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David Smith - Publications

Affiliations: 
Botany University of British Columbia, Vancouver, Vancouver, BC, Canada 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Smith DR. Common Repeat Elements in the Mitochondrial and Plastid Genomes of Green Algae. Frontiers in Genetics. 11: 465. PMID 32477407 DOI: 10.3389/fgene.2020.00465  0.324
2020 Keeling PJ, Boscaro V, Bardell F, Burki F, Cho A, Cooney EC, del Campo J, Fast NM, Fiorito R, Gavelis GS, Gawryluk RMR, George EE, Gomm-Kolisko RN, Grisdale CJ, Heger T, ... ... Smith DR, et al. A letter to Denis Lynn Aquatic Ecosystem Health & Management. 23: 17-18. DOI: 10.1080/14634988.2020.1717827  0.521
2019 Zhang X, Bauman N, Brown R, Richardson TH, Akella S, Hann E, Morey R, Smith DR. The mitochondrial and chloroplast genomes of the green alga Haematococcus are made up of nearly identical repetitive sequences. Current Biology : Cb. 29: R736-R737. PMID 31386847 DOI: 10.1016/J.Cub.2019.06.040  0.317
2019 Grisdale CJ, Smith DR, Archibald JM. Relative mutation rates in nucleomorph-bearing algae. Genome Biology and Evolution. PMID 30859201 DOI: 10.1093/Gbe/Evz056  0.597
2016 Nanda VGY, Peng W, Hwu P, Davies MA, Ciliberto G, Fattore L, Malpicci D, Aurisicchio L, Ascierto PA, Croce CM, Mancini R, Spranger S, Gajewski TF, Wang Y, Ferrone S, ... ... Smith DC, et al. Melanoma and Immunotherapy Bridge 2015 : Naples, Italy. 1-5 December 2015 Journal of Translational Medicine. 14: 65-65. PMID 27461275 DOI: 10.1186/S12967-016-0791-2  0.548
2016 Smith DR, Keeling PJ. Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits. Annual Review of Microbiology. PMID 27359218 DOI: 10.1146/Annurev-Micro-102215-095448  0.475
2016 Tian Y, Smith DR. Recovering complete mitochondrial genome sequences from RNA-Seq: a case study of Polytomella non-photosynthetic green algae. Molecular Phylogenetics and Evolution. PMID 26860338 DOI: 10.1016/j.ympev.2016.01.017  0.346
2015 Smith DR. The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs? Briefings in Functional Genomics. PMID 26117139 DOI: 10.1093/bfgp/elv027  0.3
2015 Smith DR, Keeling PJ. Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes. Proceedings of the National Academy of Sciences of the United States of America. PMID 25814499 DOI: 10.1073/Pnas.1422049112  0.573
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, ... ... Smith DR, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/Journal.Pbio.1001889  0.714
2014 Smith DR, Lee RW. A plastid without a genome: evidence from the nonphotosynthetic green algal genus Polytomella. Plant Physiology. 164: 1812-9. PMID 24563281 DOI: 10.1104/Pp.113.233718  0.606
2013 Smith DR, Hua J, Archibald JM, Lee RW. Palindromic genes in the linear mitochondrial genome of the nonphotosynthetic green alga Polytomella magna. Genome Biology and Evolution. 5: 1661-7. PMID 23940100 DOI: 10.1093/Gbe/Evt122  0.695
2013 Smith DR, Keeling PJ. Gene conversion shapes linear mitochondrial genome architecture. Genome Biology and Evolution. 5: 905-12. PMID 23572386 DOI: 10.1093/Gbe/Evt059  0.511
2013 Smith DR, Hamaji T, Olson BJ, Durand PM, Ferris P, Michod RE, Featherston J, Nozaki H, Keeling PJ. Organelle genome complexity scales positively with organism size in volvocine green algae. Molecular Biology and Evolution. 30: 793-7. PMID 23300255 DOI: 10.1093/Molbev/Mst002  0.531
2013 Pombert JF, Xu J, Smith DR, Heiman D, Young S, Cuomo CA, Weiss LM, Keeling PJ. Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi. Eukaryotic Cell. 12: 503-11. PMID 23291622 DOI: 10.1128/Ec.00312-12  0.515
2012 Smith DR, Hua J, Lee RW, Keeling PJ. Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture. Molecular Phylogenetics and Evolution. 65: 339-44. PMID 22760027 DOI: 10.1016/J.Ympev.2012.06.017  0.639
2012 Smith DR, Keeling PJ. Twenty-fold difference in evolutionary rates between the mitochondrial and plastid genomes of species with secondary red plastids. The Journal of Eukaryotic Microbiology. 59: 181-4. PMID 22236077 DOI: 10.1111/J.1550-7408.2011.00601.X  0.569
2012 Smith DR, Kayal E, Yanagihara AA, Collins AG, Pirro S, Keeling PJ. First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biology and Evolution. 4: 52-8. PMID 22117085 DOI: 10.1093/Gbe/Evr127  0.556
2012 Hua J, Smith DR, Borza T, Lee RW. Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas. Protist. 163: 105-15. PMID 21621456 DOI: 10.1016/J.Protis.2011.04.003  0.55
2011 Smith DR, Burki F, Yamada T, Grimwood J, Grigoriev IV, Van Etten JL, Keeling PJ. The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. Plos One. 6: e23624. PMID 21887287 DOI: 10.1371/Journal.Pone.0023624  0.559
2011 Smith DR, Lee RW. Nucleotide diversity of the colorless green alga Polytomella parva (Chlorophyceae, Chlorophyta): high for the mitochondrial telomeres, surprisingly low everywhere else. The Journal of Eukaryotic Microbiology. 58: 471-3. PMID 21762422 DOI: 10.1111/J.1550-7408.2011.00569.X  0.596
2011 Smith DR, Crosby K, Lee RW. Correlation between nuclear plastid DNA abundance and plastid number supports the limited transfer window hypothesis. Genome Biology and Evolution. 3: 365-71. PMID 21292629 DOI: 10.1093/Gbe/Evr001  0.589
2010 Smith DR, Hua J, Lee RW. Evolution of linear mitochondrial DNA in three known lineages of Polytomella. Current Genetics. 56: 427-38. PMID 20574726 DOI: 10.1007/S00294-010-0311-5  0.586
2010 Smith DR, Lee RW, Cushman JC, Magnuson JK, Tran D, Polle JE. The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA. Bmc Plant Biology. 10: 83. PMID 20459666 DOI: 10.1186/1471-2229-10-83  0.576
2010 Smith DR, Lee RW. Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Molecular Biology and Evolution. 27: 2244-56. PMID 20430860 DOI: 10.1093/Molbev/Msq110  0.585
2009 Smith DR, Lee RW. Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis. Bmc Evolutionary Biology. 9: 120. PMID 19473533 DOI: 10.1186/1471-2148-9-120  0.59
2009 Smith DR, Lee RW. The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA. Bmc Genomics. 10: 132. PMID 19323823 DOI: 10.1186/1471-2164-10-132  0.583
2008 Smith DR, Lee RW. Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture. Bmc Evolutionary Biology. 8: 156. PMID 18495022 DOI: 10.1186/1471-2148-8-156  0.612
2008 Smith DR, Lee RW. Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content. Molecular Biology and Evolution. 25: 487-96. PMID 18222946 DOI: 10.1093/Molbev/Msm245  0.59
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