis.2012.08.002  0.793
2013 O'Malley MA, Simpson AGB, Roger AJ. The other eukaryotes in light of evolutionary protistology Biology and Philosophy. 28: 299-330. DOI: 10.1007/S10539-012-9354-Y  0.68
2013 Roger AJ, Kolisko M, Simpson AGB. Phylogenomic Analysis Evolution of Virulence in Eukaryotic Microbes. 44-69. DOI: 10.1002/9781118308165.ch3  0.732
2012 Tsaousis AD, De Choudens SO, Gentekaki E, Long S, Gaston D, Stechmann A, Vinella D, Py B, Fontecave M, Barras F, Lukeš J, Roger AJ. Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis Proceedings of the National Academy of Sciences of the United States of America. 109: 10426-10431. PMID 22699510 DOI: 10.1073/Pnas.1116067109  0.799
2012 Brown MW, Kolisko M, Silberman JD, Roger AJ. Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria. Current Biology : Cb. 22: 1123-7. PMID 22608512 DOI: 10.1016/J.Cub.2012.04.021  0.813
2012 Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, ... ... Roger A, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071  0.346
2012 Takishita K, Kolisko M, Komatsuzaki H, Yabuki A, Inagaki Y, Cepicka I, Smejkalová P, Silberman JD, Hashimoto T, Roger AJ, Simpson AG. Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of 'amitochondriate' diplomonads and retortamonads. Protist. 163: 344-55. PMID 22364773 DOI: 10.1016/J.Protis.2011.12.007  0.842
2012 Takishita K, Chikaraishi Y, Leger MM, Kim E, Yabuki A, Ohkouchi N, Roger AJ. Lateral transfer of tetrahymanol-synthesizing genes has allowed multiple diverse eukaryote lineages to independently adapt to environments without oxygen. Biology Direct. 7: 5. PMID 22296756 DOI: 10.1186/1745-6150-7-5  0.806
2012 Torruella G, Derelle R, Paps J, Lang BF, Roger AJ, Shalchian-Tabrizi K, Ruiz-Trillo I. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution. 29: 531-44. PMID 21771718 DOI: 10.1093/Molbev/Msr185  0.821
2011 Hampl V, Stairs CW, Roger AJ. The tangled past of eukaryotic enzymes involved in anaerobic metabolism. Mobile Genetic Elements. 1: 71-74. PMID 22016847 DOI: 10.4161/Mge.1.1.15588  0.817
2011 Kamikawa R, Inagaki Y, Roger AJ, Hashimoto T. Splintrons in Giardia intestinalis: Spliceosomal introns in a split form. Communicative & Integrative Biology. 4: 454-6. PMID 21966569 DOI: 10.4161/cib.4.4.15466  0.58
2011 Gaston D, Susko E, Roger AJ. A phylogenetic mixture model for the identification of functionally divergent protein residues. Bioinformatics (Oxford, England). 27: 2655-63. PMID 21840876 DOI: 10.1093/Bioinformatics/Btr470  0.705
2011 Long S, Changmai P, Tsaousis AD, Skalický T, Verner Z, Wen YZ, Roger AJ, Lukeš J. Stage-specific requirement for Isa1 and Isa2 proteins in the mitochondrion of Trypanosoma brucei and heterologous rescue by human and Blastocystis orthologues. Molecular Microbiology. 81: 1403-18. PMID 21790804 DOI: 10.1111/j.1365-2958.2011.07769.x  0.67
2011 Kamikawa R, Inagaki Y, Tokoro M, Roger AJ, Hashimoto T. Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing. Current Biology : Cb. 21: 311-5. PMID 21315596 DOI: 10.1016/j.cub.2011.01.025  0.583
2011 Stairs CW, Roger AJ, Hampl V. Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a Firmicute. Molecular Biology and Evolution. 28: 2087-99. PMID 21293046 DOI: 10.1093/Molbev/Msr032  0.828
2011 Tsaousis AD, Gaston D, Stechmann A, Walker PB, Lithgow T, Roger AJ. A functional Tom70 in the human parasite Blastocystis sp.: implications for the evolution of the mitochondrial import apparatus. Molecular Biology and Evolution. 28: 781-91. PMID 20871025 DOI: 10.1093/Molbev/Msq252  0.841
2010 Barberà MJ, Ruiz-Trillo I, Tufts JY, Bery A, Silberman JD, Roger AJ. Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties. Eukaryotic Cell. 9: 1913-24. PMID 21037180 DOI: 10.1128/Ec.00122-10  0.826
2010 Kolisko M, Silberman JD, Cepicka I, Yubuki N, Takishita K, Yabuki A, Leander BS, Inouye I, Inagaki Y, Roger AJ, Simpson AG. A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environmental Microbiology. 12: 2700-10. PMID 20482740 DOI: 10.1111/J.1462-2920.2010.02239.X  0.821
2010 Sebé-Pedrós A, Roger AJ, Lang FB, King N, Ruiz-Trillo I. Ancient origin of the integrin-mediated adhesion and signaling machinery. Proceedings of the National Academy of Sciences of the United States of America. 107: 10142-7. PMID 20479219 DOI: 10.1073/Pnas.1002257107  0.811
2010 Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Molecular Biology and Evolution. 27: 1698-709. PMID 20194427 DOI: 10.1093/molbev/msq059  0.395
2010 Hug LA, Stechmann A, Roger AJ. Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes. Molecular Biology and Evolution. 27: 311-24. PMID 19805439 DOI: 10.1093/molbev/msp237  0.73
2009 Kamikawa R, Sanchez-Perez GF, Sako Y, Roger AJ, Inagaki Y. Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Molecular Phylogenetics and Evolution. 53: 565-70. PMID 19577655 DOI: 10.1016/J.Ympev.2009.06.016  0.814
2009 Gaston D, Tsaousis AD, Roger AJ. Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data. Methods in Enzymology. 457: 21-47. PMID 19426860 DOI: 10.1016/S0076-6879(09)05002-2  0.811
2009 Roger AJ, Simpson AG. Evolution: revisiting the root of the eukaryote tree. Current Biology : Cb. 19: R165-7. PMID 19243692 DOI: 10.1016/J.Cub.2008.12.032  0.733
2009 Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proceedings of the National Academy of Sciences of the United States of America. 106: 3859-64. PMID 19237557 DOI: 10.1073/Pnas.0807880106  0.828
2008 Sanchez-Perez GF, Hampl V, Simpson AG, Roger AJ. A new divergent type of eukaryotic methionine adenosyltransferase is present in multiple distantly related secondary algal lineages. The Journal of Eukaryotic Microbiology. 55: 374-81. PMID 19017057 DOI: 10.1111/J.1550-7408.2008.00349.X  0.834
2008 Kolisko M, Cepicka I, Hampl V, Leigh J, Roger AJ, Kulda J, Simpson AG, Flegr J. Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: implications for the evolutionary history of the double karyomastigont of diplomonads. Bmc Evolutionary Biology. 8: 205. PMID 18627633 DOI: 10.1186/1471-2148-8-205  0.814
2008 Stechmann A, Hamblin K, Pérez-Brocal V, Gaston D, Richmond GS, van der Giezen M, Clark CG, Roger AJ. Organelles in Blastocystis that blur the distinction between mitochondria and hydrogenosomes. Current Biology : Cb. 18: 580-5. PMID 18403202 DOI: 10.1016/J.Cub.2008.03.037  0.741
2008 Leigh JW, Susko E, Baumgartner M, Roger AJ. Testing congruence in phylogenomic analysis. Systematic Biology. 57: 104-15. PMID 18288620 DOI: 10.1080/10635150801910436  0.773
2008 Ruiz-Trillo I, Roger AJ, Burger G, Gray MW, Lang BF. A phylogenomic investigation into the origin of metazoa. Molecular Biology and Evolution. 25: 664-72. PMID 18184723 DOI: 10.1093/Molbev/Msn006  0.821
2008 Hampl V, Silberman JD, Stechmann A, Diaz-Triviño S, Johnson PJ, Roger AJ. Genetic evidence for a mitochondriate ancestry in the 'amitochondriate' flagellate Trimastix pyriformis. Plos One. 3: e1383. PMID 18167542 DOI: 10.1371/Journal.Pone.0001383  0.829
2007 Gill EE, Diaz-Triviño S, Barberà MJ, Silberman JD, Stechmann A, Gaston D, Tamas I, Roger AJ. Novel mitochondrion-related organelles in the anaerobic amoeba Mastigamoeba balamuthi. Molecular Microbiology. 66: 1306-20. PMID 18045382 DOI: 10.1111/J.1365-2958.2007.05979.X  0.819
2007 Rodríguez-Ezpeleta N, Brinkmann H, Burger G, Roger AJ, Gray MW, Philippe H, Lang BF. Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans. Current Biology : Cb. 17: 1420-5. PMID 17689961 DOI: 10.1016/J.Cub.2007.07.036  0.598
2007 Hug LA, Roger AJ. The impact of fossils and taxon sampling on ancient molecular dating analyses. Molecular Biology and Evolution. 24: 1889-97. PMID 17556757 DOI: 10.1093/molbev/msm115  0.654
2007 Andersson JO, Sjögren AM, Horner DS, Murphy CA, Dyal PL, Svärd SG, Logsdon JM, Ragan MA, Hirt RP, Roger AJ. A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution. Bmc Genomics. 8: 51. PMID 17298675 DOI: 10.1186/1471-2164-8-51  0.587
2007 Ruiz-Trillo I, Burger G, Holland PW, King N, Lang BF, Roger AJ, Gray MW. The origins of multicellularity: a multi-taxon genome initiative. Trends in Genetics : Tig. 23: 113-8. PMID 17275133 DOI: 10.1016/J.Tig.2007.01.005  0.789
2006 Goddard MR, Leigh J, Roger AJ, Pemberton AJ. Invasion and persistence of a selfish gene in the Cnidaria. Plos One. 1: e3. PMID 17183657 DOI: 10.1371/Journal.Pone.0000003  0.747
2006 Stechmann A, Baumgartner M, Silberman JD, Roger AJ. The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic. Bmc Evolutionary Biology. 6: 101. PMID 17123440 DOI: 10.1186/1471-2148-6-101  0.807
2006 Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. The Journal of Eukaryotic Microbiology. 53: 379-84. PMID 16968456 DOI: 10.1111/J.1550-7408.2006.00118.X  0.816
2006 Roger AJ, Hug LA. The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1039-54. PMID 16754613 DOI: 10.1098/rstb.2006.1845  0.731
2006 Inagaki Y, Roger AJ. Phylogenetic estimation under codon models can be biased by codon usage heterogeneity. Molecular Phylogenetics and Evolution. 40: 428-34. PMID 16647273 DOI: 10.1016/j.ympev.2006.03.020  0.543
2006 Andersson JO, Hirt RP, Foster PG, Roger AJ. Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. Bmc Evolutionary Biology. 6: 27. PMID 16551352 DOI: 10.1186/1471-2148-6-27  0.587
2006 Inagaki Y, Susko E, Roger AJ. Recombination between elongation factor 1alpha genes from distantly related archaeal lineages. Proceedings of the National Academy of Sciences of the United States of America. 103: 4528-33. PMID 16537397 DOI: 10.1073/Pnas.0600744103  0.587
2006 Simpson AG, Inagaki Y, Roger AJ. Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes. Molecular Biology and Evolution. 23: 615-25. PMID 16308337 DOI: 10.1093/Molbev/Msj068  0.818
2005 Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. The tree of eukaryotes. Trends in Ecology & Evolution. 20: 670-6. PMID 16701456 DOI: 10.1016/J.Tree.2005.09.005  0.665
2005 Andersson JO, Sarchfield SW, Roger AJ. Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids. Molecular Biology and Evolution. 22: 85-90. PMID 15356278 DOI: 10.1093/molbev/msh254  0.611
2005 SIMPSON AG, INAGAKI Y, ROGER AJ. The evolutionary relationships amongst excavates: a concatened protein analysis The Journal of Eukaryotic Microbiology. 52: 7S-27S. DOI: 10.1111/J.1550-7408.2005.05202003_1_68.X  0.809
2004 Simpson AG, Gill EE, Callahan HA, Litaker RW, Roger AJ. Early evolution within kinetoplastids (euglenozoa), and the late emergence of trypanosomatids. Protist. 155: 407-22. PMID 15648721 DOI: 10.1078/1434461042650389  0.817
2004 Ruiz-Trillo I, Inagaki Y, Davis LA, Sperstad S, Landfald B, Roger AJ. Capsaspora owczarzaki is an independent opisthokont lineage. Current Biology : Cb. 14: R946-7. PMID 15556849 DOI: 10.1016/J.Cub.2004.10.037  0.799
2004 Inagaki Y, Simpson AGB, Dacks JB, Roger AJ. Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: Dinoflagellate plastid origins as a case study Systematic Biology. 53: 582-593. PMID 15371248 DOI: 10.1080/10635150490468756  0.71
2004 Simpson AG, Roger AJ. The real 'kingdoms' of eukaryotes. Current Biology : Cb. 14: R693-6. PMID 15341755 DOI: 10.1016/J.Cub.2004.08.038  0.769
2004 Susko E, Inagaki Y, Roger AJ. On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled. Molecular Biology and Evolution. 21: 1629-42. PMID 15155796 DOI: 10.1093/Molbev/Msh159  0.488
2004 Silberman JD, Collins AG, Gershwin LA, Johnson PJ, Roger AJ. Ellobiopsids of the genus Thalassomyces are alveolates. The Journal of Eukaryotic Microbiology. 51: 246-52. PMID 15134262 DOI: 10.1111/J.1550-7408.2004.Tb00555.X  0.82
2004 Inagaki Y, Susko E, Fast NM, Roger AJ. Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies. Molecular Biology and Evolution. 21: 1340-9. PMID 15034136 DOI: 10.1093/Molbev/Msh130  0.536
2004 Simpson AG, Roger AJ. Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa. Molecular Phylogenetics and Evolution. 30: 201-12. PMID 15022770 DOI: 10.1016/S1055-7903(03)00177-5  0.814
2003 Dacks JB, Davis LA, Sjögren AM, Andersson JO, Roger AJ, Doolittle WF. Evidence for Golgi bodies in proposed 'Golgi-lacking' lineages. Proceedings. Biological Sciences / the Royal Society. 270: S168-71. PMID 14667372 DOI: 10.1098/Rsbl.2003.0058  0.774
2003 Inagaki Y, Blouin C, Susko E, Roger AJ. Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria. Nucleic Acids Research. 31: 4227-37. PMID 12853641 DOI: 10.1093/Nar/Gkg440  0.478
2003 Andersson JO, Roger AJ. Evolution of glutamate dehydrogenase genes: evidence for lateral gene transfer within and between prokaryotes and eukaryotes. Bmc Evolutionary Biology. 3: 14. PMID 12820901 DOI: 10.1186/1471-2148-3-14  0.525
2003 Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 39-57; discussion 57. PMID 12594917 DOI: 10.1098/Rstb.2002.1185  0.748
2003 Andersson JO, Sjögren AM, Davis LA, Embley TM, Roger AJ. Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. Current Biology : Cb. 13: 94-104. PMID 12546782  0.581
2003 Blouin C, Boucher Y, Roger AJ. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information. Nucleic Acids Research. 31: 790-7. PMID 12527789 DOI: 10.1093/Nar/Gkg151  0.521
2002 Andersson JO, Roger AJ. Evolutionary analyses of the small subunit of glutamate synthase: gene order conservation, gene fusions, and prokaryote-to-eukaryote lateral gene transfers. Eukaryotic Cell. 1: 304-10. PMID 12455964  0.555
2002 Simpson AG, Lukes J, Roger AJ. The evolutionary history of kinetoplastids and their kinetoplasts. Molecular Biology and Evolution. 19: 2071-83. PMID 12446799 DOI: 10.1093/Oxfordjournals.Molbev.A004032  0.84
2002 Simpson AG, Roger AJ. Eukaryotic evolution: getting to the root of the problem. Current Biology : Cb. 12: R691-3. PMID 12401185 DOI: 10.1016/S0960-9822(02)01207-1  0.823
2002 Simpson AG, Roger AJ, Silberman JD, Leipe DD, Edgcomb VP, Jermiin LS, Patterson DJ, Sogin ML. Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia. Molecular Biology and Evolution. 19: 1782-91. PMID 12270904 DOI: 10.1093/Oxfordjournals.Molbev.A004000  0.833
2002 Simpson AG, MacQuarrie EK, Roger AJ. Eukaryotic evolution: early origin of canonical introns. Nature. 419: 270. PMID 12239559 DOI: 10.1038/419270A  0.817
2002 O'Malley MA, Roger AJ, Doolittle WF. Can commercial protection be good for research? Nature. 419: 111. PMID 12226635 DOI: 10.1038/419111A  0.636
2002 Susko E, Inagaki Y, Field C, Holder ME, Roger AJ. Testing for differences in rates-across-sites distributions in phylogenetic subtrees. Molecular Biology and Evolution. 19: 1514-23. PMID 12200479 DOI: 10.1093/Oxfordjournals.Molbev.A004214  0.482
2002 Roger AJ, Silberman JD. Cell evolution: mitochondria in hiding. Nature. 418: 827-9. PMID 12192393 DOI: 10.1038/418827A  0.791
2002 Archibald JM, Roger AJ. Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals. Journal of Molecular Evolution. 55: 232-45. PMID 12107599 DOI: 10.1007/S00239-002-2321-5  0.575
2002 Inagaki Y, Doolittle WF, Baldauf SL, Roger AJ. Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria. Current Biology : Cb. 12: 772-6. PMID 12007424 DOI: 10.1016/S0960-9822(02)00816-3  0.795
2002 Silberman JD, Simpson AG, Kulda J, Cepicka I, Hampl V, Johnson PJ, Roger AJ. Retortamonad flagellates are closely related to diplomonads--implications for the history of mitochondrial function in eukaryote evolution. Molecular Biology and Evolution. 19: 777-86. PMID 11961110 DOI: 10.1093/Oxfordjournals.Molbev.A004135  0.839
2002 Archibald JM, Roger AJ. Gene duplication and gene conversion shape the evolution of archaeal chaperonins. Journal of Molecular Biology. 316: 1041-50. PMID 11884142 DOI: 10.1006/Jmbi.2002.5409  0.592
2002 Andersson JO, Roger AJ. A cyanobacterial gene in nonphotosynthetic protists--an early chloroplast acquisition in eukaryotes? Current Biology : Cb. 12: 115-9. PMID 11818061  0.58
2002 Inagaki Y, Blouin C, Doolittle WF, Roger AJ. Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity. Nucleic Acids Research. 30: 532-44. PMID 11788716 DOI: 10.1093/Nar/30.2.532  0.637
2001 Klein M, Friedrich M, Roger AJ, Hugenholtz P, Fishbain S, Abicht H, Blackall LL, Stahl DA, Wagner M. Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes Journal of Bacteriology. 183: 6028-6035. PMID 11567003 DOI: 10.1128/Jb.183.20.6028-6035.2001  0.355
2001 Morrison HG, Roger AJ, Nystul TG, Gillin FD, Sogin ML. Giardia lamblia expresses a proteobacterial-like DnaK homolog. Molecular Biology and Evolution. 18: 530-41. PMID 11264404 DOI: 10.1093/Oxfordjournals.Molbev.A003832  0.368
2001 Edgcomb VP, Roger AJ, Simpson AG, Kysela DT, Sogin ML. Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies. Molecular Biology and Evolution. 18: 514-22. PMID 11264402 DOI: 10.1093/Oxfordjournals.Molbev.A003830  0.804
2000 Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF. A kingdom-level phylogeny of eukaryotes based on combined protein data Science. 290: 972-977. PMID 11062127 DOI: 10.1126/Science.290.5493.972  0.757
1999 Dacks J, Roger AJ. The first sexual lineage and the relevance of facultative sex Journal of Molecular Evolution. 48: 779-783. PMID 10229582 DOI: 10.1007/Pl00013156  0.499
1999 Roger AJ, Morrison HG, Sogin ML. Primary structure and phylogenetic relationships of a malate dehydrogenase gene from Giardia lamblia Journal of Molecular Evolution. 48: 750-755. PMID 10229579 DOI: 10.1007/Pl00006519  0.386
1999 Roger AJ, Sandblom O, Doolittle WF, Philippe H. An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes. Molecular Biology and Evolution. 16: 218-33. PMID 10028289  0.49
1998 Edgcomb V, Viscogliosi E, Simpson AG, Delgado-Viscogliosi P, Roger AJ, Sogin ML. New Insights into the Phylogeny of Trichomonads Inferred from Small Subunit rRNA Sequences. Protist. 149: 359-66. PMID 23194718 DOI: 10.1016/S1434-4610(98)70042-2  0.734
1998 Beaton MJ, Roger AJ, Cavalier-Smith T. Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals. Journal of Molecular Evolution. 47: 697-708. PMID 9847412 DOI: 10.1007/Pl00006429  0.356
1998 Fast NM, Roger AJ, Richardson CA, Doolittle WF. U2 and U6 snRNA genes in the microsporidian Nosema locustae: evidence for a functional spliceosome. Nucleic Acids Research. 26: 3202-7. PMID 9628919 DOI: 10.1093/Nar/26.13.3202  0.478
1998 Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA. Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration Journal of Bacteriology. 180: 2975-2982. PMID 9603890 DOI: 10.1128/Jb.180.11.2975-2982.1998  0.322
1998 Roger AJ, Svärd SG, Tovar J, Clark CG, Smith MW, Gillin FD, Sogin ML. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria Proceedings of the National Academy of Sciences of the United States of America. 95: 229-234. PMID 9419358 DOI: 10.1073/pnas.95.1.229  0.399
1997 Rozario C, Morin L, Roger AJ, Smith MW, Müller M. Primary structure and phylogenetic relationships of glyceraldehyde-3-phosphate dehydrogenase genes of free-living and parasitic diplomonad flagellates. The Journal of Eukaryotic Microbiology. 43: 330-40. PMID 8768438 DOI: 10.1111/j.1550-7408.1996.tb03997.x  0.352
1996 Roger AJ, Smith MW, Doolittle RF, Doolittle WF. Evidence for the Heterolobosea from phylogenetic analysis of genes encoding glyceraldehyde-3-phosphate dehydrogenase. The Journal of Eukaryotic Microbiology. 43: 475-85. PMID 8976605 DOI: 10.1111/J.1550-7408.1996.Tb04507.X  0.595
1996 Roger AJ, Clark CG, Doolittle WF. A possible mitochondrial gene in the early-branching amitochondriate protist Trichomonas vaginalis Proceedings of the National Academy of Sciences of the United States of America. 93: 14618-14622. PMID 8962102 DOI: 10.1073/pnas.93.25.14618  0.623
1995 Keeling PJ, Roger AJ. The selfish pursuit of sex. Nature. 375: 283. PMID 7753189 DOI: 10.1038/375283A0  0.324
1995 Clark CG, Roger AJ. Direct evidence for secondary loss of mitochondria in Entamoeba histolytica Proceedings of the National Academy of Sciences of the United States of America. 92: 6518-6521. PMID 7604025 DOI: 10.1073/pnas.92.14.6518  0.376
1994 Roger AJ, Keeling PJ, Doolittle WF. Introns, the broken transposons. Society of General Physiologists Series. 49: 27-37. PMID 7939900  0.574
1993 Roger AJ, Doolittle WF. Why introns-in-pieces? Nature. 364: 289-290. PMID 8332184 DOI: 10.1038/364289a0  0.43
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