Emily Jane McTavish - Publications

Ecology and Evolutionary Biology University of Kansas, Lawrence, KS, United States 
Computational biology, genomic evolution, phylogeography

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Sánchez-Reyes LL, Kandziora M, McTavish EJ. Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life. Bmc Bioinformatics. 22: 355. PMID 34187366 DOI: 10.1186/s12859-021-04274-6  0.399
2021 McTavish EJ, Sanchez Reyes LL, Holder MT. OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life. Systematic Biology. PMID 33970279 DOI: 10.1093/sysbio/syab033  0.768
2019 McTavish EJ. Linking Biodiversity Data Using Evolutionary History Biodiversity Information Science and Standards. 3. DOI: 10.3897/BISS.3.36207  0.47
2018 McTavish EJ, Holder M, Cranston K. Nurturing a sustainable Open Tree of Life Biodiversity Information Science and Standards. 2: e25727. DOI: 10.3897/biss.2.25727  0.766
2017 McTavish EJ, Drew BT, Redelings B, Cranston KA. How and Why to Build a Unified Tree of Life. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28980328 DOI: 10.1002/Bies.201700114  0.531
2017 McTavish EJ, Pettengill J, Davis S, Rand H, Strain E, Allard M, Timme RE. TreeToReads - a pipeline for simulating raw reads from phylogenies. Bmc Bioinformatics. 18: 178. PMID 28320310 DOI: 10.1186/S12859-017-1592-1  0.396
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.761
2015 McTavish EJ, Steel M, Holder MT. Twisted trees and inconsistency of tree estimation when gaps are treated as missing data - The impact of model mis-specification in distance corrections. Molecular Phylogenetics and Evolution. 93: 289-95. PMID 26256643 DOI: 10.1016/J.Ympev.2015.07.027  0.74
2015 McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, Rees JA, Smith SA. Phylesystem: a git-based data store for community-curated phylogenetic estimates. Bioinformatics (Oxford, England). PMID 25940563 DOI: 10.1093/Bioinformatics/Btv276  0.762
2015 McTavish EJ, Hillis DM. How do SNP ascertainment schemes and population demographics affect inferences about population history? Bmc Genomics. 16: 266. PMID 25887858 DOI: 10.1186/S12864-015-1469-5  0.658
2014 McTavish EJ, Hillis DM. A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle. The Journal of Heredity. PMID 24510946 DOI: 10.1093/Jhered/Esu001  0.644
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, ... ... McTavish EJ, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.664
2013 McTavish EJ, Decker JE, Schnabel RD, Taylor JF, Hillis DM. New World cattle show ancestry from multiple independent domestication events. Proceedings of the National Academy of Sciences of the United States of America. 110: E1398-406. PMID 23530234 DOI: 10.1073/Pnas.1303367110  0.649
2011 Brown JM, Savidge K, McTavish EJ. DIM SUM: demography and individual migration simulated using a Markov chain. Molecular Ecology Resources. 11: 358-63. PMID 21429144 DOI: 10.1111/J.1755-0998.2010.02925.X  0.478
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