| Year |
Citation |
Score |
| 2023 |
Farrell AA, Nesbø CL, Zhaxybayeva O. Early Divergence and Gene Exchange Highways in the Evolutionary History of Mesoaciditogales. Genome Biology and Evolution. 15. PMID 37616556 DOI: 10.1093/gbe/evad156 |
0.479 |
|
| 2023 |
Blum LN, Colman DR, Eloe-Fadrosh EA, Kellom M, Boyd ES, Zhaxybayeva O, Leavitt WD. Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH. Environmental Microbiology. PMID 37032561 DOI: 10.1111/1462-2920.16375 |
0.369 |
|
| 2023 |
Farrell AA, Zhaxybayeva O, Nesbø CL. Complete Genome Sequence of sp. Strain T3B (DSM 15011). Microbiology Resource Announcements. e0002223. PMID 36856423 DOI: 10.1128/mra.00022-23 |
0.354 |
|
| 2022 |
Kogay R, Koppenhöfer S, Beatty JT, Kuhn JH, Lang AS, Zhaxybayeva O. Formal recognition and classification of gene transfer agents as viriforms. Virus Evolution. 8: veac100. PMID 36381234 DOI: 10.1093/ve/veac100 |
0.379 |
|
| 2022 |
Kogay R, Zhaxybayeva O. Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents. Msystems. e0089222. PMID 36374047 DOI: 10.1128/msystems.00892-22 |
0.531 |
|
| 2021 |
Haverkamp THA, Lossouarn J, Zhaxybayeva O, Lyu J, Bienvenu N, Geslin C, Nesbø CL. Newly identified proviruses in Thermotogota suggest that viruses are the vehicles on the highways of interphylum gene sharing. Environmental Microbiology. PMID 34398506 DOI: 10.1111/1462-2920.15723 |
0.467 |
|
| 2021 |
Esterman ES, Wolf YI, Kogay R, Koonin EV, Zhaxybayeva O. Evolution of DNA packaging in gene transfer agents. Virus Evolution. 7: veab015. PMID 33732503 DOI: 10.1093/ve/veab015 |
0.379 |
|
| 2020 |
Kogay R, Wolf YI, Koonin EV, Zhaxybayeva O. Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents. Mbio. 11. PMID 32665274 DOI: 10.1128/Mbio.01206-20 |
0.505 |
|
| 2020 |
Chase WR, Zhaxybayeva O, Rocha J, Cosgrove DJ, Shapiro LR. Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution. The New Phytologist. PMID 31930503 DOI: 10.1111/Nph.16428 |
0.506 |
|
| 2019 |
Kogay R, Neely TB, Birnbaum DP, Hankel CR, Shakya M, Zhaxybayeva O. Machine-learning classification suggests that many alphaproteobacterial prophages may instead be gene transfer agents. Genome Biology and Evolution. PMID 31560374 DOI: 10.1093/Gbe/Evz206 |
0.601 |
|
| 2019 |
Bauer KM, Dicovitsky R, Pellegrini M, Zhaxybayeva O, Ragusa MJ. The structure of a highly conserved picocyanobacterial protein reveals a Tudor domain with an RNA binding function. The Journal of Biological Chemistry. PMID 31391250 DOI: 10.1074/Jbc.Ra119.007938 |
0.411 |
|
| 2018 |
Shapiro LR, Paulson JN, Arnold BJ, Scully ED, Zhaxybayeva O, Pierce NE, Rocha J, Klepac-Ceraj V, Holton K, Kolter R. An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila. Mbio. 9. PMID 30279283 DOI: 10.1128/Mbio.01307-18 |
0.367 |
|
| 2017 |
Shakya M, Soucy SM, Zhaxybayeva O. Insights into origin and evolution of α-proteobacterial gene transfer agents. Virus Evolution. 3: vex036. PMID 29250433 DOI: 10.1093/Ve/Vex036 |
0.534 |
|
| 2017 |
Pollo SMJ, Adebusuyi AA, Straub TJ, Foght JM, Zhaxybayeva O, Nesbø CL. Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C. Extremophiles : Life Under Extreme Conditions. PMID 28894932 DOI: 10.1007/S00792-017-0956-9 |
0.397 |
|
| 2017 |
Straub TJ, Zhaxybayeva O. A null model for microbial diversification. Proceedings of the National Academy of Sciences of the United States of America. PMID 28630293 DOI: 10.1073/Pnas.1619993114 |
0.436 |
|
| 2016 |
Hynes AP, Shakya M, Mercer RG, Grüll MP, Bown L, Davidson F, Steffen E, Matchem H, Peach ME, Berger T, Grebe K, Zhaxybayeva O, Lang AS. Functional and evolutionary characterization of a gene transfer agent's multi-locus "genome". Molecular Biology and Evolution. PMID 27343288 DOI: 10.1093/Molbev/Msw125 |
0.577 |
|
| 2016 |
Shapiro LR, Scully ED, Straub TJ, Park J, Stephenson AG, Beattie GA, Gleason ML, Kolter R, Coelho MC, De Moraes CM, Mescher MC, Zhaxybayeva O. Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila. Genome Biology and Evolution. 8: 649-664. PMID 26992913 DOI: 10.1093/Gbe/Evw016 |
0.541 |
|
| 2015 |
Pollo SM, Zhaxybayeva O, Nesbø CL. Insights into thermoadaptation and the evolution of mesophily from the bacterial phylum Thermotogae. Canadian Journal of Microbiology. 61: 655-70. PMID 26211682 DOI: 10.1139/Cjm-2015-0073 |
0.333 |
|
| 2015 |
Shapiro LR, Scully ED, Roberts D, Straub TJ, Geib SM, Park J, Stephenson AG, Salaau Rojas E, Liu Q, Beattie G, Gleason M, De Moraes CM, Mescher MC, Fleischer SG, Kolter R, ... ... Zhaxybayeva O, et al. Draft Genome Sequence of Erwinia tracheiphila, an Economically Important Bacterial Pathogen of Cucurbits. Genome Announcements. 3. PMID 26044415 DOI: 10.1128/Genomea.00482-15 |
0.453 |
|
| 2015 |
Lossouarn J, Nesbø CL, Mercier C, Zhaxybayeva O, Johnson MS, Charchuck R, Farasin J, Bienvenu N, Baudoux AC, Michoud G, Jebbar M, Geslin C. 'Ménage à trois': a selfish genetic element uses a virus to propagate within Thermotogales. Environmental Microbiology. PMID 25630351 DOI: 10.1111/1462-2920.12783 |
0.479 |
|
| 2015 |
Nesbø CL, S Swithers K, Dahle H, Haverkamp TH, Birkeland NK, Sokolova T, Kublanov I, Zhaxybayeva O. Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments. The Isme Journal. 9: 1532-42. PMID 25500512 DOI: 10.1038/Ismej.2014.238 |
0.37 |
|
| 2014 |
Whidden CE, DeZeeuw KG, Zorz JK, Joy AP, Barnett DA, Johnson MS, Zhaxybayeva O, Cockshutt AM. Quantitative and functional characterization of the hyper-conserved protein of Prochlorococcus and marine Synechococcus. Plos One. 9: e109327. PMID 25360678 DOI: 10.1371/Journal.Pone.0109327 |
0.425 |
|
| 2013 |
Zhaxybayeva O. Anciently duplicated genes reduce uncertainty in molecular clock estimates. Proceedings of the National Academy of Sciences of the United States of America. 110: 12168-9. PMID 23842092 DOI: 10.1073/Pnas.1310930110 |
0.457 |
|
| 2013 |
Zhaxybayeva O, Stepanauskas R, Mohan NR, Papke RT. Cell sorting analysis of geographically separated hypersaline environments. Extremophiles : Life Under Extreme Conditions. 17: 265-75. PMID 23358730 DOI: 10.1007/S00792-013-0514-Z |
0.327 |
|
| 2012 |
Zhaxybayeva O, Swithers KS, Foght J, Green AG, Bruce D, Detter C, Han S, Teshima H, Han J, Woyke T, Pitluck S, Nolan M, Ivanova N, Pati A, Land ML, et al. Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date. Genome Biology and Evolution. 4: 700-8. PMID 22798451 DOI: 10.1093/Gbe/Evs059 |
0.815 |
|
| 2012 |
Lang AS, Zhaxybayeva O, Beatty JT. Gene transfer agents: phage-like elements of genetic exchange. Nature Reviews. Microbiology. 10: 472-82. PMID 22683880 DOI: 10.1038/Nrmicro2802 |
0.574 |
|
| 2012 |
Mao F, Williams D, Zhaxybayeva O, Poptsova M, Lapierre P, Gogarten JP, Xu Y. Quartet decomposition server: a platform for analyzing phylogenetic trees. Bmc Bioinformatics. 13: 123. PMID 22676320 DOI: 10.1186/1471-2105-13-123 |
0.718 |
|
| 2011 |
Zhaxybayeva O, Doolittle WF. Lateral gene transfer. Current Biology : Cb. 21: R242-6. PMID 21481756 DOI: 10.1016/J.Cub.2011.01.045 |
0.645 |
|
| 2010 |
Doolittle WF, Zhaxybayeva O. Metagenomics and the units of biological organization Bioscience. 60: 102-112. DOI: 10.1525/Bio.2010.60.2.5 |
0.524 |
|
| 2009 |
Zhaxybayeva O, Doolittle WF, Papke RT, Gogarten JP. Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus. Genome Biology and Evolution. 1: 325-39. PMID 20333202 DOI: 10.1093/Gbe/Evp032 |
0.755 |
|
| 2009 |
Doolittle WF, Zhaxybayeva O. On the origin of prokaryotic species. Genome Research. 19: 744-56. PMID 19411599 DOI: 10.1101/Gr.086645.108 |
0.536 |
|
| 2009 |
Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbø CL, Doolittle WF, Gogarten JP, Noll KM. On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proceedings of the National Academy of Sciences of the United States of America. 106: 5865-70. PMID 19307556 DOI: 10.1073/Pnas.0901260106 |
0.788 |
|
| 2009 |
Zhaxybayeva O. Detection and quantitative assessment of horizontal gene transfer. Methods in Molecular Biology (Clifton, N.J.). 532: 195-213. PMID 19271186 DOI: 10.1007/978-1-60327-853-9_11 |
0.565 |
|
| 2009 |
Nesbø CL, Bapteste E, Curtis B, Dahle H, Lopez P, Macleod D, Dlutek M, Bowman S, Zhaxybayeva O, Birkeland NK, Doolittle WF. The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea. Journal of Bacteriology. 191: 1974-8. PMID 19124572 DOI: 10.1128/Jb.01448-08 |
0.721 |
|
| 2008 |
Hamel L, Nahar N, Poptsova MS, Zhaxybayeva O, Gogarten JP. Unsupervised learning in detection of gene transfer. Journal of Biomedicine & Biotechnology. 2008: 472719. PMID 18509479 DOI: 10.1155/2008/472719 |
0.758 |
|
| 2008 |
Sharma AK, Zhaxybayeva O, Papke RT, Doolittle WF. Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments. Environmental Microbiology. 10: 1039-56. PMID 18218036 DOI: 10.1111/J.1462-2920.2007.01525.X |
0.665 |
|
| 2008 |
Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF. Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments. Environmental Microbiology. 10: 1024-38. PMID 18190517 DOI: 10.1111/J.1462-2920.2007.01524.X |
0.754 |
|
| 2008 |
Gogarten JP, Fournier G, Zhaxybayeva O. Gene transfer and the reconstruction of life's early history from genomic data Space Science Reviews. 135: 115-131. DOI: 10.1007/978-0-387-77516-6_10 |
0.801 |
|
| 2007 |
Cuadros-Orellana S, Martin-Cuadrado AB, Legault B, D'Auria G, Zhaxybayeva O, Papke RT, Rodriguez-Valera F. Genomic plasticity in prokaryotes: the case of the square haloarchaeon. The Isme Journal. 1: 235-45. PMID 18043634 DOI: 10.1038/Ismej.2007.35 |
0.538 |
|
| 2007 |
Papke RT, Zhaxybayeva O, Feil EJ, Sommerfeld K, Muise D, Doolittle WF. Searching for species in haloarchaea. Proceedings of the National Academy of Sciences of the United States of America. 104: 14092-7. PMID 17715057 DOI: 10.1073/pnas.0706358104 |
0.584 |
|
| 2007 |
Doolittle WF, Zhaxybayeva O. Evolution: reducible complexity -- the case for bacterial flagella. Current Biology : Cb. 17: R510-2. PMID 17610831 DOI: 10.1016/J.Cub.2007.05.003 |
0.486 |
|
| 2007 |
Zhaxybayeva O, Gogarten JP, Doolittle WF. A hyperconserved protein in Prochlorococcus and marine Synechococcus. Fems Microbiology Letters. 274: 30-4. PMID 17573933 DOI: 10.1111/J.1574-6968.2007.00806.X |
0.736 |
|
| 2007 |
Zhaxybayeva O, Nesbø CL, Doolittle WF. Systematic overestimation of gene gain through false diagnosis of gene absence. Genome Biology. 8: 402. PMID 17328791 DOI: 10.1186/Gb-2007-8-2-402 |
0.657 |
|
| 2007 |
Hamel L, Nahar N, Poptsova MS, Zhaxybayeva O, Gogarten JP. Unsupervised learning in spectral genome analysis Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, Fbit 2007. 317-321. DOI: 10.1109/FBIT.2007.81 |
0.57 |
|
| 2006 |
Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Research. 16: 1099-108. PMID 16899658 DOI: 10.1101/Gr.5322306 |
0.791 |
|
| 2006 |
Nesbø CL, Dlutek M, Zhaxybayeva O, Doolittle WF. Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments. Applied and Environmental Microbiology. 72: 5061-8. PMID 16820506 DOI: 10.1128/Aem.00342-06 |
0.633 |
|
| 2005 |
Zhaxybayeva O, Lapierre P, Gogarten JP. Ancient gene duplications and the root(s) of the tree of life. Protoplasma. 227: 53-64. PMID 16389494 DOI: 10.1007/S00709-005-0135-1 |
0.734 |
|
| 2005 |
Morandi A, Zhaxybayeva O, Gogarten JP, Graf J. Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains. Journal of Bacteriology. 187: 6561-4. PMID 16159790 DOI: 10.1128/Jb.187.18.6561-6564.2005 |
0.651 |
|
| 2005 |
Hamel L, Zhaxybayeva O, Gogarten JP. PentaPlot: a software tool for the illustration of genome mosaicism. Bmc Bioinformatics. 6: 139. PMID 15938752 DOI: 10.1186/1471-2105-6-139 |
0.657 |
|
| 2005 |
Sollod BL, Wilson D, Zhaxybayeva O, Gogarten JP, Drinkwater R, King GF. Were arachnids the first to use combinatorial peptide libraries? Peptides. 26: 131-9. PMID 15626513 DOI: 10.1016/J.Peptides.2004.07.016 |
0.575 |
|
| 2004 |
Zhaxybayeva O, Lapierre P, Gogarten JP. Genome mosaicism and organismal lineages. Trends in Genetics : Tig. 20: 254-60. PMID 15109780 DOI: 10.1016/J.Tig.2004.03.009 |
0.758 |
|
| 2004 |
Zhaxybayeva O, Gogarten JP. Cladogenesis, coalescence and the evolution of the three domains of life. Trends in Genetics : Tig. 20: 182-7. PMID 15041172 DOI: 10.1016/J.Tig.2004.02.004 |
0.653 |
|
| 2004 |
Zhaxybayeva O, Hamel L, Raymond J, Gogarten JP. Visualization of the phylogenetic content of five genomes using dekapentagonal maps. Genome Biology. 5: R20. PMID 15003123 DOI: 10.1186/Gb-2004-5-3-R20 |
0.734 |
|
| 2003 |
Zhaxybayeva O, Gogarten JP. Spliceosomal introns: new insights into their evolution. Current Biology : Cb. 13: R764-6. PMID 14521854 DOI: 10.1016/J.Cub.2003.09.017 |
0.649 |
|
| 2003 |
Zhaxybayeva O, Gogarten JP. An improved probability mapping approach to assess genome mosaicism. Bmc Genomics. 4: 37. PMID 12974984 DOI: 10.1186/1471-2164-4-37 |
0.694 |
|
| 2003 |
Raymond J, Zhaxybayeva O, Gogarten JP, Blankenship RE. Evolution of photosynthetic prokaryotes: a maximum-likelihood mapping approach. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 223-30. PMID 12594930 DOI: 10.1098/Rstb.2002.1181 |
0.766 |
|
| 2002 |
Raymond J, Zhaxybayeva O, Gogarten JP, Gerdes SY, Blankenship RE. Whole-genome analysis of photosynthetic prokaryotes. Science (New York, N.Y.). 298: 1616-20. PMID 12446909 DOI: 10.1126/Science.1075558 |
0.763 |
|
| 2002 |
Gogarten JP, Senejani AG, Zhaxybayeva O, Olendzenski L, Hilario E. Inteins: structure, function, and evolution. Annual Review of Microbiology. 56: 263-87. PMID 12142479 DOI: 10.1146/Annurev.Micro.56.012302.160741 |
0.621 |
|
| 2002 |
Zhaxybayeva O, Gogarten JP. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. Bmc Genomics. 3: 4. PMID 11918828 DOI: 10.1186/1471-2164-3-4 |
0.758 |
|
| 2002 |
Zhaxybayeva O, Gogarten JP. Boostrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses Bmc Genomics. 3. DOI: 10.1186/1471-2164-3-4 |
0.598 |
|
| 2000 |
Olendzenski L, Liu L, Zhaxybayeva O, Murphey R, Shin DG, Gogarten JP. Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches. Journal of Molecular Evolution. 51: 587-99. PMID 11116332 DOI: 10.1007/s002390010122 |
0.719 |
|
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