Thomas Keane - Publications

Affiliations: 
Biology National University of Ireland Maynooth, Maynooth, County Kildare, Ireland 

168 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Rahmatpanah F, Robles G, Lilly M, Keane T, Kumar V, Mercola D, Randhawa P, McClelland M. RNA expression differences in prostate tumors and tumor-adjacent stroma between Black and White Americans. Oncotarget. 12: 1457-1469. PMID 34316327 DOI: 10.18632/oncotarget.28024  0.01
2021 Bonfield JK, Marshall J, Danecek P, Li H, Ohan V, Whitwham A, Keane T, Davies RM. HTSlib: C library for reading/writing high-throughput sequencing data. Gigascience. 10. PMID 33594436 DOI: 10.1093/gigascience/giab007  1
2021 Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham A, Keane T, McCarthy SA, Davies RM, Li H. Twelve years of SAMtools and BCFtools. Gigascience. 10. PMID 33590861 DOI: 10.1093/gigascience/giab008  1
2021 Senf A, Davies R, Haziza F, Marshall J, Troncoso-Pastoriza J, Hofmann O, Keane TM. Crypt4GH: a file format standard enabling native access to encrypted data. Bioinformatics (Oxford, England). PMID 33543751 DOI: 10.1093/bioinformatics/btab087  0.01
2020 Crawford ED, Hafron JM, Tagawa ST, Twardowski PW, Harris RG, Moul JW, Keane TE, Concepcion RS, Higano CS, Gordan LN, Petrylak DP, Cross CK, Kader AK, Shore ND. Impact of Late Dosing on Testosterone Suppression with Two Different Leuprolide Acetate Formulations: In Situ Gel and Microsphere - An Analysis of US Clinical Data. The Journal of Urology. 101097JU000000000000. PMID 33090917 DOI: 10.1097/JU.0000000000001392  0.01
2020 Crawford ED, Andriole G, Freedland SJ, Garnick M, Gomella LG, Henderson J, Higano CT, Kader AK, Kane C, Keane TE, Koo PJ, Petrylak DP, Reiter RE, Slovin SF, Yu EY. Evolving understanding and categorization of prostate cancer: preventing progression to metastatic castration-resistant prostate cancer: RADAR IV. The Canadian Journal of Urology. 27: 10352-10362. PMID 33049187  0.01
2020 Li N, Keane TP, Veroneau SS, Nocera DG. Role of electrolyte composition on the acid stability of mixed-metal oxygen evolution catalysts. Chemical Communications (Cambridge, England). PMID 32785371 DOI: 10.1039/D0Cc03863F  0.04
2020 Sisu C, Muir P, Frankish A, Fiddes I, Diekhans M, Thybert D, Odom DT, Flicek P, Keane TM, Hubbard T, Harrow J, Gerstein M. Transcriptional activity and strain-specific history of mouse pseudogenes. Nature Communications. 11: 3695. PMID 32728065 DOI: 10.1038/S41467-020-17157-W  1
2020 Jaben IL, Cote GA, Forster E, Moran RA, Broussard KA, Scott N, Cotton PB, Keane T, Elmunzer BJ. Comparison of Urologist- vs Gastroenterologist-Directed Extracorporeal Shock Wave Lithotripsy for Pancreaticolithiasis. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 32712398 DOI: 10.1016/j.cgh.2020.07.042  0.01
2020 Li N, Keane TP, Veroneau SS, Hadt RG, Hayes D, Chen LX, Nocera DG. Template-stabilized oxidic nickel oxygen evolution catalysts. Proceedings of the National Academy of Sciences of the United States of America. PMID 32636264 DOI: 10.1073/Pnas.2001529117  0.01
2020 Moskowitz JE, Doran AG, Lei Z, Busi SB, Hart ML, Franklin CL, Sumner LW, Keane TM, Amos-Landgraf JM. Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation. Bmc Cancer. 20: 600. PMID 32600361 DOI: 10.1186/S12885-020-07007-9  1
2020 O'Sullivan B, Hui Huang S, Keane T, Xu W, Su J, Waldron J, Gullane P, Liu FF, Warde P, Payne D, Tong L, Cummings B. Durable therapeutic gain despite competing mortality in long-term follow-up of a randomized hyperfractionated radiotherapy trial for locally advanced head and neck cancer. Clinical and Translational Radiation Oncology. 21: 69-76. PMID 32055717 DOI: 10.1016/J.Ctro.2020.01.003  1
2020 Sloan AA, Keane T, Pettie JR, Bhuiya AR, Taylor LN, Bates M, Bernard S, Akinleye F, Gilchrist S. Mapping and Analysis of US State and Urban Local Sodium Reduction Laws. Journal of Public Health Management and Practice : Jphmp. 26: S62-S70. PMID 32004224 DOI: 10.1097/PHH.0000000000001124  0.01
2019 Lilue J, Shivalikanjli A, Adams DJ, Keane TM. Mouse protein coding diversity: What's left to discover? Plos Genetics. 15: e1008446. PMID 31725724 DOI: 10.1371/Journal.Pgen.1008446  1
2019 Crawford ED, Twardowski PW, Concepcion RS, Hafron JM, Harris RG, Moul JW, Gordan LN, Petrylak DP, Atkinson S, Boldt-Houle D, Keane TE, Higano CS, Henderson RJ, Kader AK, Hussain MH, et al. The Impact of Late LHRH Agonist Dosing on Testosterone Suppression in Prostate Cancer Patients: An Analysis of US Clinical Data. The Journal of Urology. 101097JU000000000000. PMID 31580749 DOI: 10.1097/JU.0000000000000577  0.01
2019 Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, ... ... Keane TM, et al. Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews. Genetics. PMID 31520075 DOI: 10.1038/S41576-019-0178-3  1
2019 Lindsay SJ, Rahbari R, Kaplanis J, Keane T, Hurles ME. Similarities and differences in patterns of germline mutation between mice and humans. Nature Communications. 10: 4053. PMID 31492841 DOI: 10.1038/s41467-019-12023-w  0.01
2019 Keane TP, Nocera DG. Selective Production of Oxygen from Seawater by Oxidic Metallate Catalysts. Acs Omega. 4: 12860-12864. PMID 31460412 DOI: 10.1021/acsomega.9b01751  0.08
2019 Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, ... ... Keane TM, et al. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews. Genetics. PMID 31455890 DOI: 10.1038/S41576-019-0156-9  1
2019 Allchin RL, Kelly ME, Mamand S, Doran AG, Keane T, Ahearne MJ, Wagner SD. Structural and diffusion weighted MRI demonstrates responses to ibrutinib in a mouse model of follicular helper (Tfh) T-cell lymphoma. Plos One. 14: e0215765. PMID 31013298 DOI: 10.1371/Journal.Pone.0215765  1
2018 Harrison PW, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Holt S, Hussein A, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Milano A, Pakseresht N, et al. The European Nucleotide Archive in 2018. Nucleic Acids Research. PMID 30395270 DOI: 10.1093/Nar/Gky1078  0.01
2018 Kolmogorov M, Armstrong J, Raney BJ, Streeter I, Dunn M, Yang F, Odom D, Flicek P, Keane TM, Thybert D, Paten B, Pham S. Chromosome assembly of large and complex genomes using multiple references. Genome Research. PMID 30341161 DOI: 10.1101/Gr.236273.118  1
2018 Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, ... ... Keane TM, et al. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nature Genetics. PMID 30275530 DOI: 10.1038/S41588-018-0223-8  1
2018 Crawford ED, Koo PJ, Shore N, Slovin SF, Concepcion RS, Freedland SJ, Gomella LG, Karsh L, Keane TE, Maroni P, Penson D, Petrylak DP, Ross A, Mouraviev V, Reiter RE, et al. A Clinician's Guide to Next Generation Imaging in Patients With Advanced Prostate Cancer (Prostate Cancer Radiographic Assessments for Detection of Advanced Recurrence [RADAR] III). The Journal of Urology. PMID 30077557 DOI: 10.1016/j.juro.2018.05.164  0.01
2018 Dykes IM, Szumska D, Kuncheria L, Puliyadi R, Chen CM, Papanayotou C, Lockstone H, Dubourg C, David V, Schneider JE, Keane TM, Adams DJ, Brown SDM, Mercier S, Odent S, et al. A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity. Scientific Reports. 8: 10439. PMID 29992973 DOI: 10.1038/S41598-018-28714-1  1
2018 Kelleher J, Lin M, Albach CH, Birney E, Davies R, Gourtovaia M, Glazer D, Gonzalez CY, Jackson DK, Kemp A, Marshall J, Nowak A, Senf A, Tovar-Corona JM, Vikhorev A, ... Keane TM, et al. htsget: a protocol for securely streaming genomic data. Bioinformatics (Oxford, England). PMID 29931085 DOI: 10.1093/Bioinformatics/Bty492  0.01
2018 Fiddes IT, Armstrong J, Diekhans M, Nachtweide S, Kronenberg ZN, Underwood JG, Gordon D, Earl D, Keane T, Eichler EE, Haussler D, Stanke M, Paten B. Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. Genome Research. PMID 29884752 DOI: 10.1101/Gr.233460.117  1
2018 Gstrein T, Edwards A, Přistoupilová A, Leca I, Breuss M, Pilat-Carotta S, Hansen AH, Tripathy R, Traunbauer AK, Hochstoeger T, Rosoklija G, Repic M, Landler L, Stránecký V, Dürnberger G, ... Keane TM, et al. Publisher Correction: Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans. Nature Neuroscience. PMID 29875394 DOI: 10.1038/S41593-018-0170-9  1
2018 Lin DW, Crawford ED, Keane T, Evans B, Reid J, Rajamani S, Brown K, Gutin A, Tward J, Scardino P, Brawer M, Stone S, Cuzick J. Identification of men with low-risk biopsy-confirmed prostate cancer as candidates for active surveillance. Urologic Oncology. PMID 29655620 DOI: 10.1016/j.urolonc.2018.03.011  0.01
2018 Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, ... ... Keane TM, et al. Repeat associated mechanisms of genome evolution and function revealed by theandgenomes. Genome Research. PMID 29563166 DOI: 10.1101/Gr.234096.117  1
2018 Gstrein T, Edwards A, Přistoupilová A, Leca I, Breuss M, Pilat-Carotta S, Hansen AH, Tripathy R, Traunbauer AK, Hochstoeger T, Rosoklija G, Repic M, Landler L, Stránecký V, Dürnberger G, ... Keane TM, et al. Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans. Nature Neuroscience. PMID 29311744 DOI: 10.1038/S41593-017-0053-5  1
2017 Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, et al. The European Nucleotide Archive in 2017. Nucleic Acids Research. PMID 29140475 DOI: 10.1093/Nar/Gkx1125  0.01
2017 Collins C, Hurley R, Almutlaqah N, O'Keeffe G, Keane TM, Fitzpatrick DA, Owens RA. Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles. Microorganisms. 5. PMID 28926970 DOI: 10.3390/microorganisms5030060  1
2017 Keane TC. Mechanism for the Coupled Photochemistry of Ammonia and Acetylene: Implications for Giant Planets, Comets and Interstellar Organic Synthesis. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. PMID 28791552 DOI: 10.1007/s11084-017-9545-2  0.01
2017 Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms. Scientific Reports. 7: 3935. PMID 28638050 DOI: 10.1038/S41598-017-03996-Z  1
2017 Morgan AP, Gatti DM, Najarian ML, Keane TM, Galante RJ, Pack AI, Mott R, Churchill GA, de Villena FP. Structural Variation Shapes the Landscape of Recombination in Mouse. Genetics. 206: 603-619. PMID 28592499 DOI: 10.1534/Genetics.116.197988  1
2017 Ibarra-Soria X, Nakahara TS, Lilue J, Jiang Y, Trimmer C, Souza MA, Netto PH, Ikegami K, Murphy NR, Kusma M, Kirton A, Saraiva LR, Keane TM, Matsunami H, Mainland J, et al. Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated. Elife. 6. PMID 28438259 DOI: 10.7554/Elife.21476  1
2017 Greiman AK, Keane TE. Approach to Androgen Deprivation in the Prostate Cancer Patient with Pre-existing Cardiovascular Disease. Current Urology Reports. 18: 41. PMID 28417429 DOI: 10.1007/s11934-017-0688-5  0.01
2017 Crawford ED, Schally AV, Pinthus JH, Block NL, Rick FG, Garnick MB, Eckel RH, Keane TE, Shore ND, Dahdal DN, Beveridge TJ, Marshall DC. The potential role of follicle-stimulating hormone in the cardiovascular, metabolic, skeletal, and cognitive effects associated with androgen deprivation therapy. Urologic Oncology. PMID 28325650 DOI: 10.1016/J.Urolonc.2017.01.025  0.01
2017 Crawford ED, Petrylak DP, Shore N, Saad F, Slovin SF, Vogelzang NJ, Keane TE, Koo PJ, Gomella LG, O'Sullivan JM, Tombal B, Concepcion RS, Sieber P, Stone NN, Finkelstein SE, et al. The Role of Therapeutic Layering in Optimizing Treatment for Patients with Castration-Resistant Prostate Cancer (RADAR II). Urology. PMID 28302580 DOI: 10.1016/J.Urology.2016.12.033  0.01
2017 Sandor C, Honti F, Haerty W, Szewczyk-Krolikowski K, Tomlinson P, Evetts S, Millin S, Keane T, McCarthy SA, Durbin R, Talbot K, Hu M, Webber C, Ponting CP, Wade-Martins R. Whole-exome sequencing of 228 patients with sporadic Parkinson's disease. Scientific Reports. 7: 41188. PMID 28117402 DOI: 10.1038/Srep41188  1
2016 Crawford ED, Albala DM, Wysocki JS, Lepor H, Ross AE, Finkelstein SE, Keane T, Freedland S, Harris R, Shore ND, Ryan CJ. Prostate Cancer Academy 2016: Presentation summaries. Reviews in Urology. 18: 205-213. PMID 28127262 DOI: 10.3909/riuPCA2016  0.01
2016 Dolle DD, Liu Z, Cotten ML, Simpson JT, Iqbal Z, Durbin R, McCarthy SA, Keane TM. Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes. Genome Research. PMID 27986821 DOI: 10.1101/Gr.211748.116  1
2016 Forment JV, Herzog M, Coates J, Konopka T, Gapp BV, Nijman SM, Adams DJ, Keane TM, Jackson SP. Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells. Nature Chemical Biology. PMID 27820796 DOI: 10.1038/Nchembio.2226  1
2016 Morgan AP, Didion JP, Doran AG, Holt JM, McMillan L, Keane TM, Pardo-Manuel de Villena F. Genome Report: Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers. G3 (Bethesda, Md.). PMID 27765810 DOI: 10.1534/G3.116.034751  1
2016 Doran AG, Wong K, Flint J, Adams DJ, Hunter KW, Keane TM. Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations. Genome Biology. 17: 167. PMID 27480531 DOI: 10.1186/S13059-016-1024-Y  1
2016 Bai L, Yang HH, Hu Y, Shukla A, Ha NH, Doran A, Faraji F, Goldberger N, Lee MP, Keane T, Hunter KW. An Integrated Genome-Wide Systems Genetics Screen for Breast Cancer Metastasis Susceptibility Genes. Plos Genetics. 12: e1005989. PMID 27074153 DOI: 10.1371/Journal.Pgen.1005989  1
2016 Evans CP, Higano CS, Keane T, Andriole G, Saad F, Iversen P, Miller K, Kim CS, Kimura G, Armstrong AJ, Sternberg CN, Loriot Y, de Bono J, Noonberg SB, Mansbach H, et al. The PREVAIL Study: Primary Outcomes by Site and Extent of Baseline Disease for Enzalutamide-treated Men with Chemotherapy-naïve Metastatic Castration-resistant Prostate Cancer. European Urology. PMID 27006332 DOI: 10.1016/J.Eururo.2016.03.017  1
2016 Greiman A, Shah J, Bhavsar R, Jones R, Armeson K, Caulder S, Jones R, Keane TE, Clarke HS, Savage SJ. Six Weeks of Fluoroquinolone Antibiotic Therapy for Patients with Elevated Serum PSA is not Clinically Beneficial: A Randomized Controlled Clinical Trial. Urology. PMID 26802800 DOI: 10.1016/j.urology.2015.11.046  0.01
2016 Hunter KW, Bai L, Yang HH, Hu Y, Shukla A, Ha N, Doran A, Faraji F, Goldberger N, Lee MP, Keane T. Abstract IA21: An integrated genome-wide systems genetics screen for breast cancer metastasis susceptibility genes Cancer Research. 76. DOI: 10.1158/1538-7445.Tummet15-Ia21  1
2015 Owens RA, O'Keeffe G, Smith EB, Dolan SK, Hammel S, Sheridan KJ, Fitzpatrick DA, Keane TM, Jones GW, Doyle S. Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus. Eukaryotic Cell. 14: 941-57. PMID 26150413 DOI: 10.1128/EC.00055-15  1
2015 Adams DJ, Doran AG, Lilue J, Keane TM. The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 26123534 DOI: 10.1007/S00335-015-9579-6  1
2015 Iyer V, Shen B, Zhang W, Hodgkins A, Keane T, Huang X, Skarnes WC. Off-target mutations are rare in Cas9-modified mice. Nature Methods. 12: 479. PMID 26020497 DOI: 10.1038/Nmeth.3408  1
2015 Puddu F, Oelschlaegel T, Guerini I, Geisler NJ, Niu H, Herzog M, Salguero I, Ochoa-Montaño B, Viré E, Sung P, Adams DJ, Keane TM, Jackson SP. Synthetic viability genomic screening defines Sae2 function in DNA repair. The Embo Journal. 34: 1509-22. PMID 25899817 DOI: 10.15252/Embj.201590973  1
2015 Karreth FA, Reschke M, Ruocco A, Ng C, Chapuy B, Léopold V, Sjoberg M, Keane TM, Verma A, Ala U, Tay Y, Wu D, Seitzer N, Velasco-Herrera Mdel C, Bothmer A, et al. The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo. Cell. 161: 319-32. PMID 25843629 DOI: 10.1016/J.Cell.2015.02.043  1
2015 Shore ND, Karsh L, Gomella LG, Keane TE, Concepcion RS, Crawford ED. Avoiding obsolescence in advanced prostate cancer management: a guide for urologists. Bju International. 115: 188-97. PMID 25756134 DOI: 10.1111/bju.12665  1
2015 Medina-Ramos J, Pupillo RC, Keane TP, DiMeglio JL, Rosenthal J. Efficient Conversion of CO₂ to CO Using Tin and Other Inexpensive and Easily Prepared Post-Transition Metal Catalysts. Journal of the American Chemical Society. 137: 5021-7. PMID 25697668 DOI: 10.1021/Ja5121088  1
2015 Jeffares DC, Rallis C, Rieux A, Speed D, P?evorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, ... ... Keane T, et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nature Genetics. 47: 235-41. PMID 25665008 DOI: 10.1038/Ng.3215  1
2015 Aoude LG, Pritchard AL, Robles-Espinoza CD, Wadt K, Harland M, Choi J, Gartside M, Quesada V, Johansson P, Palmer JM, Ramsay AJ, Zhang X, Jones K, Symmons J, Holland EA, ... ... Keane TM, et al. Nonsense mutations in the shelterin complex genes ACD and TERF2IP in familial melanoma. Journal of the National Cancer Institute. 107. PMID 25505254 DOI: 10.1093/Jnci/Dju408  1
2015 Westcott PM, Halliwill KD, To MD, Rashid M, Rust AG, Keane TM, Delrosario R, Jen KY, Gurley KE, Kemp CJ, Fredlund E, Quigley DA, Adams DJ, Balmain A. The mutational landscapes of genetic and chemical models of Kras-driven lung cancer. Nature. 517: 489-92. PMID 25363767 DOI: 10.1038/Nature13898  1
2015 Yu EY, Getzenberg RH, Coss CC, Gittelman MM, Keane T, Tutrone R, Belkoff L, Given R, Bass J, Chu F, Gambla M, Gaylis F, Bailen J, Hancock ML, Smith J, et al. Selective estrogen receptor alpha agonist GTx-758 decreases testosterone with reduced side effects of androgen deprivation therapy in men with advanced prostate cancer. European Urology. 67: 334-41. PMID 24968970 DOI: 10.1016/j.eururo.2014.06.011  1
2015 Shukla A, Bai L, Yang H, Doran A, Hu Y, Geiger T, Lee M, Keane T, Hunter KW. Abstract 4138: Integrating SNPs, epigenetics and transcriptomics to better understand the inherited predisposition to breast cancer metastasis Cancer Research. 75: 4138-4138. DOI: 10.1158/1538-7445.Am2015-4138  1
2014 O'Keeffe G, Hammel S, Owens RA, Keane TM, Fitzpatrick DA, Jones GW, Doyle S. RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus. Bmc Genomics. 15: 894. PMID 25311525 DOI: 10.1186/1471-2164-15-894  1
2014 Joshi PC, Li HH, Merchant M, Keane TC. Total inhibition of (1)O2-induced oxidative damage to guanine bases of DNA/RNA by turmeric extracts. Biochemical and Biophysical Research Communications. 452: 515-9. PMID 25181345 DOI: 10.1016/j.bbrc.2014.08.105  1
2014 Keane TM, Wong K, Adams DJ, Flint J, Reymond A, Yalcin B. Identification of structural variation in mouse genomes. Frontiers in Genetics. 5: 192. PMID 25071822 DOI: 10.3389/Fgene.2014.00192  1
2014 Dove WF, Shedlovsky A, Clipson L, Amos-Landgraf JM, Halberg RB, Krentz KJ, Boehm FJ, Newton MA, Adams DJ, Keane TM. A strategy to identify dominant point mutant modifiers of a quantitative trait. G3 (Bethesda, Md.). 4: 1113-21. PMID 24747760 DOI: 10.1534/G3.114.010595  1
2014 Robles-Espinoza CD, Harland M, Ramsay AJ, Aoude LG, Quesada V, Ding Z, Pooley KA, Pritchard AL, Tiffen JC, Petljak M, Palmer JM, Symmons J, Johansson P, Stark MS, Gartside MG, ... ... Keane TM, et al. POT1 loss-of-function variants predispose to familial melanoma. Nature Genetics. 46: 478-81. PMID 24686849 DOI: 10.1038/Ng.2947  1
2014 Maguire S, Estabel J, Ingham N, Pearson S, Ryder E, Carragher DM, Walker N, Bussell J, Chan WI, Keane TM, Adams DJ, Scudamore CL, Lelliott CJ, Ramírez-Solis R, et al. Targeting of Slc25a21 is associated with orofacial defects and otitis media due to disrupted expression of a neighbouring gene. Plos One. 9: e91807. PMID 24642684 DOI: 10.1371/Journal.Pone.0091807  1
2014 Crawford ED, Stone NN, Yu EY, Koo PJ, Freedland SJ, Slovin SF, Gomella LG, Berger ER, Keane TE, Sieber P, Shore ND, Petrylak DP. Challenges and recommendations for early identification of metastatic disease in prostate cancer. Urology. 83: 664-9. PMID 24411213 DOI: 10.1016/j.urology.2013.10.026  1
2014 Marshall DT, Ramey S, Golshayan AR, Keane TE, Kraft AS, Chaudhary U. Phase I trial of weekly docetaxel, total androgen blockade, and image-guided intensity-modulated radiotherapy for localized high-risk prostate adenocarcinoma. Clinical Genitourinary Cancer. 12: 80-6. PMID 24378335 DOI: 10.1016/j.clgc.2013.11.019  1
2014 Chaudhary UB, Verma N, Keane T, Gudena V. A phase II study of gemcitabine and irinotecan in patients with locally advanced or metastatic bladder cancer. American Journal of Clinical Oncology. 37: 188-93. PMID 23241501 DOI: 10.1097/COC.0b013e318271b306  0.01
2013 Golshayan AR, Keane TE, Kraft AS, Chaudhary UB, Marshall DT. Phase I trial of total androgen blockade, weekly docetaxel, and image-guided intensity-modulated radiotherapy for localized high-risk prostate adenocarcinoma. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 96. PMID 28137154 DOI: 10.1200/jco.2013.31.6_suppl.96  0.01
2013 Keane TE, Tutrone R, Belkoff L, Bass J, Chu F, Gambla M, Gaylis F, Bailen J, Getzenberg RH, Coss C, Hancock ML, Dalton JT, Steiner MS. Effect of the ERα agonist GTx-758 on bone turnover markers in men with advanced prostate cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 222. PMID 28137016 DOI: 10.1200/Jco.2013.31.6_Suppl.222  0.01
2013 Gittelman M, Keane TE, Tutrone R, Belkoff L, Given R, Bass J, Chu F, Gambla M, Gaylis F, Bailen J, Getzenberg RH, Coss C, Hancock ML, Dalton JT, Steiner MS. Effect of GTx-758, an ERα agonist, on serum-free testosterone and serum PSA in men with advanced prostate cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 104. PMID 28137010 DOI: 10.1200/Jco.2013.31.6_Suppl.104  0.01
2013 Gittelman M, Keane TE, Tutrone R, Belkoff L, Bass J, Chu F, Gambla M, Gaylis F, Bailen J, Getzenberg RH, Coss C, Hancock ML, Dalton JT, Steiner MS. Rate of hot flashes in patients with advanced prostate cancer treated with GTx-758. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 129. PMID 28136791 DOI: 10.1200/Jco.2013.31.6_Suppl.129  0.01
2013 Gittelman M, Keane TE, Tutrone R, Belkoff L, Given R, Bass J, Chu F, Gambla M, Gaylis F, Bailen J, Getzenberg RH, Coss C, Hancock ML, Dalton JT, Steiner MS. Serum IGF-1 levels in men with advanced prostate cancer treated with the ERα agonist, GTx-758. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 171. PMID 28136777 DOI: 10.1200/Jco.2013.31.6_Suppl.171  0.01
2013 Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, Keane TM, Adams DJ, Keightley PD. Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents. Plos Genetics. 9: e1003995. PMID 24339797 DOI: 10.1371/Journal.Pgen.1003995  1
2013 Ramsey SD, Zeliadt SB, Blough DK, Moinpour CM, Hall IJ, Smith JL, Ekwueme DU, Fedorenko CR, Fairweather ME, Koepl LM, Thompson IM, Keane TE, Penson DF. Impact of prostate cancer on sexual relationships: a longitudinal perspective on intimate partners' experiences. The Journal of Sexual Medicine. 10: 3135-43. PMID 24118980 DOI: 10.1111/Jsm.12295  1
2013 Cheng JC, Bai A, Beckham TH, Marrison ST, Yount CL, Young K, Lu P, Bartlett AM, Wu BX, Keane BJ, Armeson KE, Marshall DT, Keane TE, Smith MT, Jones EE, et al. Radiation-induced acid ceramidase confers prostate cancer resistance and tumor relapse. The Journal of Clinical Investigation. 123: 4344-58. PMID 24091326 DOI: 10.1172/Jci64791  1
2013 Li C, Zeliadt SB, Hall IJ, Smith JL, Ekwueme DU, Moinpour CM, Penson DF, Thompson IM, Keane TE, Ramsey SD. Burden among partner caregivers of patients diagnosed with localized prostate cancer within 1 year after diagnosis: an economic perspective. Supportive Care in Cancer : Official Journal of the Multinational Association of Supportive Care in Cancer. 21: 3461-9. PMID 23955026 DOI: 10.1007/S00520-013-1931-3  1
2013 Simon MM, Greenaway S, White JK, Fuchs H, Gailus-Durner V, Wells S, Sorg T, Wong K, Bedu E, Cartwright EJ, Dacquin R, Djebali S, Estabel J, Graw J, Ingham NJ, ... ... Keane TM, et al. A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains. Genome Biology. 14: R82. PMID 23902802 DOI: 10.1186/Gb-2013-14-7-R82  1
2013 Atanur SS, Diaz AG, Maratou K, Sarkis A, Rotival M, Game L, Tschannen MR, Kaisaki PJ, Otto GW, Ma MC, Keane TM, Hummel O, Saar K, Chen W, Guryev V, et al. Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat. Cell. 154: 691-703. PMID 23890820 DOI: 10.1016/J.Cell.2013.06.040  1
2013 Baud A, Hermsen R, Guryev V, Stridh P, Graham D, McBride MW, Foroud T, Calderari S, Diez M, Ockinger J, Beyeen AD, Gillett A, Abdelmagid N, Guerreiro-Cacais AO, ... ... Keane T, et al. Combined sequence-based and genetic mapping analysis of complex traits in outbred rats. Nature Genetics. 45: 767-75. PMID 23708188 DOI: 10.1038/Ng.2644  1
2013 Collins C, Keane TM, Turner DJ, O'Keeffe G, Fitzpatrick DA, Doyle S. Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. Journal of Proteome Research. 12: 2552-70. PMID 23656496 DOI: 10.1021/pr301131t  1
2013 Ryder E, Wong K, Gleeson D, Keane TM, Sethi D, Vyas S, Wardle-Jones H, Bussell JN, Houghton R, Salisbury J, Harvey N, Adams DJ, Ramirez-Solis R. Genomic analysis of a novel spontaneous albino C57BL/6N mouse strain. Genesis (New York, N.Y. : 2000). 51: 523-8. PMID 23620107 DOI: 10.1002/Dvg.22398  1
2013 Takada T, Ebata T, Noguchi H, Keane TM, Adams DJ, Narita T, Shin-I T, Fujisawa H, Toyoda A, Abe K, Obata Y, Sakaki Y, Moriwaki K, Fujiyama A, Kohara Y, et al. The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. Genome Research. 23: 1329-38. PMID 23604024 DOI: 10.1101/Gr.156497.113  1
2013 Hardie AD, Rieter WJ, Bradshaw ML, Gordon LL, Young MA, Keane TE. Improved performance of SPECT-CT In-111 capromab pendetide by correlation with diffusion-weighted magnetic resonance imaging for identifying metastatic pelvic lymphadenopathy in prostate cancer. World Journal of Urology. 31: 1327-32. PMID 23595605 DOI: 10.1007/s00345-013-1079-2  1
2013 Wong K, Adams DJ, Keane TM. Go retro and get a GRIP. Genome Biology. 14: 108. PMID 23514103 DOI: 10.1186/Gb-2013-14-3-108  1
2013 Keane TM, Wong K, Adams DJ. RetroSeq: transposable element discovery from next-generation sequencing data. Bioinformatics (Oxford, England). 29: 389-90. PMID 23233656 DOI: 10.1093/Bioinformatics/Bts697  1
2013 Perkins TT, Davies MR, Klemm EJ, Rowley G, Wileman T, James K, Keane T, Maskell D, Hinton JC, Dougan G, Kingsley RA. ChIP-seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovars Typhi and Typhimurium reveals accessory genes implicated in host colonization. Molecular Microbiology. 87: 526-38. PMID 23190111 DOI: 10.1111/Mmi.12111  1
2012 Butler CM, Laboccetta LT, Brisendine A, Keane TE, Sherman CA, Drabkin HA. Phase I trial of the HDAC inhibitor LBH589 in combination with sorafenib in patients with renal cell carcinoma, non-small cell lung cancer and soft tissue sarcomas. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 30: 440. PMID 28143014 DOI: 10.1200/jco.2012.30.5_suppl.440  0.01
2012 Butler CM, Laboccetta LT, Brisendine A, Keane TE, Sherman CA, Drabkin HA. Phase I trial of the HDAC inhibitor LBH589 in combination with sorafenib in patients with renal cell carcinoma, non-small cell lung cancer and soft tissue sarcomas. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 30: 440. PMID 27967955 DOI: 10.1200/jco.2012.30.5_suppl.440  0.01
2012 Bagley BN, Keane TM, Maklakova VI, Marshall JG, Lester RA, Cancel MM, Paulsen AR, Bendzick LE, Been RA, Kogan SC, Cormier RT, Kendziorski C, Adams DJ, Collier LS. A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis. Plos Genetics. 8: e1003034. PMID 23133403 DOI: 10.1371/Journal.Pgen.1003034  1
2012 Wong K, Bumpstead S, Van Der Weyden L, Reinholdt LG, Wilming LG, Adams DJ, Keane TM. Sequencing and characterization of the FVB/NJ mouse genome. Genome Biology. 13: R72. PMID 22916792 DOI: 10.1186/Gb-2012-13-8-R72  1
2012 Li C, Zeliadt SB, Hall IJ, Smith JL, Ekwueme DU, Moinpour CM, Penson DF, Thompson IM, Keane TE, Ramsey SD. Willingness to pay for prostate cancer treatment among patients and their family members at 1 year after diagnosis. Value in Health : the Journal of the International Society For Pharmacoeconomics and Outcomes Research. 15: 716-23. PMID 22867781 DOI: 10.1016/J.Jval.2012.03.003  1
2012 Prasad SM, Keane T, Bennett CL. Editorial comment. Urology. 80: 563. PMID 22789296 DOI: 10.1016/j.urology.2012.02.086  1
2012 Yalcin B, Adams DJ, Flint J, Keane TM. Next-generation sequencing of experimental mouse strains. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 490-8. PMID 22772437 DOI: 10.1007/S00335-012-9402-6  1
2012 Nellåker C, Keane TM, Yalcin B, Wong K, Agam A, Belgard TG, Flint J, Adams DJ, Frankel WN, Ponting CP. The genomic landscape shaped by selection on transposable elements across 18 mouse strains. Genome Biology. 13: R45. PMID 22703977 DOI: 10.1186/Gb-2012-13-6-R45  1
2012 Prasad SM, Keane TE, Bennett CL. Editorial comment. Urology. 80: 168. PMID 22608794 DOI: 10.1016/j.urology.2012.01.069  1
2012 Keane T, Margulis AR, Dakin GF, Pomp A. Imaging of patients after the Lap-Band System application. Abdominal Imaging. 37: 690-6. PMID 22532285 DOI: 10.1007/s00261-012-9859-5  0.01
2012 Danecek P, Nellåker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ. High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biology. 13: 26. PMID 22524474 DOI: 10.1186/Gb-2012-13-4-R26  1
2012 Marshall DT, Savage SJ, Garrett-Mayer E, Keane TE, Hollis BW, Horst RL, Ambrose LH, Kindy MS, Gattoni-Celli S. Vitamin D3 supplementation at 4000 international units per day for one year results in a decrease of positive cores at repeat biopsy in subjects with low-risk prostate cancer under active surveillance. The Journal of Clinical Endocrinology and Metabolism. 97: 2315-24. PMID 22508710 DOI: 10.1210/Jc.2012-1451  1
2012 Yalcin B, Wong K, Bhomra A, Goodson M, Keane TM, Adams DJ, Flint J. The fine-scale architecture of structural variants in 17 mouse genomes. Genome Biology. 13: R18. PMID 22439878 DOI: 10.1186/Gb-2012-13-3-R18  1
2012 Joshi PC, Gray TA, Keane TC. Protection of riboflavin and UVB sensitized degradation of DNA and RNA bases by natural antioxidants. Ecotoxicology and Environmental Safety. 78: 86-90. PMID 22169891 DOI: 10.1016/j.ecoenv.2011.11.011  0.01
2012 Dasgupta S, Shao C, Keane TE, Duberow DP, Mathies RA, Fisher PB, Kiemeney LA, Sidransky D. Detection of mitochondrial deoxyribonucleic acid alterations in urine from urothelial cell carcinoma patients. International Journal of Cancer. Journal International Du Cancer. 131: 158-64. PMID 21826645 DOI: 10.1002/Ijc.26357  1
2012 Picard JC, Golshayan AR, Marshall DT, Opfermann KJ, Keane TE. The multi-disciplinary management of high-risk prostate cancer. Urologic Oncology. 30: 3-15. PMID 19945310 DOI: 10.1016/j.urolonc.2009.09.002  1
2012 Fowler E, Woolworth J, Shao Y, Sobolesky P, Keane T, Wolff D, Watson D, Moussa O. Abstract 2111: Characterization of current and novel biomarkers of bladder cancer Cancer Research. 72: 2111-2111. DOI: 10.1158/1538-7445.Am2012-2111  0.01
2011 Deem S, Keane T, Bhavsar R, El-Zawahary A, Savage S. Contemporary diagnosis and management of squamous cell carcinoma (SCC) of the penis. Bju International. 108: 1378-92. PMID 22023060 DOI: 10.1111/j.1464-410X.2011.10647.x  0.01
2011 Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, Zhang Y, Goyal P, Keane TM, Jones S, Hirst M, Lorincz MC, Mager DL. Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms Plos Genetics. 7. PMID 21980304 DOI: 10.1371/journal.pgen.1002301  1
2011 Yalcin B, Wong K, Agam A, Goodson M, Keane TM, Gan X, Nellåker C, Goodstadt L, Nicod J, Bhomra A, Hernandez-Pliego P, Whitley H, Cleak J, Dutton R, Janowitz D, et al. Sequence-based characterization of structural variation in the mouse genome. Nature. 477: 326-9. PMID 21921916 DOI: 10.1038/Nature10432  1
2011 Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, NellÃ¥ker C, Whitley H, Cleak J, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 477: 289-94. PMID 21921910 DOI: 10.1038/Nature10413  1
2011 Rieter WJ, Keane TE, Ahlman MA, Ellis CT, Spicer KM, Gordon LL. Diagnostic performance of In-111 capromab pendetide SPECT/CT in localized and metastatic prostate cancer. Clinical Nuclear Medicine. 36: 872-8. PMID 21892036 DOI: 10.1097/RLU.0b013e318219ae29  0.01
2011 Rim SH, Hall IJ, Fairweather ME, Fedorenko CR, Ekwueme DU, Smith JL, Thompson IM, Keane TE, Penson DF, Moinpour CM, Zeliadt SB, Ramsey SD. Considering racial and ethnic preferences in communication and interactions among the patient, family member, and physician following diagnosis of localized prostate cancer: study of a US population. International Journal of General Medicine. 4: 481-6. PMID 21760749 DOI: 10.2147/Ijgm.S19609  0.01
2011 Petty NK, Feltwell T, Pickard D, Clare S, Toribio AL, Fookes M, Roberts K, Monson R, Nair S, Kingsley RA, Bulgin R, Wiles S, Goulding D, Keane T, Corton C, et al. Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. Plos Pathogens. 7: e1002018. PMID 21490962 DOI: 10.1371/Journal.Ppat.1002018  1
2011 McIntyre M, Weiss A, Wahlquist A, Keane T, Clarke H, Savage S. Penile cancer: an analysis of socioeconomic factors at a southeastern tertiary referral center. The Canadian Journal of Urology. 18: 5524-8. PMID 21333043  0.01
2011 Zeliadt SB, Penson DF, Moinpour CM, Blough DK, Fedorenko CR, Hall IJ, Smith JL, Ekwueme DU, Thompson IM, Keane TE, Ramsey SD. Provider and partner interactions in the treatment decision-making process for newly diagnosed localized prostate cancer. Bju International. 108: 851-6; discussion 85. PMID 21244609 DOI: 10.1111/J.1464-410X.2010.09945.X  1
2011 Van Poppel H, Da Pozzo L, Albrecht W, Matveev V, Bono A, Borkowski A, Colombel M, Klotz L, Skinner E, Keane T, Marreaud S, Collette S, Sylvester R. A prospective, randomised EORTC intergroup phase 3 study comparing the oncologic outcome of elective nephron-sparing surgery and radical nephrectomy for low-stage renal cell carcinoma. European Urology. 59: 543-52. PMID 21186077 DOI: 10.1016/j.eururo.2010.12.013  1
2011 Ramsey SD, Zeliadt SB, Fedorenko CR, Blough DK, Moinpour CM, Hall IJ, Smith JL, Ekwueme DU, Fairweather ME, Thompson IM, Keane TE, Penson DF. Patient preferences and urologist recommendations among local-stage prostate cancer patients who present for initial consultation and second opinions. World Journal of Urology. 29: 3-9. PMID 20959991 DOI: 10.1007/S00345-010-0602-Y  1
2011 Bagley BN, Maklakova V, Kendziorski C, Adams DJ, Collier LS, Marshall JG, Lester RA, Cancel MM, Bendzick LG, Keane T, Kogan SC, Sullivan R, Cormier R. Abstract A37: A dominantly acting allele of murine Mcm4 causes chromosome instability and promotes leukemiogenesis Cancer Research. 71. DOI: 10.1158/1538-7445.Fbcr11-A37  1
2010 Moses JI, Visscher C, Keane TC, Sperier A. On the abundance of non-cometary HCN on Jupiter. Faraday Discussions. 147: 103-36; discussion 2. PMID 21302544 DOI: 10.1039/C003954C  1
2010 Wong K, Keane TM, Stalker J, Adams DJ. Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly Genome Biology. 11. PMID 21194472 DOI: 10.1186/Gb-2010-11-12-R128  1
2010 Page AJ, Keane TM, Naughton TJ. Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. Journal of Parallel and Distributed Computing. 70: 758-766. PMID 20862190 DOI: 10.1016/j.jpdc.2010.03.011  1
2010 Joshi PC, Keane TC. Investigation of riboflavin sensitized degradation of purine and pyrimidine derivatives of DNA and RNA under UVA and UVB. Biochemical and Biophysical Research Communications. 400: 729-33. PMID 20816939 DOI: 10.1016/j.bbrc.2010.08.138  1
2010 Lawrence C, Siddiqi MF, Hamilton JN, Keane TE, Romagnuolo J, Hawes RH, Cotton PB. Chronic calcific pancreatitis: Combination ercp and extracorporeal shock wave lithotripsy for pancreatic duct stones Southern Medical Journal. 103: 505-508. PMID 20710131 DOI: 10.1097/SMJ.0b013e3181d993ef  1
2010 Zeliadt SB, Moinpour CM, Blough DK, Penson DF, Hall IJ, Smith JL, Ekwueme DU, Thompson IM, Keane TE, Ramsey SD. Preliminary treatment considerations among men with newly diagnosed prostate cancer. The American Journal of Managed Care. 16: e121-30. PMID 20455638  1
2010 El-Zawahry AM, Clarke HS, Eskridge MR, Rieter W, Onicescu G, Garrett-Mayer E, Gordon LL, Keane TE. Capromab pendetide scanning has a potential role in optimizing patient selection for salvage cryosurgical ablation of the prostate. Urology. 76: 1162-7. PMID 20434196 DOI: 10.1016/J.Urology.2010.01.082  0.01
2010 Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell B, Pain A, Berriman M, Newbold C, Llinás M. New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Molecular Microbiology. 76: 12-24. PMID 20141604 DOI: 10.1111/J.1365-2958.2009.07026.X  1
2010 Steward CA, Humphray S, Plumb B, Jones MC, Quail MA, Rice S, Cox T, Davies R, Bonfield J, Keane TM, Nefedov M, de Jong PJ, Lyons P, Wicker L, Todd J, et al. Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes. Genomics. 95: 105-10. PMID 19909804 DOI: 10.1016/J.Ygeno.2009.10.004  1
2009 Warimwe GM, Keane TM, Fegan G, Musyoki JN, Newton CR, Pain A, Berriman M, Marsh K, Bull PC. Plasmodium falciparum var gene expression is modified by host immunity. Proceedings of the National Academy of Sciences of the United States of America. 106: 21801-6. PMID 20018734 DOI: 10.1073/Pnas.0907590106  1
2009 Liu X, Cheng JC, Turner LS, Elojeimy S, Beckham TH, Bielawska A, Keane TE, Hannun YA, Norris JS. Acid ceramidase upregulation in prostate cancer: role in tumor development and implications for therapy. Expert Opinion On Therapeutic Targets. 13: 1449-58. PMID 19874262 DOI: 10.1517/14728220903357512  1
2009 Sudbery I, Stalker J, Simpson JT, Keane T, Rust AG, Hurles ME, Walter K, Lynch D, Teboul L, Brown SD, Li H, Ning Z, Nadeau JH, Croniger CM, Durbin R, et al. Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels. Genome Biology. 10: R112. PMID 19825173 DOI: 10.1186/Gb-2009-10-10-R112  1
2009 Croucher NJ, Fookes MC, Perkins TT, Turner DJ, Marguerat SB, Keane T, Quail MA, He M, Assefa S, Bähler J, Kingsley RA, Parkhill J, Bentley SD, Dougan G, Thomson NR. A simple method for directional transcriptome sequencing using Illumina technology. Nucleic Acids Research. 37: e148. PMID 19815668 DOI: 10.1093/Nar/Gkp811  1
2009 Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics (Oxford, England). 25: 1968-9. PMID 19497936 DOI: 10.1093/Bioinformatics/Btp347  1
2009 Ochanda F, Cho K, Andala D, Keane TC, Atkinson A, Jones WE. Synthesis and optical properties of co-doped ZnO submicrometer tubes from electrospun fiber templates. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 7547-52. PMID 19469558 DOI: 10.1021/la802753k  1
2009 Turner DJ, Keane TM, Sudbery I, Adams DJ. Next-generation sequencing of vertebrate experimental organisms. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 327-38. PMID 19452216 DOI: 10.1007/S00335-009-9187-4  1
2009 Mahdy AE, Cheng JC, Li J, Elojeimy S, Meacham WD, Turner LS, Bai A, Gault CR, McPherson AS, Garcia N, Beckham TH, Saad A, Bielawska A, Bielawski J, Hannun YA, ... Keane TE, et al. Acid ceramidase upregulation in prostate cancer cells confers resistance to radiation: AC inhibition, a potential radiosensitizer. Molecular Therapy : the Journal of the American Society of Gene Therapy. 17: 430-8. PMID 19107118 DOI: 10.1038/Mt.2008.281  1
2009 Parra G, Bradnam K, Ning Z, Keane T, Korf I. Assessing the gene space in draft genomes. Nucleic Acids Research. 37: 289-97. PMID 19042974 DOI: 10.1093/Nar/Gkn916  1
2009 Bong GW, Ritenour CW, Osunkoya AO, Smith MT, Keane TE. Evaluation of modern pathological criteria for positive margins in radical prostatectomy specimens and their use for predicting biochemical recurrence. Bju International. 103: 327-31. PMID 19007381 DOI: 10.1111/j.1464-410X.2008.08075.x  0.01
2008 Grossman HB, O'Donnell MA, Cookson MS, Greenberg RE, Keane TE. Bacillus calmette-guérin failures and beyond: contemporary management of non-muscle-invasive bladder cancer. Reviews in Urology. 10: 281-9. PMID 19145271  0.01
2008 Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, ... ... Keane T, et al. The genome of the simian and human malaria parasite Plasmodium knowlesi. Nature. 455: 799-803. PMID 18843368 DOI: 10.1038/Nature07306  1
2008 Yoost TR, Bong GW, Keane TE. Perineal prostatectomy in the age of minimally invasive surgery. The Journal of the Arkansas Medical Society. 105: 67-8. PMID 18828477  0.01
2008 Varela JC, Atkinson C, Woolson R, Keane TE, Tomlinson S. Upregulated expression of complement inhibitory proteins on bladder cancer cells and anti-MUC1 antibody immune selection. International Journal of Cancer. 123: 1357-63. PMID 18561323 DOI: 10.1002/Ijc.23676  0.01
2008 Bong GW, Clarke HS, Hancock WC, Keane TE. Serum testosterone recovery after cessation of long-term luteinizing hormone-releasing hormone agonist in patients with prostate cancer. Urology. 71: 1177-80. PMID 18279929 DOI: 10.1016/j.urology.2007.09.066  0.01
2008 Liu X, Elojeimy S, Turner LS, Mahdy AE, Zeidan YH, Bielawska A, Bielawski J, Dong JY, El-Zawahry AM, Guo GW, Hannun YA, Holman DH, Rubinchik S, Szulc Z, Keane TE, et al. Acid ceramidase inhibition: a novel target for cancer therapy. Frontiers in Bioscience : a Journal and Virtual Library. 13: 2293-8. PMID 17981711 DOI: 10.2741/2843  1
2008 Bullard RS, Gibson W, Bose SK, Belgrave JK, Eaddy AC, Wright CJ, Hazen-Martin DJ, Lage JM, Keane TE, Ganz TA, Donald CD. Functional analysis of the host defense peptide Human Beta Defensin-1: new insight into its potential role in cancer. Molecular Immunology. 45: 839-48. PMID 17868871 DOI: 10.1016/J.Molimm.2006.11.026  0.01
2008 Page AJ, Keane TM, Naughton TJ. Scheduling in a dynamic heterogeneous distributed system using estimation error Journal of Parallel and Distributed Computing. 68: 1452-1462. DOI: 10.1016/j.jpdc.2008.07.004  1
2007 Clarke HS, Eskridge MR, El-Zawahry AM, Keane TE. Salvage cryosurgical ablation of the prostate for local recurrence after radiation therapy: improved outcomes utilizing a capromab pendetide scan and biopsy algorithm. The Canadian Journal of Urology. 14: 24-7. PMID 18163941  0.01
2007 Ramirez ML, Keane TE, Evans CP. Managing prostate cancer: the role of hormone therapy. The Canadian Journal of Urology. 14: 10-8. PMID 18163939  1
2007 Bong GW, Keane TE. Salvage options for biochemical recurrence after primary therapy for prostate cancer. The Canadian Journal of Urology. 14: 2-9. PMID 18163938  1
2007 Savage SJ, Wingo MS, Hooper HB, Smith MT, Keane TE. Pathologically confirmed port site metastasis after laparoscopic radical prostatectomy: case report and literature review. Urology. 70: 1222.e9-11. PMID 18158058 DOI: 10.1016/j.urology.2007.09.004  0.01
2007 Cummings B, Keane T, Pintilie M, Warde P, Waldron J, Payne D, Liu FF, Bissett R, McLean M, Gullane P, O'Sullivan B. Five year results of a randomized trial comparing hyperfractionated to conventional radiotherapy over four weeks in locally advanced head and neck cancer. Radiotherapy and Oncology : Journal of the European Society For Therapeutic Radiology and Oncology. 85: 7-16. PMID 17920715 DOI: 10.1016/J.Radonc.2007.09.010  1
2007 Saad AF, Meacham WD, Bai A, Anelli V, Elojeimy S, Mahdy AE, Turner LS, Cheng J, Bielawska A, Bielawski J, Keane TE, Obeid LM, Hannun YA, Norris JS, Liu X. The functional effects of acid ceramidase overexpression in prostate cancer progression and resistance to chemotherapy. Cancer Biology & Therapy. 6: 1455-60. PMID 17881906 DOI: 10.4161/Cbt.6.9.4623  1
2007 Guerrero MA, Cross CA, Lin PH, Keane TE, Lumsden AB. Inferior vena cava reconstruction using fresh inferior vena cava allograft following caval resection for leiomyosarcoma: midterm results. Journal of Vascular Surgery. 46: 140-3. PMID 17606132 DOI: 10.1016/j.jvs.2007.02.043  1
2007 Keane TM, Naughton TJ, McInerney JO. MultiPhyl: A high-throughput phylogenomics webserver using distributed computing Nucleic Acids Research. 35: W33-W37. PMID 17553837 DOI: 10.1093/Nar/Gkm359  1
2007 Van Poppel H, Da Pozzo L, Albrecht W, Matveev V, Bono A, Borkowski A, Marechal JM, Klotz L, Skinner E, Keane T, Claessens I, Sylvester R, et al. A prospective randomized EORTC intergroup phase 3 study comparing the complications of elective nephron-sparing surgery and radical nephrectomy for low-stage renal cell carcinoma. European Urology. 51: 1606-15. PMID 17140723 DOI: 10.1016/j.eururo.2006.11.013  0.01
2006 Drake BF, Keane TE, Mosley CM, Adams SA, Elder KT, Modayil MV, Ureda JR, Hebert JR. Prostate cancer disparities in South Carolina: early detection, special programs, and descriptive epidemiology. Journal of the South Carolina Medical Association (1975). 102: 241-9. PMID 17319238  1
2006 Keane TE, Rosner IL, Wingo MS, McLeod DG. The emergence of radioimmunoscintigraphy for prostate cancer. Reviews in Urology. 8: S20-8. PMID 17021623  0.01
2006 Liu X, Zeidan YH, Elojeimy S, Holman DH, El-Zawahry AM, Guo GW, Bielawska A, Bielawski J, Szulc Z, Rubinchik S, Dong JY, Keane TE, Tavassoli M, Hannun YA, Norris JS. Involvement of sphingolipids in apoptin-induced cell killing. Molecular Therapy : the Journal of the American Society of Gene Therapy. 14: 627-36. PMID 16926120 DOI: 10.1016/J.Ymthe.2006.07.001  1
2006 Moussa O, Abol-Enein H, Bissada NK, Keane T, Ghoneim MA, Watson DK. Evaluation of survivin reverse transcriptase-polymerase chain reaction for noninvasive detection of bladder cancer. The Journal of Urology. 175: 2312-6. PMID 16697865 DOI: 10.1016/S0022-5347(06)00254-0  1
2006 Keane TM, Creevey CJ, Pentony MM, Naughton TJ, Mclnerney JO. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. Bmc Evolutionary Biology. 6: 29. PMID 16563161 DOI: 10.1186/1471-2148-6-29  1
2006 Page AJ, Coyle S, Keane TM, Naughton TJ, Markham C, Ward T. Distributed Monte Carlo simulation of light transportation in tissue 20th International Parallel and Distributed Processing Symposium, Ipdps 2006. 2006. DOI: 10.1109/IPDPS.2006.1639511  1
2006 Keane TM, Page AJ, Naughton TJ, Travers SAA, McInerney JO. Building large phylogenetic trees on coarse-grained parallel machines Algorithmica (New York). 45: 285-300. DOI: 10.1007/S00453-006-1215-0  1
2005 Keane TM, Naughton TJ. DSEARCH: Sensitive database searching using distributed computing Bioinformatics. 21: 1705-1706. PMID 15564297 DOI: 10.1093/bioinformatics/bti163  1
2005 Keane TM, Naughton TJ, Travers SAA, McInerney JO, McCormack GP. DPRml: Distributed phylogeny reconstruction by maximum likelihood Bioinformatics. 21: 969-974. PMID 15513992 DOI: 10.1093/Bioinformatics/Bti100  1
2005 Page AJ, Keane TM, Naughton TJ. Bioinformatics on a heterogeneous Java distributed system Proceedings - 19th Ieee International Parallel and Distributed Processing Symposium, Ipdps 2005. 2005. DOI: 10.1109/IPDPS.2005.127  1
2005 Keane TM, Page AJ, McInerney JO, Naughton TJ. A high-throughput bioinformatics distributed computing platform Proceedings - Ieee Symposium On Computer-Based Medical Systems. 377-382.  1
2004 Page A, Keane T, Naughton TJ. Adaptive scheduling across a distributed computation platform Proceedings - Ispdc 2004: Third International Symposium On Parallel and Distributed Computing/Heteropar '04: Third International Workshop On Algorithms, Models and Tools For Parallel Computing On Hete. 141-148. DOI: 10.1109/ISPDC.2004.8  1
2003 Keane T, Allen R, Naughton TJ, McInerney J, Waldron J. Distributed Java platform with programmable MIMD capabilities Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2604: 122-131.  1
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