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Shawn W. Polson, Ph.D. - Publications

Affiliations: 
2007 Medical University of South Carolina, Charleston, SC, United States 
Area:
Microbiology Biology, Oceanography Biology, Molecular Biology
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Harrigan WL, Ferrell BD, Wommack KE, Polson SW, Schreiber ZD, Belcaid M. Improvements in viral gene annotation using large language models and soft alignments. Bmc Bioinformatics. 25: 165. PMID 38664627 DOI: 10.1186/s12859-024-05779-6  0.781
2023 Wu LY, Piedade GJ, Moore RM, Harrison AO, Martins AM, Bidle KD, Polson SW, Sakowski EG, Nissimov JI, Dums JT, Ferrell BD, Wommack KE. Ubiquitous, B-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean. Isme Communications. 3: 108. PMID 37789093 DOI: 10.1038/s43705-023-00306-9  0.779
2023 Joglekar P, Ferrell BD, Jarvis T, Haramoto K, Place N, Dums JT, Polson SW, Wommack KE, Fuhrmann JJ. Spontaneously Produced Lysogenic Phages Are an Important Component of the Soybean Mobilome. Mbio. e0029523. PMID 37017542 DOI: 10.1128/mbio.00295-23  0.754
2022 Keown RA, Dums JT, Brumm PJ, MacDonald J, Mead DA, Ferrell BD, Moore RM, Harrison AO, Polson SW, Wommack KE. Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes. Frontiers in Microbiology. 13: 858366. PMID 35531281 DOI: 10.3389/fmicb.2022.858366  0.751
2021 DeLong JP, Al-Sammak MA, Al-Ameeli ZT, Dunigan DD, Edwards KF, Fuhrmann JJ, Gleghorn JP, Li H, Haramoto K, Harrison AO, Marston MF, Moore RM, Polson SW, Ferrell BD, Salsbery ME, et al. Towards an integrative view of virus phenotypes. Nature Reviews. Microbiology. PMID 34522049 DOI: 10.1038/s41579-021-00612-w  0.767
2020 Sakowski EG, Wommack KE, Polson SW. Oyster Calcifying Fluid Harbors Persistent and Dynamic Autochthonous Bacterial Populations That May Aid in Shell Formation. Marine Ecology Progress Series. 653: 57-75. PMID 33424068 DOI: 10.3354/meps13487  0.721
2020 Dragon JA, Gates C, Sui SH, Hutchinson JN, Karuturi RKM, Kucukural A, Polson S, Riva A, Settles ML, Thimmapuram J, Levine SS. Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities. Journal of Biomolecular Techniques : Jbt. PMID 32382253 DOI: 10.7171/Jbt.20-3102-005  0.306
2020 Moore RM, Harrison AO, McAllister SM, Polson SW, Wommack KE. Iroki: automatic customization and visualization of phylogenetic trees. Peerj. 8: e8584. PMID 32149022 DOI: 10.7717/Peerj.8584  0.748
2020 Joglekar P, Mesa CP, Richards VA, Polson SW, Wommack KE, Fuhrmann JJ. Polyphasic analysis reveals correlation between phenotypic and genotypic analysis in soybean bradyrhizobia (Bradyrhizobium spp.). Systematic and Applied Microbiology. 126073. PMID 32139173 DOI: 10.1016/J.Syapm.2020.126073  0.776
2020 Marston MF, Polson SW. Whole-Genome Sequence of the Cyanobacterium sp. Strain WH 8101. Microbiology Resource Announcements. 9. PMID 32079636 DOI: 10.1128/MRA.01593-19  0.337
2019 Cusick KD, Polson SW, Duran G, Hill RT. Multiple Mega-plasmids Confer Extremely High Metal Tolerance in Strains. Applied and Environmental Microbiology. PMID 31757820 DOI: 10.1128/Aem.01831-19  0.336
2019 Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, Resende MLV. Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. Plos One. 14: e0215598. PMID 30998802 DOI: 10.1371/Journal.Pone.0215598  0.463
2019 Nasko DJ, Ferrell BD, Moore RM, Bhavsar JD, Polson SW, Wommack KE. CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes. Mbio. 10. PMID 30837341 DOI: 10.1128/Mbio.02651-18  0.807
2019 Harrison AO, Moore RM, Polson SW, Wommack KE. Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton. Frontiers in Microbiology. 10: 134. PMID 30804913 DOI: 10.3389/Fmicb.2019.00134  0.784
2018 Nasko DJ, Chopyk J, Sakowski EG, Ferrell BD, Polson SW, Wommack KE. Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton. Frontiers in Microbiology. 9: 3053. PMID 30619142 DOI: 10.3389/Fmicb.2018.03053  0.817
2018 Rupp O, MacDonald ML, Li S, Dhiman H, Polson S, Griep S, Heffner K, Hernandez I, Brinkrolf K, Jadhav V, Samoudi M, Hao H, Kingham B, Goesmann A, Betenbaugh MJ, et al. A reference genome of the Chinese hamster based on a hybrid assembly strategy. Biotechnology and Bioengineering. PMID 29704459 DOI: 10.1002/Bit.26722  0.421
2017 Marine RL, Nasko DJ, Wray J, Polson SW, Wommack KE. Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology. The Isme Journal. PMID 28731469 DOI: 10.1038/Ismej.2017.102  0.821
2017 Manching H, Sengupta S, Hopper KR, Polson SW, Ji Y, Wisser RJ. Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize. G3 (Bethesda, Md.). PMID 28526729 DOI: 10.1534/G3.117.042036  0.396
2016 Chen C, Huang H, Mazumder R, Natale DA, McGarvey PB, Zhang J, Polson SW, Wang Y, Wu CH. Computational clustering for viral reference proteomes. Bioinformatics (Oxford, England). PMID 27153712 DOI: 10.1093/Bioinformatics/Btw110  0.455
2015 Bishnoi U, Polson SW, Sherrier DJ, Bais HP. Draft Genome Sequence of a Natural Root Isolate, Bacillus subtilis UD1022, a Potential Plant Growth-Promoting Biocontrol Agent. Genome Announcements. 3. PMID 26159522 DOI: 10.1128/Genomea.00696-15  0.413
2015 Crowgey EL, Stabley DL, Chen C, Huang H, Robbins KM, Polson SW, Sol-Church K, Wu CH. An integrated approach for analyzing clinical genomic variant data from next-generation sequencing. Journal of Biomolecular Techniques : Jbt. 26: 19-28. PMID 25649353 DOI: 10.7171/Jbt.15-2601-002  0.389
2014 Manthey AL, Terrell AM, Lachke SA, Polson SW, Duncan MK. Development of novel filtering criteria to analyze RNA-sequencing data obtained from the murine ocular lens during embryogenesis. Genomics Data. 2: 369-374. PMID 25478318 DOI: 10.1016/J.Gdata.2014.10.015  0.346
2014 Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE. Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses. Proceedings of the National Academy of Sciences of the United States of America. 111: 15786-91. PMID 25313075 DOI: 10.1073/pnas.1401322111  0.783
2014 Wyffels J, King BL, Vincent J, Chen C, Wu CH, Polson SW. SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes. F1000research. 3: 191. PMID 25309735 DOI: 10.12688/F1000Research.4996.1  0.374
2014 Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC. Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum. Genome Announcements. 2. PMID 24699952 DOI: 10.1128/Genomea.00226-14  0.766
2014 Kalburge SS, Polson SW, Boyd Crotty K, Katz L, Turnsek M, Tarr CL, Martinez-Urtaza J, Boyd EF. Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493. Genome Announcements. 2. PMID 24625868 DOI: 10.1128/Genomea.00159-14  0.38
2014 Marine R, McCarren C, Vorrasane V, Nasko D, Crowgey E, Polson SW, Wommack KE. Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome. Microbiome. 2: 3. PMID 24475755 DOI: 10.1186/2049-2618-2-3  0.801
2014 Schmidt HF, Sakowski EG, Williamson SJ, Polson SW, Wommack KE. Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton. The Isme Journal. 8: 103-14. PMID 23985748 DOI: 10.1038/Ismej.2013.124  0.782
2013 Campbell BJ, Polson SW, Zeigler Allen L, Williamson SJ, Lee CK, Wommack KE, Cary SC. Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities. Frontiers in Microbiology. 4: 182. PMID 23898323 DOI: 10.3389/Fmicb.2013.00182  0.731
2013 Srinivasiah S, Lovett J, Polson S, Bhavsar J, Ghosh D, Roy K, Fuhrmann JJ, Radosevich M, Wommack KE. Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA. Applied and Environmental Microbiology. 79: 5450-7. PMID 23793630 DOI: 10.1128/Aem.00268-13  0.784
2012 Wommack KE, Bhavsar J, Polson SW, Chen J, Dumas M, Srinivasiah S, Furman M, Jamindar S, Nasko DJ. VIROME: a standard operating procedure for analysis of viral metagenome sequences. Standards in Genomic Sciences. 6: 427-39. PMID 23407591 DOI: 10.4056/Sigs.2945050  0.791
2012 Jamindar S, Polson SW, Srinivasiah S, Waidner L, Wommack KE. Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome size. Applied and Environmental Microbiology. 78: 8773-83. PMID 23064328 DOI: 10.1128/Aem.02432-12  0.785
2012 Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC. Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing. Plos One. 7: e44224. PMID 22970184 DOI: 10.1371/Journal.Pone.0044224  0.764
2012 Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH. Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees. Database : the Journal of Biological Databases and Curation. 2012: bar064. PMID 22434832 DOI: 10.1093/Database/Bar064  0.418
2011 Dumas MD, Polson SW, Ritter D, Ravel J, Gelb J, Morgan R, Wommack KE. Impacts of poultry house environment on poultry litter bacterial community composition. Plos One. 6: e24785. PMID 21949751 DOI: 10.1371/Journal.Pone.0024785  0.759
2011 Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE. Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Applied and Environmental Microbiology. 77: 8071-9. PMID 21948828 DOI: 10.1128/Aem.05610-11  0.787
2011 Polson SW, Wilhelm SW, Wommack KE. Unraveling the viral tapestry (from inside the capsid out). The Isme Journal. 5: 165-8. PMID 20555364 DOI: 10.1038/Ismej.2010.81  0.793
2011 Polson SW, Wilhelm SW, Wommack KE. Erratum: Unraveling the viral tapestry (from inside the capsid out) The Isme Journal. 5: 366-366. DOI: 10.1038/Ismej.2010.122  0.712
2011 Williamson KE, Kan J, Polson SW, Williamson SJ. Optimizing the indirect extraction of prokaryotic DNA from soils Soil Biology and Biochemistry. 43: 736-748. DOI: 10.1016/J.Soilbio.2010.04.017  0.381
2011 Wommack KE, Srinivasiah S, Liles MR, Bhavsar J, Bench S, Williamson KE, Polson SW. Metagenomic Contrasts of Viruses in Soil and Aquatic Environments Handbook of Molecular Microbial Ecology Ii: Metagenomics in Different Habitats. 25-36. DOI: 10.1002/9781118010549.ch4  0.719
2010 Campbell BJ, Polson SW, Hanson TE, Mack MC, Schuur EA. The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environmental Microbiology. 12: 1842-54. PMID 20236166 DOI: 10.1111/J.1462-2920.2010.02189.X  0.336
2010 Schoenfeld T, Liles M, Wommack KE, Polson SW, Godiska R, Mead D. Functional viral metagenomics and the next generation of molecular tools. Trends in Microbiology. 18: 20-9. PMID 19896852 DOI: 10.1016/J.Tim.2009.10.001  0.769
2006 Cervino JM, Winiarski-Cervino K, Polson SW, Goreau T, Smith GW. Identification of bacteria associated with a disease affecting the marine sponge Ianthella basta in New Britain, Papua New Guinea Marine Ecology Progress Series. 324: 139-150. DOI: 10.3354/Meps324139  0.319
2003 Denner EB, Smith GW, Busse HJ, Schumann P, Narzt T, Polson SW, Lubitz W, Richardson LL. Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian corals. International Journal of Systematic and Evolutionary Microbiology. 53: 1115-22. PMID 12892136 DOI: 10.1099/Ijs.0.02359-0  0.324
2002 Bagwell CE, Rocque JR, Smith GW, Polson SW, Friez MJ, Longshore JW, Lovell CR. Molecular diversity of diazotrophs in oligotrophic tropical seagrass bed communities. Fems Microbiology Ecology. 39: 113-9. PMID 19709190 DOI: 10.1111/J.1574-6941.2002.Tb00912.X  0.378
2001 Ritchie KB, Polson SW, Smith GW. Microbial disease causation in marine invertebrates: Problems, practices, and future prospects Hydrobiologia. 460: 131-139. DOI: 10.1023/A:1013181718805  0.332
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