Mark Beaumont, PhD - Publications

Biology University Bristol 
Mathematical Genetics

80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.


Year Citation  Score
2015 North TL, Beaumont MA. Complex trait architecture: the pleiotropic model revisited. Scientific Reports. 5: 9351. PMID 25792462 DOI: 10.1038/srep09351  1
2015 Arenas M, Lopes JS, Beaumont MA, Posada D. CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation. Molecular Biology and Evolution. 32: 1109-12. PMID 25577191 DOI: 10.1093/molbev/msu411  1
2015 Beaumont M. Theoretical outlook Population Genetics For Animal Conservation. 345-373. DOI: 10.1017/CBO9780511626920.016  1
2015 van der Vaart E, Beaumont MA, Johnston ASA, Sibly RM. Calibration and evaluation of individual-based models using Approximate Bayesian Computation Ecological Modelling. 312: 182-190. DOI: 10.1016/j.ecolmodel.2015.05.020  1
2014 Vitalis R, Gautier M, Dawson KJ, Beaumont MA. Detecting and measuring selection from gene frequency data. Genetics. 196: 799-817. PMID 24361938 DOI: 10.1534/genetics.113.152991  1
2014 Lopes JS, Arenas M, Posada D, Beaumont MA. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation. Heredity. 112: 255-64. PMID 24149652 DOI: 10.1038/hdy.2013.101  1
2013 Razgour O, Juste J, Ibáñez C, Kiefer A, Rebelo H, Puechmaille SJ, Arlettaz R, Burke T, Dawson DA, Beaumont M, Jones G. The shaping of genetic variation in edge-of-range populations under past and future climate change. Ecology Letters. 16: 1258-66. PMID 23890483 DOI: 10.1111/ele.12158  1
2013 Aeschbacher S, Futschik A, Beaumont MA. Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. Molecular Ecology. 22: 987-1002. PMID 23301635 DOI: 10.1111/mec.12165  1
2012 Aeschbacher S, Beaumont MA, Futschik A. A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. 192: 1027-47. PMID 22960215 DOI: 10.1534/genetics.112.143164  1
2012 Nunes VL, Beaumont MA, Butlin RK, Paulo OS. Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan. Heredity. 109: 340-8. PMID 22892639 DOI: 10.1038/hdy.2012.48  1
2012 Sousa VC, Beaumont MA, Fernandes P, Coelho MM, Chikhi L. Population divergence with or without admixture: selecting models using an ABC approach. Heredity. 108: 521-30. PMID 22146980 DOI: 10.1038/hdy.2011.116  1
2012 Bouric G, Beaumont M. Therapeutic patient education suffering chronic obstructive pulmonary disease in respiratory rehabilitation | L'éducation thérapeutique du patient atteint de BPCO en réhabilitation respiratoire Kinesitherapie. 12: 13-19. DOI: 10.1016/S1779-0123(12)75250-6  0.01
2011 Nunes VL, Miraldo A, Beaumont MA, Butlin RK, Paulo OS. Association of Mc1r variants with ecologically relevant phenotypes in the European ocellated lizard, Lacerta lepida. Journal of Evolutionary Biology. 24: 2289-98. PMID 21812853 DOI: 10.1111/j.1420-9101.2011.02359.x  1
2011 Antao T, Beaumont MA. Mcheza: a workbench to detect selection using dominant markers. Bioinformatics (Oxford, England). 27: 1717-8. PMID 21505032 DOI: 10.1093/bioinformatics/btr253  1
2011 Nunes VL, Beaumont MA, Butlin RK, Paulo OS. Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient. Molecular Ecology. 20: 193-205. PMID 21091562 DOI: 10.1111/j.1365-294X.2010.04936.x  1
2011 Chiurugwi T, Beaumont MA, Wilkinson MJ, Battey NH. Adaptive divergence and speciation among sexual and pseudoviviparous populations of Festuca. Heredity. 106: 854-61. PMID 20959864 DOI: 10.1038/hdy.2010.128  1
2011 Palero F, Abelló P, Macpherson E, Beaumont M, Pascual M. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas) Biological Journal of the Linnean Society. 104: 407-418. DOI: 10.1111/j.1095-8312.2011.01728.x  1
2010 Estoup A, Baird SJ, Ray N, Currat M, Cornuet JM, Santos F, Beaumont MA, Excoffier L. Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular Ecology Resources. 10: 886-901. PMID 21565099 DOI: 10.1111/j.1755-0998.2010.02882.x  1
2010 Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont MA. The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics. 186: 983-95. PMID 20739713 DOI: 10.1534/genetics.110.118661  1
2010 Panchal M, Beaumont MA. Evaluating nested clade phylogeographic analysis under models of restricted gene flow. Systematic Biology. 59: 415-32. PMID 20547778 DOI: 10.1093/sysbio/syq022  1
2010 Bazin E, Dawson KJ, Beaumont MA. Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model. Genetics. 185: 587-602. PMID 20382835 DOI: 10.1534/genetics.109.112391  1
2010 Hoeck PE, Beaumont MA, James KE, Grant RB, Grant PR, Keller LF. Saving Darwin's muse: evolutionary genetics for the recovery of the Floreana mockingbird. Biology Letters. 6: 212-5. PMID 19923141 DOI: 10.1098/rsbl.2009.0778  1
2010 Lopes JS, Beaumont MA. ABC: a useful Bayesian tool for the analysis of population data. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 826-33. PMID 19879976 DOI: 10.1016/j.meegid.2009.10.010  1
2010 Guillemaud T, Beaumont MA, Ciosi M, Cornuet JM, Estoup A. Inferring introduction routes of invasive species using approximate Bayesian computation on microsatellite data. Heredity. 104: 88-99. PMID 19654609 DOI: 10.1038/hdy.2009.92  1
2010 Beaumont MA. Approximate Bayesian computation in evolution and ecology Annual Review of Ecology, Evolution, and Systematics. 41: 379-406. DOI: 10.1146/annurev-ecolsys-102209-144621  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x  1
2009 Palero F, Lopes J, Abelló P, Macpherson E, Pascual M, Beaumont MA. Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data. Bmc Evolutionary Biology. 9: 263. PMID 19900277 DOI: 10.1186/1471-2148-9-263  1
2009 Itan Y, Powell A, Beaumont MA, Burger J, Thomas MG. The origins of lactase persistence in Europe. Plos Computational Biology. 5: e1000491. PMID 19714206 DOI: 10.1371/journal.pcbi.1000491  1
2009 Lopes JS, Balding D, Beaumont MA. PopABC: a program to infer historical demographic parameters. Bioinformatics (Oxford, England). 25: 2747-9. PMID 19679678 DOI: 10.1093/bioinformatics/btp487  1
2009 Giovannini A, Zanghirati G, Beaumont MA, Chikhi L, Barbujani G. A novel parallel approach to the likelihood-based estimation of admixture in population genetics. Bioinformatics (Oxford, England). 25: 1440-1. PMID 19286832 DOI: 10.1093/bioinformatics/btp136  1
2009 Nielsen R, Beaumont MA. Statistical inferences in phylogeography. Molecular Ecology. 18: 1034-47. PMID 19207258 DOI: 10.1111/j.1365-294X.2008.04059.x  1
2009 Sousa VC, Fritz M, Beaumont MA, Chikhi L. Approximate bayesian computation without summary statistics: the case of admixture. Genetics. 181: 1507-19. PMID 19189952 DOI: 10.1534/genetics.108.098129  1
2009 Beaumont MA, Cornuet JM, Marin JM, Robert CP. Adaptive approximate Bayesian computation Biometrika. 96: 983-990. DOI: 10.1093/biomet/asp052  1
2008 Tallmon DA, Koyuk A, Luikart G, Beaumont MA. COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources. 8: 299-301. PMID 21585773 DOI: 10.1111/j.1471-8286.2007.01997.x  1
2008 Beaumont MA. Selection and sticklebacks. Molecular Ecology. 17: 3425-7. PMID 19160473 DOI: 10.1111/j.1365-294X.2008.03863.x  1
2008 Cornuet JM, Santos F, Beaumont MA, Robert CP, Marin JM, Balding DJ, Guillemaud T, Estoup A. Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics (Oxford, England). 24: 2713-9. PMID 18842597 DOI: 10.1093/bioinformatics/btn514  1
2008 Foll M, Beaumont MA, Gaggiotti O. An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure. Genetics. 179: 927-39. PMID 18505879 DOI: 10.1534/genetics.107.084541  1
2008 Beaumont MA, Panchal M. On the validity of nested clade phylogeographical analysis. Molecular Ecology. 17: 2563-5. PMID 18482264 DOI: 10.1111/j.1365-294X.2008.03786.x  1
2008 Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Reply to Garrigan and Hammer: Ancient lineages and assimilation [2] Proceedings of the National Academy of Sciences of the United States of America. 105: E4. DOI: 10.1073/pnas.0711261105  1
2008 Brotherton P, Endicott P, Beaumont M, Barnett R, Austin J, Cooper A, Sanchez JJ. Single primer extension (SPEX) amplification to accurately genotype highly damaged DNA templates Forensic Science International: Genetics Supplement Series. 1: 19-21. DOI: 10.1016/j.fsigss.2007.10.111  1
2008 Beaumont MA. Conservation Genetics Handbook of Statistical Genetics: Third Edition. 2: 1021-1066. DOI: 10.1002/9780470061619.ch30  1
2007 Fagundes NJ, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 17614-9. PMID 17978179 DOI: 10.1073/pnas.0708280104  1
2007 Brotherton P, Endicott P, Sanchez JJ, Beaumont M, Barnett R, Austin J, Cooper A. Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Research. 35: 5717-28. PMID 17715147 DOI: 10.1093/nar/gkm588  1
2007 Ciborowski KL, Consuegra S, García de Leániz C, Beaumont MA, Wang J, Jordan WC. Rare and fleeting: an example of interspecific recombination in animal mitochondrial DNA. Biology Letters. 3: 554-7. PMID 17650476 DOI: 10.1098/rsbl.2007.0290  1
2007 Panchal M, Beaumont MA. The automation and evaluation of nested clade phylogeographic analysis. Evolution; International Journal of Organic Evolution. 61: 1466-80. PMID 17542853 DOI: 10.1111/j.1558-5646.2007.00124.x  1
2007 Cornuet JM, Beaumont MA. A note on the accuracy of PAC-likelihood inference with microsatellite data. Theoretical Population Biology. 71: 12-9. PMID 16890970 DOI: 10.1016/j.tpb.2006.06.004  1
2007 Ciborowski KL, Consuegra S, García De Leániz C, Wang J, Beaumont MA, Jordan WC. Stocking may increase mitochondrial DNA diversity but fails to halt the decline of endangered Atlantic salmon populations Conservation Genetics. 8: 1355-1367. DOI: 10.1007/s10592-007-9286-2  1
2006 Kitchener AC, Beaumont MA, Richardson D. Geographical variation in the clouded leopard, Neofelis nebulosa, reveals two species. Current Biology : Cb. 16: 2377-83. PMID 17141621 DOI: 10.1016/j.cub.2006.10.066  1
2006 Cornuet JM, Beaumont MA, Estoup A, Solignac M. Inference on microsatellite mutation processes in the invasive mite, Varroa destructor, using reversible jump Markov chain Monte Carlo. Theoretical Population Biology. 69: 129-44. PMID 16257428 DOI: 10.1016/j.tpb.2005.07.005  1
2005 Beaumont MA. Adaptation and speciation: what can F(st) tell us? Trends in Ecology & Evolution. 20: 435-40. PMID 16701414 DOI: 10.1016/j.tree.2005.05.017  1
2005 Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 170: 409-17. PMID 15716508 DOI: 10.1534/genetics.104.034199  1
2004 Estoup A, Beaumont M, Sennedot F, Moritz C, Cornuet JM. Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus. Evolution; International Journal of Organic Evolution. 58: 2021-36. PMID 15521459  1
2004 Tallmon DA, Luikart G, Beaumont MA. Comparative evaluation of a new effective population size estimator based on approximate bayesian computation. Genetics. 167: 977-88. PMID 15238546 DOI: 10.1534/genetics.103.026146  1
2004 Beaumont MA, Rannala B. The Bayesian revolution in genetics. Nature Reviews. Genetics. 5: 251-61. PMID 15131649 DOI: 10.1038/nrg1318  1
2004 Beaumont MA. Recent developments in genetic data analysis: what can they tell us about human demographic history? Heredity. 92: 365-79. PMID 15039702 DOI: 10.1038/sj.hdy.6800447  1
2004 Beaumont MA, Balding DJ. Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology. 13: 969-80. PMID 15012769 DOI: 10.1111/j.1365-294X.2004.02125.x  1
2003 Vogl C, Das A, Beaumont M, Mohanty S, Stephan W. Population subdivision and molecular sequence variation: theory and analysis of Drosophila ananassae data. Genetics. 165: 1385-95. PMID 14668389  1
2003 Beaumont MA. Estimation of population growth or decline in genetically monitored populations. Genetics. 164: 1139-60. PMID 12871921  1
2003 Yang Z, Stephens D, Dawson KJ, Drummond A, Nicholls G, Griffiths RC, Wilkinson-Herbots HM, Beaumont MA, Baird SJE, Lascoux M, Leblois R, Estoup A, Nielsen R, Hey J, Stumpf MPH. Discussion on the paper by Wilson, Weale and Balding Journal of the Royal Statistical Society. Series a: Statistics in Society. 166: 188-201. DOI: 10.1111/1467-985X.00265  1
2002 Beaumont MA, Zhang W, Balding DJ. Approximate Bayesian computation in population genetics. Genetics. 162: 2025-35. PMID 12524368  1
2002 Storz JF, Beaumont MA, Alberts SC. Genetic evidence for long-term population decline in a savannah-dwelling primate: inferences from a hierarchical bayesian model. Molecular Biology and Evolution. 19: 1981-90. PMID 12411607  1
2002 Chikhi L, Nichols RA, Barbujani G, Beaumont MA. Y genetic data support the Neolithic demic diffusion model. Proceedings of the National Academy of Sciences of the United States of America. 99: 11008-13. PMID 12167671 DOI: 10.1073/pnas.162158799  1
2002 Storz JF, Beaumont MA. Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution; International Journal of Organic Evolution. 56: 154-66. PMID 11913661  1
2002 Berthier P, Beaumont MA, Cornuet JM, Luikart G. Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics. 160: 741-51. PMID 11861575  1
2002 Balding DJ, Carothers AD, Marchini JL, Cardon LR, Vetta A, Griffiths B, Weir BS, Hill WG, Goldstein D, Strimmer K, Myers S, Beaumont MA, Glasbey CA, Mayer CD, Richardson S, et al. Discussion on the meeting on 'statistical modelling and analysis of genetic data' Journal of the Royal Statistical Society. Series B: Statistical Methodology. 64: 737-775. DOI: 10.1111/1467-9868.00359  1
2001 Randi E, Pierpaoli M, Beaumont M, Ragni B, Sforzi A. Genetic identification of wild and domestic cats (Felis silvestris) and their hybrids using Bayesian clustering methods. Molecular Biology and Evolution. 18: 1679-93. PMID 11504848  1
2001 Chikhi L, Bruford MW, Beaumont MA. Estimation of admixture proportions: a likelihood-based approach using Markov chain Monte Carlo. Genetics. 158: 1347-62. PMID 11454781  1
2001 Keller LF, Jeffery KJ, Arcese P, Beaumont MA, Hochachka WM, Smith JN, Bruford MW. Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers. Proceedings. Biological Sciences / the Royal Society. 268: 1387-94. PMID 11429139 DOI: 10.1098/rspb.2001.1607  1
2001 Beaumont M, Barratt EM, Gottelli D, Kitchener AC, Daniels MJ, Pritchard JK, Bruford MW. Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology. 10: 319-36. PMID 11298948 DOI: 10.1046/j.1365-294X.2001.01196.x  1
2001 Daniels MJ, Beaumont MA, Johnson PJ, Balharry D, Macdonald DW, Barratt E. Ecology and genetics of wild-living cats in the north-east of Scotland and the implications for the conservation of the wildcat Journal of Applied Ecology. 38: 146-161. DOI: 10.1046/j.1365-2664.2001.00580.x  1
1999 Flint J, Bond J, Rees DC, Boyce AJ, Roberts-Thomson JM, Excoffier L, Clegg JB, Beaumont MA, Nichols RA, Harding RM. Minisatellite mutational processes reduce F(st) estimates. Human Genetics. 105: 567-76. PMID 10647891 DOI: 10.1007/s004399900185  1
1999 Beaumont MA. Detecting population expansion and decline using microsatellites. Genetics. 153: 2013-29. PMID 10581303  1
1999 Burland TM, Barratt EM, Beaumont MA, Racey PA. Population genetic structure and gene flow in a gleaning bat, Plecotus auritus Proceedings of the Royal Society B: Biological Sciences. 266: 975-980. DOI: 10.1098/rspb.1999.0732  1
1999 Ciofi C, Beaumont MA, Swingland IR, Bruford MW. Genetic divergence and units for conservation in the Komodo dragon Varanus komodoensis Proceedings of the Royal Society B: Biological Sciences. 266: 2269-2274.  1
1998 Coulson TN, Pemberton JM, Albon SD, Beaumont M, Marshall TC, Slate J, Guinness FE, Clutton-Brock TH. Microsatellites reveal heterosis in red deer. Proceedings. Biological Sciences / the Royal Society. 265: 489-95. PMID 9569667 DOI: 10.1098/rspb.1998.0321  1
1998 O'Ryan C, Harley EH, Bruford MW, Beaumont M, Wayne RK, Cherry MI. Microsatellite analysis of genetic diversity in fragmented South African buffalo populations Animal Conservation. 1: 85-94.  1
1996 Beaumont MA, Nichols RA. Evaluating loci for use in the genetic analysis of population structure Proceedings of the Royal Society B: Biological Sciences. 263: 1619-1626. DOI: 10.1098/rspb.1996.0237  1
1993 Beaumont MA. Evolution of optimal behaviour in networks of Boolean automata. Journal of Theoretical Biology. 165: 455-76. PMID 8114506 DOI: 10.1006/jtbi.1993.1201  1
1992 Butlin RK, Beaumont M, Hewitt GM. Selection for assortative mating between parapatric subspecies of grasshopper Animal Behaviour. 43: 1045-1047.  1
1988 Beaumont MA. Stabilizing selection and metabolism. Heredity. 61: 433-8. PMID 3230032  1
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