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Jianzhi Zhang - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Molecular and genomic evolution
Website:
http://www.umich.edu/~zhanglab/people.htm

232 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Sun M, Zhang J. Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells. Plos Genetics. 15: e1008389. PMID 31525198 DOI: 10.1371/journal.pgen.1008389  0.4
2019 Jiang D, Zhang J. Parallel transcriptomic changes in the origins of divergent monogamous vertebrates? Proceedings of the National Academy of Sciences of the United States of America. PMID 31431541 DOI: 10.1073/pnas.1910749116  0.36
2019 Ho WC, Zhang J. Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence. Molecular Biology and Evolution. PMID 31155654 DOI: 10.1093/molbev/msz073  1
2019 Zhang J, Liu L, Chen F. Production and characterization of exopolysaccharides from Chlorella zofingiensis and Chlorella vulgaris with anti-colorectal cancer activity. International Journal of Biological Macromolecules. PMID 31121230 DOI: 10.1016/j.ijbiomac.2019.05.117  0.48
2019 Li C, Zhang J. Stop-codon read-through arises largely from molecular errors and is generally nonadaptive. Plos Genetics. 15: e1008141. PMID 31120886 DOI: 10.1371/journal.pgen.1008141  1
2019 Liu H, Zhang J. Yeast Spontaneous Mutation Rate and Spectrum Vary with Environment. Current Biology : Cb. PMID 31056389 DOI: 10.1016/j.cub.2019.03.054  1
2019 He Y, Wang X, Wei H, Zhang J, Chen B, Chen F. Direct enzymatic ethanolysis of potential biomass for co-production of sustainable biodiesel and nutraceutical eicosapentaenoic acid. Biotechnology For Biofuels. 12: 78. PMID 30992715 DOI: 10.1186/s13068-019-1418-7  1
2019 Wei X, Zhang J. Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations. Molecular Biology and Evolution. PMID 30903691 DOI: 10.1093/molbev/msz035  1
2019 Xu C, Park JK, Zhang J. Evidence that alternative transcriptional initiation is largely nonadaptive. Plos Biology. 17: e3000197. PMID 30883542 DOI: 10.1371/journal.pbio.3000197  1
2019 Zhang J, Liu L, Ren Y, Chen F. Characterization of exopolysaccharides produced by microalgae with antitumor activity on human colon cancer cells. International Journal of Biological Macromolecules. PMID 30726750 DOI: 10.1016/j.ijbiomac.2019.02.009  0.48
2019 Wei X, Zhang J. Environment-dependent pleiotropic effects of mutations on the maximum growth rate r and carrying capacity K of population growth. Plos Biology. 17: e3000121. PMID 30682014 DOI: 10.1371/journal.pbio.3000121  1
2019 Ho WC, Zhang J. Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence. Molecular Biology and Evolution. PMID 30649427 DOI: 10.1093/molbev/msz002  1
2018 Liu H, Maclean CJ, Zhang J. Evolution of the yeast recombination landscape. Molecular Biology and Evolution. PMID 30535029 DOI: 10.1093/molbev/msy233  1
2018 Wei X, Zhang J. The optimal mating distance resulting from heterosis and genetic incompatibility. Science Advances. 4: eaau5518. PMID 30417098 DOI: 10.1126/sciadv.aau5518  1
2018 Pan B, Han H, Wu L, Xiong Y, Zhang J, Dong B, Yang Y, Chen J. MTBP promotes migration and invasion by regulation of ZEB2-mediated epithelial-mesenchymal transition in lung cancer cells. Oncotargets and Therapy. 11: 6741-6756. PMID 30349307 DOI: 10.2147/OTT.S167963  0.68
2018 Moyers BA, Zhang J. Toward reducing phylostratigraphic errors and biases. Genome Biology and Evolution. PMID 30060201 DOI: 10.1093/gbe/evy161  1
2018 Wei X, Zhang J. On the origin of compositional features of ribosomes. Genome Biology and Evolution. PMID 30059996 DOI: 10.1093/gbe/evy169  1
2018 Xu C, Zhang J. Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive. Cell Systems. PMID 29886108 DOI: 10.1016/j.cels.2018.05.007  0.32
2018 Vijay N, Park C, Oh J, Jin S, Kern E, Woo Kim H, Zhang J, Park JK. Population genomic analysis reveals contrasting demographic changes of two closely related dolphin species in the last glacial. Molecular Biology and Evolution. PMID 29846663 DOI: 10.1093/molbev/msy108  1
2018 Li C, Zhang J. Multi-environment fitness landscapes of a tRNA gene. Nature Ecology & Evolution. PMID 29686238 DOI: 10.1038/s41559-018-0549-8  1
2018 Zhang J. Neutral theory and phenotypic evolution. Molecular Biology and Evolution. PMID 29659993 DOI: 10.1093/molbev/msy065  0.01
2018 Ho WC, Zhang J. Publisher Correction: Evolutionary adaptations to new environments generally reverse plastic phenotypic changes. Nature Communications. 9: 833. PMID 29467475 DOI: 10.1038/s41467-018-03360-3  1
2018 Liu Z, Zhang J. Human C-to-U coding RNA editing is largely nonadaptive. Molecular Biology and Evolution. PMID 29385526 DOI: 10.1093/molbev/msy011  1
2018 Ho WC, Zhang J. Evolutionary adaptations to new environments generally reverse plastic phenotypic changes. Nature Communications. 9: 350. PMID 29367589 DOI: 10.1038/s41467-017-02724-5  1
2017 Liu Z, Zhang J. Most m6A RNA modifications in protein-coding regions are evolutionarily unconserved and likely nonfunctional. Molecular Biology and Evolution. PMID 29228327 DOI: 10.1093/molbev/msx320  1
2017 Wei X, Zhang J. Why phenotype robustness promotes phenotype evolvability. Genome Biology and Evolution. PMID 29228219 DOI: 10.1093/gbe/evx264  1
2017 Yang X, Xiao X, Liu D, Wu R, Wu C, Zhang J, Huang J, Liao B, He H. Optimization of Collagenase Production by Pseudoalteromonas sp. SJN2 and Application of Collagenases in the Preparation of Antioxidative Hydrolysates. Marine Drugs. 15. PMID 29207560 DOI: 10.3390/md15120377  0.72
2017 Wan L, Li B, Lei Y, Yan L, Ren X, Chen Y, Dai X, Jiang H, Zhang J, Guo W, Chen A, Liao B. Mutant Transcriptome Sequencing Provides Insights into Pod Development in Peanut (Arachis hypogaea L.). Frontiers in Plant Science. 8: 1900. PMID 29170673 DOI: 10.3389/fpls.2017.01900  0.72
2017 Zhang JB, Cao M, Chen J, Ye SR, Xie K, He X, Ma XL, Zhang J, Yie SM. Serum anti-TOPO48 autoantibody as a biomarker for early diagnosis and prognosis in patients with esophageal squamous cell carcinoma. Clinics and Research in Hepatology and Gastroenterology. PMID 29170084 DOI: 10.1016/j.clinre.2017.09.007  1
2017 Huang J, Wu R, Wu C, Liu D, Zhang J, Liao B, Lei M, Xiao X, Ma C, He H. New method of detecting hydrophobic interaction between C-terminal binding domain and biomacromolecules. Journal of Biotechnology. PMID 29162385 DOI: 10.1016/j.jbiotec.2017.11.009  0.72
2017 Fan Y, Zhang J, He X, Huang Y, Wu Q, Hao D. A Comparison of the Mini-Open Wiltse Approach with Pedicle Screw Fixation and the Percutaneous Pedicle Screw Fixation for Neurologically Intact Thoracolumbar Fractures. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 23: 5515-5521. PMID 29151568  1
2017 Ho WC, Ohya Y, Zhang J. Testing the neutral hypothesis of phenotypic evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087947 DOI: 10.1073/pnas.1710351114  1
2017 Zhang J, Fu Y, Han HH, Zang Y, Li J, He XP, Feringa BL, Tian H. Remote light-controlled intracellular target recognition by photochromic fluorescent glycoprobes. Nature Communications. 8: 987. PMID 29042558 DOI: 10.1038/s41467-017-01137-8  1
2017 Zhang J, Li X. Novel strategy for phenyllactic acid biosynthesis from phenylalanine by whole cell recombinant Escherichia coli coexpressing L-phenylalanine oxidase and L-lactate dehydrogenase. Biotechnology Letters. PMID 29038927 DOI: 10.1007/s10529-017-2456-5  0.96
2017 Zhang X, Zhang J, He X, Wang Y, Ma X, Yin D. Genome-Wide Association Study of Major Agronomic Traits Related to Domestication in Peanut. Frontiers in Plant Science. 8: 1611. PMID 29018458 DOI: 10.3389/fpls.2017.01611  1
2017 He X, Liu W, Wang Y, Zhang J, Liang B, Huang JH. Surgical Management and Outcome Experience of 53 Cerebellopontine Angle Meningiomas. Cureus. 9: e1538. PMID 28983447 DOI: 10.7759/cureus.1538  1
2017 Shan Y, Liang Z, Xing Q, Zhang T, Wang B, Tian S, Huang W, Zhang Y, Yao J, Zhu Y, Huang K, Liu Y, Wang X, Chen Q, Zhang J, et al. PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs. Nature Communications. 8: 672. PMID 28939884 DOI: 10.1038/s41467-017-00668-4  1
2017 Yao M, Yu T, Zhao YJ, Hu Z, Li J, Chu D, Zhang J, Li Z, Chen B, Zhang X, Pan H, Li S, Lin H, Liu L, Yan M, et al. MetaLnc9 facilitates lung cancer metastasis via a PGK1-activated AKT/mTOR pathway. Cancer Research. PMID 28923857 DOI: 10.1158/0008-5472.CAN-17-0671  1
2017 Chi Y, Jin Q, Liu X, Xu L, He X, Shen Y, Zhou Q, Zhang J, Jin M. The miR-203 inhibits cell proliferation, invasion, and migration of non-small cell lung cancer by downregulating RGS17. Cancer Science. PMID 28921827 DOI: 10.1111/cas.13401  1
2017 Yin D, Wang Y, Zhang X, Ma X, He X, Zhang J. Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis. Scientific Reports. 7: 11649. PMID 28912544 DOI: 10.1038/s41598-017-12026-x  1
2017 Chen Z, Shao X, He X, Wu J, Xu X, Zhang J. Noninvasive, three-dimensional full-field body sensor for surface deformation monitoring of human body in vivo. Journal of Biomedical Optics. 22: 1-10. PMID 28901052 DOI: 10.1117/1.JBO.22.9.095001  1
2017 Yang H, Li W, Wang L, Li W, Sun H, He X, Zhang J. The Protective Effects of Sika Deer Antler Protein on Cisplatin-Induced Nephrotoxicity. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 43: 395-404. PMID 28869947 DOI: 10.1159/000480418  1
2017 Kong R, Liu W, Guo Y, Feng J, Cheng C, Zhang X, Ma Y, Li S, Jiang J, Zhang J, Qiao Z, Qin J, Lu T, He X. Inhibition of NOB1 by microRNA-330-5p overexpression represses cell growth of non-small cell lung cancer. Oncology Reports. PMID 28849232 DOI: 10.3892/or.2017.5927  1
2017 Zhang S, Zhang J, Chen J, Ai X, He X. Frontal intradiploic meningioma with progressive intracranial invasion: A rare case report. Medicine. 96: e7903. PMID 28834912 DOI: 10.1097/MD.0000000000007903  1
2017 Chai X, Fu YX, James TD, Zhang J, He XP, Tian H. Photochromism and molecular logic gate operation of a water-compatible bis-glycosyl diarylethene. Chemical Communications (Cambridge, England). PMID 28799597 DOI: 10.1039/c7cc04427e  0.64
2017 Moyers BA, Zhang J. Further simulations and analyses demonstrate open problems of phylostratigraphy. Genome Biology and Evolution. PMID 28637261 DOI: 10.1093/gbe/evx109  1
2017 Xu W, Xiao Y, Zhang J, Yang W, Zhang L, Hull V, Wang Z, Zheng H, Liu J, Polasky S, Jiang L, Xiao Y, Shi X, Rao E, Lu F, et al. Reply to Yang et al.: Coastal wetlands are not well represented by protected areas for endangered birds. Proceedings of the National Academy of Sciences of the United States of America. PMID 28626041 DOI: 10.1073/pnas.1706515114  1
2017 Yang JR, Maclean CJ, Park C, Zhao H, Zhang J. Intra- and inter-specific variations of gene expression levels in yeast are largely neutral. Molecular Biology and Evolution. PMID 28575451 DOI: 10.1093/molbev/msx171  1
2017 Xu W, Xiao Y, Zhang J, Yang W, Zhang L, Hull V, Wang Z, Zheng H, Liu J, Polasky S, Jiang L, Xiao Y, Shi X, Rao E, Lu F, et al. Reply to Bridgewater and Babin: Need for a new protected area category for ecosystem services. Proceedings of the National Academy of Sciences of the United States of America. PMID 28536203 DOI: 10.1073/pnas.1703083114  1
2017 Maclean CJ, Metzger BPH, Yang JR, Ho WC, Moyers B, Zhang J. Deciphering the genic basis of yeast fitness variation by simultaneous forward and reverse genetics. Molecular Biology and Evolution. PMID 28472365 DOI: 10.1093/molbev/msx151  1
2017 Zhang J, Li C, Dutta C, Fang M, Zhang S, Tiwari A, Werner T, Luo FT, Liu H. A novel near-infrared fluorescent probe for sensitive detection of β-galactosidase in living cells. Analytica Chimica Acta. 968: 97-104. PMID 28395779 DOI: 10.1016/j.aca.2017.02.039  1
2017 Zou Z, Zhang J. Gene tree discordance does not explain away the temporal decline of convergence in mammalian protein sequence evolution. Molecular Biology and Evolution. PMID 28379570 DOI: 10.1093/molbev/msx109  1
2017 Zhang J, Yu L, Lin M, Yan Q, Yang ST. n-Butanol production from sucrose and sugarcane juice by engineered Clostridium tyrobutyricum overexpressing sucrose catabolism genes and adhE2. Bioresource Technology. 233: 51-57. PMID 28258996 DOI: 10.1016/j.biortech.2017.02.079  0.4
2017 Tian D, Pei Y, Zheng Q, Zhang J, Li S, Wang X, Lin D, Yang Y. Effect of visceral pleural invasion on the prognosis of patients with lymph node negative non-small cell lung cancer. Thoracic Cancer. 8: 97-105. PMID 28256095 DOI: 10.1111/1759-7714.12412  1
2017 Zhang J, Yu L, Xu M, Yang ST, Yan Q, Lin M, Tang IC. Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from sugarcane juice. Applied Microbiology and Biotechnology. PMID 28238080 DOI: 10.1007/s00253-017-8200-1  0.4
2017 Xu W, Xiao Y, Zhang J, Yang W, Zhang L, Hull V, Wang Z, Zheng H, Liu J, Polasky S, Jiang L, Xiao Y, Shi X, Rao E, Lu F, et al. Strengthening protected areas for biodiversity and ecosystem services in China. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137858 DOI: 10.1073/pnas.1620503114  1
2017 Si J, Zhang P, Tian D, Wang X, Ma Y, Zhang J, Wang L, Yang Y. CMTM1_v17 is associated with chemotherapy resistance and poor prognosis in non-small cell lung cancer. World Journal of Surgical Oncology. 15: 34. PMID 28129775 DOI: 10.1186/s12957-016-1094-z  1
2016 Zhang S, Adhikari R, Fang M, Dorh N, Li C, Jaishi M, Zhang J, Tiwari A, Pati R, Luo FT, Liu H. Near-Infrared Fluorescent Probes with Large Stokes Shifts for Sensing Zn(II) Ions in Living Cells. Acs Sensors. 1: 1408-1415. PMID 28845457 DOI: 10.1021/acssensors.6b00490  1
2016 Wei X, Zhang J. The Genomic Architecture of Interactions Between Natural Genetic Polymorphisms and Environments in Yeast Growth. Genetics. PMID 27903611 DOI: 10.1534/genetics.116.195487  1
2016 Wan L, Li B, Pandey MK, Wu Y, Lei Y, Yan L, Dai X, Jiang H, Zhang J, Wei G, Varshney RK, Liao B. Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Frontiers in Plant Science. 7: 1491. PMID 27790222 DOI: 10.3389/fpls.2016.01491  0.72
2016 Ma Y, Zhang P, An G, Zhang X, Zhang L, Si J, Zhang J, Yang Y. Induction of Patient-Derived Xenograft Formation and Clinical Significance of Programmed Cell Death Ligand 1 (PD-L1) in Lung Cancer Patients. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 22: 4017-4025. PMID 27784882  0.6
2016 Huang K, Gao J, Du J, Ma N, Zhu Y, Wu P, Zhang T, Wang W, Li Y, Chen Q, Hutchins AP, Yang Z, Zheng Y, Zhang J, Shan Y, et al. Generation and Analysis of GATA2(w/eGFP) Human ESCs Reveal ITGB3/CD61 as a Reliable Marker for Defining Hemogenic Endothelial Cells during Hematopoiesis. Stem Cell Reports. PMID 27746115 DOI: 10.1016/j.stemcr.2016.09.008  1
2016 Moyers B, Zhang J. Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution. Molecular Biology and Evolution. 33: 3031. PMID 27738272 DOI: 10.1093/molbev/msw202  1
2016 Cui L, Guan Y, Qu Z, Zhang J, Liao B, Ma B, Qian J, Li D, Li W, Xu GT, Jin Y. WNT signaling determines tumorigenicity and function of ESC-derived retinal progenitors. The Journal of Clinical Investigation. 126: 4061. PMID 27694742 DOI: 10.1172/JCI89436  0.72
2016 Zhang Y, Zhao F, Kong M, Wang S, Nan L, Hu B, Olszewski MA, Miao Y, Ji D, Jiang W, Fang Y, Zhang J, Chen F, Xiang P, Wu Y, et al. Validation of a High-Throughput Multiplex Genetic Detection System for Helicobacter pylori Identification, Quantification, Virulence, and Resistance Analysis. Frontiers in Microbiology. 7: 1401. PMID 27656172 DOI: 10.3389/fmicb.2016.01401  1
2016 Zhang Y, Wang S, Hu B, Zhao F, Xiang P, Ji D, Chen F, Liu X, Yang F, Wu Y, Kong M, Nan L, Miao Y, Jiang W, Fang Y, ... Zhang J, et al. Direct detection of Helicobacter pylori in biopsy specimens using a high-throughput multiple genetic detection system. Future Microbiology. PMID 27599152 DOI: 10.2217/fmb-2016-0149  1
2016 Chen X, Zhang J. The X to autosome expression ratio in haploid and diploid human embryonic stem cells. Molecular Biology and Evolution. PMID 27593371 DOI: 10.1093/molbev/msw187  1
2016 Zou Z, Zhang J. Morphological and molecular convergences in mammalian phylogenetics. Nature Communications. 7: 12758. PMID 27585543 DOI: 10.1038/ncomms12758  1
2016 Zhang P, Ma Y, Lv C, Huang M, Li M, Dong B, Liu X, An G, Zhang W, Zhang J, Zhang L, Zhang S, Yang Y. The up-regulation of PD-L1 promotes the resistant response in non-small cell lung cancer patients with neo-adjuvant chemotherapy. Cancer Science. PMID 27581532 DOI: 10.1111/cas.13072  0.68
2016 Li X, Kui L, Zhang J, Xie Y, Wang L, Yan Y, Wang N, Xu J, Li C, Wang W, van Nocker S, Dong Y, Ma F, Guan Q. Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica). Gigascience. 5: 35. PMID 27503335 DOI: 10.1186/s13742-016-0139-0  1
2016 Wei N, Zhou Z, Wei Q, Wang Y, Jiang J, Zhang J, Wu L, Dai S, Li Y. A novel diarylheptanoid-bearing sesquiterpene moiety from the rhizomes of Alpinia officinarum. Natural Product Research. 1-6. PMID 27222912 DOI: 10.1080/14786419.2016.1185716  1
2016 Li W, Liu L, Gomez A, Zhang J, Ramadan A, Zhang Q, Choi SW, Zhang P, Greenson JK, Liu C, Jiang D, Virts E, Kelich SL, Chu HW, Flynn R, et al. Proteomics analysis reveals a Th17-prone cell population in presymptomatic graft-versus-host disease. Jci Insight. 1. PMID 27195312 DOI: 10.1172/jci.insight.86660  0.64
2016 Chen X, Zhang J. The Genomic Landscape of Position Effects on Protein Expression Level and Noise in Yeast. Cell Systems. PMID 27185547 DOI: 10.1016/j.cels.2016.03.009  1
2016 Wischral D, Zhang J, Cheng C, Lin M, De Souza LM, Pessoa FL, Pereira N, Yang ST. Production of 1,3-propanediol by Clostridium beijerinckii DSM 791 from crude glycerol and corn steep liquor: Process optimization and metabolic engineering. Bioresource Technology. 212: 100-110. PMID 27085150 DOI: 10.1016/j.biortech.2016.04.020  0.36
2016 Li C, Qian W, Maclean CJ, Zhang J. The fitness landscape of a tRNA gene. Science (New York, N.Y.). PMID 27080104 DOI: 10.1126/science.aae0568  1
2016 Ma Y, Li M, Si J, Xiong Y, Lu F, Zhang J, Zhang L, Zhang P, Yang Y. Blockade of Notch3 inhibits the stem-like property and is associated with ALDH1A1 and CD44 via autophagy in non-small lung cancer. International Journal of Oncology. PMID 27035162 DOI: 10.3892/ijo.2016.3464  0.6
2016 Xu J, Zhang J. Impact of structure space continuity on protein fold classification. Scientific Reports. 6: 23263. PMID 27006112 DOI: 10.1038/srep23263  1
2016 Yu P, Zhang Z, Li S, Wen X, Quan W, Tian Q, Chen J, Zhang J, Jiang R. Progesterone modulates endothelial progenitor cell (EPC) viability through the CXCL12/CXCR4/PI3K/Akt signalling pathway. Cell Proliferation. PMID 26818151 DOI: 10.1111/cpr.12231  0.6
2016 Fan Y, Lu H, Guo Y, Zhu T, Garcia-Barrio MT, Jiang Z, Willer CJ, Zhang J, Chen YE. Hepatic Transmembrane 6 Superfamily Member 2 Regulates Cholesterol Metabolism in Mice. Gastroenterology. PMID 26774178 DOI: 10.1053/j.gastro.2016.01.005  0.4
2016 Moyers BA, Zhang J. Evaluating phylostratigraphic evidence for widespread de novo gene birth in genome evolution. Molecular Biology and Evolution. PMID 26758516 DOI: 10.1093/molbev/msw008  1
2016 Ho WC, Zhang J. Adaptive genetic robustness of Escherichia coli metabolic fluxes. Molecular Biology and Evolution. PMID 26733489 DOI: 10.1093/molbev/msw002  1
2015 Xu J, Zhang J. Are human translated pseudogenes functional? Molecular Biology and Evolution. PMID 26589994 DOI: 10.1093/molbev/msv268  1
2015 Chen X, Yang JR, Zhang J. Nascent RNA folding mitigates transcription-associated mutagenesis. Genome Research. PMID 26518484 DOI: 10.1101/gr.195164.115  1
2015 Tong R, Feng L, Zhang L, Zhang J, Mao Y, Zhang K, Gao Y, Wang G, Cheng S. Decreased Interferon Alpha/Beta Signature Associated with Human Lung Tumorigenesis. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. PMID 26308599 DOI: 10.1089/jir.2015.0061  0.44
2015 Chen S, Lei Y, Xu X, Huang J, Jiang H, Wang J, Cheng Z, Zhang J, Song Y, Liao B, Li Y. The Peanut (Arachis hypogaea L.) Gene AhLPAT2 Increases the Lipid Content of Transgenic Arabidopsis Seeds. Plos One. 10: e0136170. PMID 26302041 DOI: 10.1371/journal.pone.0136170  0.68
2015 Zhao C, Su Y, Zhang J, Feng Q, Qu L, Wang L, Liu C, Jiang B, Meng L, Shou C. Fibrinogen-derived fibrinostatin inhibits tumor growth through anti-angiogenesis. Cancer Science. PMID 26300396 DOI: 10.1111/cas.12797  0.44
2015 Zhang L, Zhang J, Ma Y, Chen J, Dong B, Zhao W, Wang X, Zheng Q, Fang F, Yang Y. Testicular orphan receptor 4 (TR4) is a marker for metastasis and poor prognosis in non-small cell lung cancer that drives the EMT phenotype. Lung Cancer (Amsterdam, Netherlands). PMID 26144287 DOI: 10.1016/j.lungcan.2015.06.007  1
2015 Zhang J, Yang JR. Determinants of the rate of protein sequence evolution. Nature Reviews. Genetics. 16: 409-20. PMID 26055156 DOI: 10.1038/nrg3950  1
2015 Lv C, An C, Feng Q, Ma Y, Li S, Wang J, Zhang J, Wang X, Yan S, Fang J, Wang Y, Tan F, Yang Y. A Retrospective Study of Stage I to IIIa Lung Adenocarcinoma After Resection: What Is the Optimal Adjuvant Modality for Patients With an EGFR Mutation? Clinical Lung Cancer. 16: e173-81. PMID 25958850 DOI: 10.1016/j.cllc.2015.04.002  1
2015 Zou Z, Zhang J. Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations? Molecular Biology and Evolution. 32: 2085-96. PMID 25862140 DOI: 10.1093/molbev/msv091  1
2015 Jin G, Peng L, Zhang J, Qu L, Shou C. Cancer and embryo expression protein 65 promotes cancer cell growth and metastasis. Oncology Letters. 9: 1772-1778. PMID 25789040 DOI: 10.3892/ol.2015.2958  0.4
2015 Zhang J, Li J, Huang Z, Yang B, Zhang X, Li D, Craik DJ, Baker AJ, Shu W, Liao B. Transcriptomic screening for cyclotides and other cysteine-rich proteins in the metallophyte Viola baoshanensis. Journal of Plant Physiology. 178: 17-26. PMID 25756919 DOI: 10.1016/j.jplph.2015.01.017  0.4
2015 Chen X, Zhang J. No X-chromosome dosage compensation in human proteomes. Molecular Biology and Evolution. 32: 1456-60. PMID 25697342 DOI: 10.1093/molbev/msv036  1
2015 Zhao H, Li J, Zhang J. Molecular evidence for the loss of three basic tastes in penguins. Current Biology : Cb. 25: R141-2. PMID 25689905 DOI: 10.1016/j.cub.2015.01.026  1
2015 Zou Z, Zhang J. No genome-wide protein sequence convergence for echolocation. Molecular Biology and Evolution. 32: 1237-41. PMID 25631925 DOI: 10.1093/molbev/msv014  1
2015 Wei X, Zhang J. A simple method for estimating the strength of natural selection on overlapping genes. Genome Biology and Evolution. 7: 381-90. PMID 25552532 DOI: 10.1093/gbe/evu294  1
2015 Yang JR, Zhang J. Human long noncoding RNAs are substantially less folded than messenger RNAs. Molecular Biology and Evolution. 32: 970-7. PMID 25540450 DOI: 10.1093/molbev/msu402  1
2015 Zhang J, Hua Z, Huang Z, Chen Q, Long Q, Craik DJ, Baker AJ, Shu W, Liao B. Two Blast-independent tools, CyPerl and CyExcel, for harvesting hundreds of novel cyclotides and analogues from plant genomes and protein databases. Planta. 241: 929-40. PMID 25528148 DOI: 10.1007/s00425-014-2229-5  0.4
2015 Xu G, Zhang J. In search of beneficial coding RNA editing. Molecular Biology and Evolution. 32: 536-41. PMID 25392343 DOI: 10.1093/molbev/msu314  1
2015 Moyers BA, Zhang J. Phylostratigraphic bias creates spurious patterns of genome evolution. Molecular Biology and Evolution. 32: 258-67. PMID 25312911 DOI: 10.1093/molbev/msu286  1
2014 Wang X, Wang Y, Li S, Dong B, Zheng Q, Yan S, Ma Y, Zhang J, Fang J, Wu N, Wu H, Yang Y. Decreased maspin combined with elevated vascular endothelial growth factor C is associated with poor prognosis in non-small cell lung cancer. Thoracic Cancer. 5: 383-90. PMID 26767029 DOI: 10.1111/1759-7714.12104  1
2014 Liao B, Zhang F, Lin S, He H, Liu Y, Zhang J, Xu Y, Yi J, Chen Y, Liu H, Wang Z, Cai W. Epidemiological, clinical and histological characteristics of HBV/HDV co-infection: a retrospective cross-sectional study in Guangdong, China. Plos One. 9: e115888. PMID 25532128 DOI: 10.1371/journal.pone.0115888  1
2014 Chen X, Zhang J. Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites. Proceedings of the National Academy of Sciences of the United States of America. 111: E4062. PMID 25217566 DOI: 10.1073/pnas.1412284111  1
2014 Yang JR, Ruan S, Zhang J. Determinative developmental cell lineages are robust to cell deaths. Plos Genetics. 10: e1004501. PMID 25058586 DOI: 10.1371/journal.pgen.1004501  1
2014 Yang JR, Chen X, Zhang J. Codon-by-codon modulation of translational speed and accuracy via mRNA folding. Plos Biology. 12: e1001910. PMID 25051069 DOI: 10.1371/journal.pbio.1001910  1
2014 Qian W, Zhang J. Genomic evidence for adaptation by gene duplication. Genome Research. 24: 1356-62. PMID 24904045 DOI: 10.1101/gr.172098.114  1
2014 Wan L, Wu Y, Huang J, Dai X, Lei Y, Yan L, Jiang H, Zhang J, Varshney RK, Liao B. Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response. Functional & Integrative Genomics. 14: 467-77. PMID 24902799 DOI: 10.1007/s10142-014-0381-4  0.72
2014 Xu J, Zhang J. Why human disease-associated residues appear as the wild-type in other species: genome-scale structural evidence for the compensation hypothesis. Molecular Biology and Evolution. 31: 1787-92. PMID 24723421 DOI: 10.1093/molbev/msu130  1
2014 Ho WC, Zhang J. The genotype-phenotype map of yeast complex traits: basic parameters and the role of natural selection. Molecular Biology and Evolution. 31: 1568-80. PMID 24723420 DOI: 10.1093/molbev/msu131  1
2014 Xu G, Zhang J. Human coding RNA editing is generally nonadaptive. Proceedings of the National Academy of Sciences of the United States of America. 111: 3769-74. PMID 24567376 DOI: 10.1073/pnas.1321745111  1
2014 Li D, Zhang J. Diet shapes the evolution of the vertebrate bitter taste receptor gene repertoire. Molecular Biology and Evolution. 31: 303-9. PMID 24202612 DOI: 10.1093/molbev/mst219  1
2014 Zhao B, Han H, Chen J, Zhang Z, Li S, Fang F, Zheng Q, Ma Y, Zhang J, Wu N, Yang Y. MicroRNA let-7c inhibits migration and invasion of human non-small cell lung cancer by targeting ITGB3 and MAP4K3. Cancer Letters. 342: 43-51. PMID 23981581 DOI: 10.1016/j.canlet.2013.08.030  1
2013 Chen X, Zhang J. Why are genes encoded on the lagging strand of the bacterial genome? Genome Biology and Evolution. 5: 2436-9. PMID 24273314 DOI: 10.1093/gbe/evt193  1
2013 Li C, Wang Z, Zhang J. Toward genome-wide identification of Bateson-Dobzhansky-Muller incompatibilities in yeast: a simulation study. Genome Biology and Evolution. 5: 1261-72. PMID 23742870 DOI: 10.1093/gbe/evt091  1
2013 Zhang J, Wagner GP. On the definition and measurement of pleiotropy. Trends in Genetics : Tig. 29: 383-4. PMID 23727272 DOI: 10.1016/j.tig.2013.05.002  1
2013 Zhang J, Wei J, Lu J, Tong Z, Liao B, Yu B, Zheng F, Huang X, Chen Z, Fang Y, Li B, Chen W, Xie D, Luo J. Overexpression of Rab25 contributes to metastasis of bladder cancer through induction of epithelial-mesenchymal transition and activation of Akt/GSK-3β/Snail signaling. Carcinogenesis. 34: 2401-8. PMID 23722651 DOI: 10.1093/carcin/bgt187  0.72
2013 Wang Y, Sheng S, Zhang J, Dzinic S, Li S, Fang F, Wu N, Zheng Q, Yang Y. Elevated maspin expression is associated with better overall survival in esophageal squamous cell carcinoma (ESCC). Plos One. 8: e63581. PMID 23717449 DOI: 10.1371/journal.pone.0063581  0.64
2013 Chen X, Zhang J. No gene-specific optimization of mutation rate in Escherichia coli. Molecular Biology and Evolution. 30: 1559-62. PMID 23533222 DOI: 10.1093/molbev/mst060  1
2013 Cui L, Guan Y, Qu Z, Zhang J, Liao B, Ma B, Qian J, Li D, Li W, Xu GT, Jin Y. WNT signaling determines tumorigenicity and function of ESC-derived retinal progenitors. The Journal of Clinical Investigation. 123: 1647-61. PMID 23524971 DOI: 10.1172/JCI65048  0.72
2013 Zhang J, Kopparapu NK, Yan Q, Yang S, Jiang Z. Purification and characterisation of a novel chitinase from persimmon (Diospyros kaki) with antifungal activity. Food Chemistry. 138: 1225-32. PMID 23411236 DOI: 10.1016/j.foodchem.2012.11.067  0.4
2013 Park C, Chen X, Yang JR, Zhang J. Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 110: E678-86. PMID 23382244 DOI: 10.1073/pnas.1218066110  1
2013 Fang F, Zheng Q, Zhang J, Dong B, Zhu S, Huang X, Wang Y, Zhao B, Li S, Xiong H, Chen J, Wu N, Song SW, Chang C, Yang Y. Testicular orphan nuclear receptor 4-associated protein 16 promotes non-small cell lung carcinoma by activating estrogen receptor β and blocking testicular orphan nuclear receptor 2. Oncology Reports. 29: 297-305. PMID 23129017 DOI: 10.3892/or.2012.2107  0.68
2012 Chen X, Zhang J. The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data. Plos Computational Biology. 8: e1002784. PMID 23209392 DOI: 10.1371/journal.pcbi.1002784  1
2012 Park C, Qian W, Zhang J. Genomic evidence for elevated mutation rates in highly expressed genes. Embo Reports. 13: 1123-9. PMID 23146897 DOI: 10.1038/embor.2012.165  1
2012 Qian W, Ma D, Xiao C, Wang Z, Zhang J. The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast. Cell Reports. 2: 1399-410. PMID 23103169 DOI: 10.1016/j.celrep.2012.09.017  1
2012 Zhang Y, Liu C, Peng H, Zhang J, Feng Q. IL1 receptor antagonist gene IL1-RN variable number of tandem repeats polymorphism and cancer risk: a literature review and meta-analysis. Plos One. 7: e46017. PMID 23049925 DOI: 10.1371/journal.pone.0046017  0.44
2012 Zhang J. Genetic redundancies and their evolutionary maintenance. Advances in Experimental Medicine and Biology. 751: 279-300. PMID 22821463 DOI: 10.1007/978-1-4614-3567-9_13  1
2012 Lin F, Xing K, Zhang J, He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 109: 11752-7. PMID 22753487 DOI: 10.1073/pnas.1201816109  1
2012 Zhao H, Zhang J. Mismatches between feeding ecology and taste receptor evolution: an inconvenient truth. Proceedings of the National Academy of Sciences of the United States of America. 109: E1464; author reply . PMID 22562799 DOI: 10.1073/pnas.1205205109  1
2012 Qian W, Yang JR, Pearson NM, Maclean C, Zhang J. Balanced codon usage optimizes eukaryotic translational efficiency. Plos Genetics. 8: e1002603. PMID 22479199 DOI: 10.1371/journal.pgen.1002603  1
2012 Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biology and Evolution. 4: 523-32. PMID 22436996 DOI: 10.1093/gbe/evs030  1
2012 Yang JR, Liao BY, Zhuang SM, Zhang J. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 109: E831-40. PMID 22416125 DOI: 10.1073/pnas.1117408109  1
2012 Zhao H, Xu D, Zhang S, Zhang J. Genomic and genetic evidence for the loss of umami taste in bats. Genome Biology and Evolution. 4: 73-9. PMID 22117084 DOI: 10.1093/gbe/evr126  1
2011 Zhang J. A panorama of mammalian gene expression evolution. Molecular Systems Biology. 7: 552. PMID 22108794 DOI: 10.1038/msb.2011.86  1
2011 Qian W, He X, Chan E, Xu H, Zhang J. Measuring the evolutionary rate of protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 108: 8725-30. PMID 21555556 DOI: 10.1073/pnas.1104695108  1
2011 Park SH, Podlaha O, Grus WE, Zhang J. The microevolution of V1r vomeronasal receptor genes in mice. Genome Biology and Evolution. 3: 401-12. PMID 21551350 DOI: 10.1093/gbe/evr039  1
2011 Huang J, Zhang J, Zhao Y, Liao B, Liu J, Li L, Liao M, Wang L. The Arg194Trp polymorphism in the XRCC1 gene and cancer risk in Chinese Mainland population: a meta-analysis. Molecular Biology Reports. 38: 4565-73. PMID 21499756 DOI: 10.1007/s11033-010-0588-y  0.72
2011 Wang Z, Zhang J. Impact of gene expression noise on organismal fitness and the efficacy of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 108: E67-76. PMID 21464323 DOI: 10.1073/pnas.1100059108  1
2011 Park C, Zhang J. Genome-wide evolutionary conservation of N-glycosylation sites. Molecular Biology and Evolution. 28: 2351-7. PMID 21355035 DOI: 10.1093/molbev/msr055  1
2011 Wagner GP, Zhang J. The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms. Nature Reviews. Genetics. 12: 204-13. PMID 21331091 DOI: 10.1038/nrg2949  1
2011 Liu Y, Zhang Z, Jiang Y, Zhang L, Popov VL, Zhang J, Walker DH, Yu XJ. Obligate intracellular bacterium Ehrlichia inhibiting mitochondrial activity. Microbes and Infection / Institut Pasteur. 13: 232-8. PMID 21070861 DOI: 10.1016/j.micinf.2010.10.021  1
2011 Zhao H, Xu D, Zhang S, Zhang J. Widespread losses of vomeronasal signal transduction in bats. Molecular Biology and Evolution. 28: 7-12. PMID 20693241 DOI: 10.1093/molbev/msq207  1
2010 Li JT, Deng DM, Peng GT, Deng JC, Zhang J, Liao B. Successful micropropagation of the cadmium hyperaccumulator Viola baoshanensis (Violaceae). International Journal of Phytoremediation. 12: 761-71. PMID 21166346 DOI: 10.1080/15226510903390486  0.72
2010 Wu C, Liao B, Wang SL, Zhang J, Li JT. Pb and Zn accumulation in a Cd-hyperaccumulator (Viola baoshanensis). International Journal of Phytoremediation. 12: 574-85. PMID 21166282 DOI: 10.1080/15226510903353195  0.72
2010 Xiong Y, Chen X, Chen Z, Wang X, Shi S, Wang X, Zhang J, He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nature Genetics. 42: 1043-7. PMID 21102464 DOI: 10.1038/ng.711  1
2010 Yang JR, Zhuang SM, Zhang J. Impact of translational error-induced and error-free misfolding on the rate of protein evolution. Molecular Systems Biology. 6: 421. PMID 20959819 DOI: 10.1038/msb.2010.78  1
2010 Wang Z, Liao BY, Zhang J. Genomic patterns of pleiotropy and the evolution of complexity. Proceedings of the National Academy of Sciences of the United States of America. 107: 18034-9. PMID 20876104 DOI: 10.1073/pnas.1004666107  1
2010 Qian W, Liao BY, Chang AY, Zhang J. Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends in Genetics : Tig. 26: 425-30. PMID 20708291 DOI: 10.1016/j.tig.2010.07.002  1
2010 Zhao H, Yang JR, Xu H, Zhang J. Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. Molecular Biology and Evolution. 27: 2669-73. PMID 20573776 DOI: 10.1093/molbev/msq153  1
2010 Zhao H, Zhou Y, Pinto CM, Charles-Dominique P, Galindo-González J, Zhang S, Zhang J. Evolution of the sweet taste receptor gene Tas1r2 in bats. Molecular Biology and Evolution. 27: 2642-50. PMID 20558596 DOI: 10.1093/molbev/msq152  1
2010 Liao BY, Weng MP, Zhang J. Contrasting genetic paths to morphological and physiological evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7353-8. PMID 20368429 DOI: 10.1073/pnas.0910339107  1
2010 Zhang J, Song C, Chen B, Yao S. [Simultaneous determination of five nucleotides in Bulbus Fritillariae by RP-HPLC]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 35: 67-70. PMID 20349719  0.48
2010 Liao BY, Weng MP, Zhang J. Impact of extracellularity on the evolutionary rate of mammalian proteins. Genome Biology and Evolution. 2: 39-43. PMID 20333223 DOI: 10.1093/gbe/evp058  1
2010 Li Y, Liu Z, Shi P, Zhang J. The hearing gene Prestin unites echolocating bats and whales. Current Biology : Cb. 20: R55-6. PMID 20129037 DOI: 10.1016/j.cub.2009.11.042  1
2010 He X, Qian W, Wang Z, Li Y, Zhang J. Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nature Genetics. 42: 272-6. PMID 20101242 DOI: 10.1038/ng.524  1
2009 Qian W, Zhang J. Protein subcellular relocalization in the evolution of yeast singleton and duplicate genes. Genome Biology and Evolution. 1: 198-204. PMID 20333190 DOI: 10.1093/gbe/evp021  1
2009 Wang Z, Zhang J. Abundant indispensable redundancies in cellular metabolic networks. Genome Biology and Evolution. 1: 23-33. PMID 20333174 DOI: 10.1093/gbe/evp002  1
2009 Barkman T, Zhang J. Evidence for escape from adaptive conflict? Nature. 462: E1; discussion E2-3. PMID 20010636 DOI: 10.1038/nature08663  1
2009 Podlaha O, Zhang J. Processed pseudogenes: the 'fossilized footprints' of past gene expression. Trends in Genetics : Tig. 25: 429-34. PMID 19796837 DOI: 10.1016/j.tig.2009.09.002  1
2009 Zhang Z, Qian W, Zhang J. Positive selection for elevated gene expression noise in yeast. Molecular Systems Biology. 5: 299. PMID 19690568 DOI: 10.1038/msb.2009.58  1
2009 Zhang J. Phylogenetic evidence for parallel adaptive origins of digestive RNases in Asian and African leaf monkeys: a response to Xu et al. (2009). Molecular Phylogenetics and Evolution. 53: 608-9; author reply . PMID 19595778 DOI: 10.1016/j.ympev.2009.07.003  1
2009 Zhang Z, Zhang J. A big world inside small-world networks. Plos One. 4: e5686. PMID 19479083 DOI: 10.1371/journal.pone.0005686  1
2009 He X, Zhang J. On the growth of scientific knowledge: yeast biology as a case study. Plos Computational Biology. 5: e1000320. PMID 19300476 DOI: 10.1371/journal.pcbi.1000320  1
2009 Wang Z, Zhang J. Why is the correlation between gene importance and gene evolutionary rate so weak? Plos Genetics. 5: e1000329. PMID 19132081 DOI: 10.1371/journal.pgen.1000329  1
2009 Zhang J, Hu M, Li JT, Guan JP, Yang B, Shu WS, Liao B. A transcriptional profile of metallophyte Viola baoshanensis involved in general and species-specific cadmium-defense mechanisms. Journal of Plant Physiology. 166: 862-70. PMID 19106016 DOI: 10.1016/j.jplph.2008.11.003  0.72
2009 Zhang J, Liao B, Craik DJ, Li JT, Hu M, Shu WS. Identification of two suites of cyclotide precursor genes from metallophyte Viola baoshanensis: cDNA sequence variation, alternative RNA splicing and potential cyclotide diversity. Gene. 431: 23-32. PMID 19071200 DOI: 10.1016/j.gene.2008.11.005  0.72
2009 Grus WE, Zhang J. Origin of the genetic components of the vomeronasal system in the common ancestor of all extant vertebrates. Molecular Biology and Evolution. 26: 407-19. PMID 19008528 DOI: 10.1093/molbev/msn262  1
2008 Zhang J. Positive selection, not negative selection, in the pseudogenization of rcsA in Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America. 105: E69; author reply E7. PMID 18922766 DOI: 10.1073/pnas.0806419105  1
2008 Qian W, Zhang J. Gene dosage and gene duplicability. Genetics. 179: 2319-24. PMID 18689880 DOI: 10.1534/genetics.108.090936  1
2008 Grus WE, Zhang J. Distinct evolutionary patterns between chemoreceptors of 2 vertebrate olfactory systems and the differential tuning hypothesis. Molecular Biology and Evolution. 25: 1593-601. PMID 18460446 DOI: 10.1093/molbev/msn107  1
2008 Liao BY, Zhang J. Null mutations in human and mouse orthologs frequently result in different phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 105: 6987-92. PMID 18458337 DOI: 10.1073/pnas.0800387105  1
2008 Liao BY, Zhang J. Coexpression of linked genes in Mammalian genomes is generally disadvantageous. Molecular Biology and Evolution. 25: 1555-65. PMID 18440951 DOI: 10.1093/molbev/msn101  1
2008 Zhang Z, Zhang J. Accuracy and application of the motif expression decomposition method in dissecting transcriptional regulation. Nucleic Acids Research. 36: 3185-93. PMID 18411204 DOI: 10.1093/nar/gkn127  1
2008 Gong M, Meng L, Jiang B, Zhang J, Yang H, Wu J, Shou C. p37 from Mycoplasma hyorhinis promotes cancer cell invasiveness and metastasis through activation of MMP-2 and followed by phosphorylation of EGFR. Molecular Cancer Therapeutics. 7: 530-7. PMID 18347140 DOI: 10.1158/1535-7163.MCT-07-2191  0.52
2008 Ren T, Jiang B, Jin G, Li J, Dong B, Zhang J, Meng L, Wu J, Shou C. Generation of novel monoclonal antibodies and their application for detecting ARD1 expression in colorectal cancer. Cancer Letters. 264: 83-92. PMID 18325661 DOI: 10.1016/j.canlet.2008.01.028  0.52
2008 Qian W, Zhang J. Evolutionary dynamics of nematode operons: easy come, slow go. Genome Research. 18: 412-21. PMID 18218978 DOI: 10.1101/gr.7112608  1
2007 Zhang J. The drifting human genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 20147-8. PMID 18093959 DOI: 10.1073/pnas.0710524105  1
2007 Cho S, Huang ZY, Zhang J. Sex-specific splicing of the honeybee doublesex gene reveals 300 million years of evolution at the bottom of the insect sex-determination pathway. Genetics. 177: 1733-41. PMID 17947419 DOI: 10.1534/genetics.107.078980  1
2007 Grus WE, Shi P, Zhang J. Largest vertebrate vomeronasal type 1 receptor gene repertoire in the semiaquatic platypus. Molecular Biology and Evolution. 24: 2153-7. PMID 17666439 DOI: 10.1093/molbev/msm157  1
2007 Wang X, Zhang J. Rapid evolution of primate ESX1, an X-linked placenta- and testis-expressed homeobox gene. Human Molecular Genetics. 16: 2053-60. PMID 17588961 DOI: 10.1093/hmg/ddm153  1
2007 Liao BY, Zhang J. Mouse duplicate genes are as essential as singletons. Trends in Genetics : Tig. 23: 378-81. PMID 17559966 DOI: 10.1016/j.tig.2007.05.006  1
2007 Wang Z, Zhang J. In search of the biological significance of modular structures in protein networks. Plos Computational Biology. 3: e107. PMID 17542644 DOI: 10.1371/journal.pcbi.0030107  1
2007 Guo J, Shou C, Meng L, Jiang B, Dong B, Yao L, Xie Y, Zhang J, Chen Y, Budman DR, Shi YE. Neuronal protein synuclein gamma predicts poor clinical outcome in breast cancer. International Journal of Cancer. Journal International Du Cancer. 121: 1296-305. PMID 17534899 DOI: 10.1002/ijc.22763  0.52
2007 Bakewell MA, Shi P, Zhang J. More genes underwent positive selection in chimpanzee evolution than in human evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 7489-94. PMID 17449636 DOI: 10.1073/pnas.0701705104  1
2007 Cho S, Zhang J. Zebrafish ribonucleases are bactericidal: implications for the origin of the vertebrate RNase A superfamily. Molecular Biology and Evolution. 24: 1259-68. PMID 17347156 DOI: 10.1093/molbev/msm047  1
2007 Shi P, Zhang J. Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Research. 17: 166-74. PMID 17210926 DOI: 10.1101/gr.6040007  1
2007 Zhang J. Disulfide-bond reshuffling in the evolution of an ape placental ribonuclease. Molecular Biology and Evolution. 24: 505-12. PMID 17116644 DOI: 10.1093/molbev/msl177  1
2006 Cho S, Huang ZY, Green DR, Smith DR, Zhang J. Evolution of the complementary sex-determination gene of honey bees: balancing selection and trans-species polymorphisms. Genome Research. 16: 1366-75. PMID 17065615 DOI: 10.1101/gr.4695306  1
2006 Shi P, Bakewell MA, Zhang J. Did brain-specific genes evolve faster in humans than in chimpanzees? Trends in Genetics : Tig. 22: 608-13. PMID 16978728 DOI: 10.1016/j.tig.2006.09.001  1
2006 Liao BY, Scott NM, Zhang J. Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Molecular Biology and Evolution. 23: 2072-80. PMID 16887903 DOI: 10.1093/molbev/msl076  1
2006 Podlaha O, Webb DM, Zhang J. Accelerated evolution and loss of a domain of the sperm-egg-binding protein SED1 in ancestral primates. Molecular Biology and Evolution. 23: 1828-31. PMID 16864605 DOI: 10.1093/molbev/msl066  1
2006 Grus WE, Zhang J. Origin and evolution of the vertebrate vomeronasal system viewed through system-specific genes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 709-18. PMID 16850401 DOI: 10.1002/bies.20432  1
2006 Zhang J. Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys. Nature Genetics. 38: 819-23. PMID 16767103 DOI: 10.1038/ng1812  1
2006 He X, Zhang J. Why do hubs tend to be essential in protein networks? Plos Genetics. 2: e88. PMID 16751849 DOI: 10.1371/journal.pgen.0020088  1
2006 He X, Zhang J. Toward a molecular understanding of pleiotropy. Genetics. 173: 1885-91. PMID 16702416 DOI: 10.1534/genetics.106.060269  1
2006 Wang X, Zhang J. Remarkable expansions of an X-linked reproductive homeobox gene cluster in rodent evolution. Genomics. 88: 34-43. PMID 16574372 DOI: 10.1016/j.ygeno.2006.02.007  1
2006 Cho S, Zhang J. Ancient expansion of the ribonuclease A superfamily revealed by genomic analysis of placental and marsupial mammals. Gene. 373: 116-25. PMID 16530354 DOI: 10.1016/j.gene.2006.01.018  1
2006 Liao BY, Zhang J. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Molecular Biology and Evolution. 23: 1119-28. PMID 16520335 DOI: 10.1093/molbev/msj119  1
2006 Wang X, Grus WE, Zhang J. Gene losses during human origins. Plos Biology. 4: e52. PMID 16464126 DOI: 10.1371/journal.pbio.0040052  1
2006 He X, Zhang J. Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics. 172: 1363-7. PMID 16322517 DOI: 10.1534/genetics.105.049890  1
2006 Liao BY, Zhang J. Evolutionary conservation of expression profiles between human and mouse orthologous genes. Molecular Biology and Evolution. 23: 530-40. PMID 16280543 DOI: 10.1093/molbev/msj054  1
2006 Shi P, Zhang J. Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes. Molecular Biology and Evolution. 23: 292-300. PMID 16207936 DOI: 10.1093/molbev/msj028  1
2006 He X, Zhang J. Higher duplicability of less important genes in yeast genomes. Molecular Biology and Evolution. 23: 144-51. PMID 16151181 DOI: 10.1093/molbev/msj015  1
2005 Zhang J, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Molecular Biology and Evolution. 22: 2472-9. PMID 16107592 DOI: 10.1093/molbev/msi237  1
2005 He X, Zhang J. Gene complexity and gene duplicability. Current Biology : Cb. 15: 1016-21. PMID 15936271 DOI: 10.1016/j.cub.2005.04.035  1
2005 Podlaha O, Webb DM, Tucker PK, Zhang J. Positive selection for indel substitutions in the rodent sperm protein catsper1. Molecular Biology and Evolution. 22: 1845-52. PMID 15930155 DOI: 10.1093/molbev/msi178  1
2005 Grus WE, Shi P, Zhang YP, Zhang J. Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proceedings of the National Academy of Sciences of the United States of America. 102: 5767-72. PMID 15790682 DOI: 10.1073/pnas.0501589102  1
2005 Zhang J, He X. Significant impact of protein dispensability on the instantaneous rate of protein evolution. Molecular Biology and Evolution. 22: 1147-55. PMID 15689524 DOI: 10.1093/molbev/msi101  1
2005 He X, Zhang J. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics. 169: 1157-64. PMID 15654095 DOI: 10.1534/genetics.104.037051  1
2005 Zhang J. On the evolution of codon volatility. Genetics. 169: 495-501. PMID 15466418 DOI: 10.1534/genetics.104.034884  1
2004 Grus WE, Zhang J. Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats. Gene. 340: 303-12. PMID 15475172 DOI: 10.1016/j.gene.2004.07.037  1
2004 Podlaha O, Zhang J. Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Molecular Biology and Evolution. 21: 2202-9. PMID 15306660 DOI: 10.1093/molbev/msh230  1
2004 Zhang J, Webb DM. Rapid evolution of primate antiviral enzyme APOBEC3G. Human Molecular Genetics. 13: 1785-91. PMID 15198990 DOI: 10.1093/hmg/ddh183  1
2004 Zhang J. Evolution of DMY, a newly emergent male sex-determination gene of medaka fish. Genetics. 166: 1887-95. PMID 15126406  0.01
2004 Zhang J, Wang X, Podlaha O. Testing the chromosomal speciation hypothesis for humans and chimpanzees. Genome Research. 14: 845-51. PMID 15123584 DOI: 10.1101/gr.1891104  1
2004 Zhang J. Frequent false detection of positive selection by the likelihood method with branch-site models. Molecular Biology and Evolution. 21: 1332-9. PMID 15014150 DOI: 10.1093/molbev/msh117  0.01
2003 Zhang J. Evolution of the human ASPM gene, a major determinant of brain size. Genetics. 165: 2063-70. PMID 14704186  0.01
2003 Podlaha O, Zhang J. Positive selection on protein-length in the evolution of a primate sperm ion channel. Proceedings of the National Academy of Sciences of the United States of America. 100: 12241-6. PMID 14523237 DOI: 10.1073/pnas.2033555100  1
2003 Zhang J. Paleomolecular biology unravels the evolutionary mystery of vertebrate UV vision. Proceedings of the National Academy of Sciences of the United States of America. 100: 8045-7. PMID 12835423 DOI: 10.1073/pnas.1533183100  0.01
2003 Zhang J, Webb DM. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proceedings of the National Academy of Sciences of the United States of America. 100: 8337-41. PMID 12826614 DOI: 10.1073/pnas.1331721100  1
2003 Zhang J. Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions. Molecular Biology and Evolution. 20: 1310-7. PMID 12777504 DOI: 10.1093/molbev/msg143  0.01
2003 Zhang J, Zhang YP. Pseudogenization of the tumor-growth promoter angiogenin in a leaf-eating monkey. Gene. 308: 95-101. PMID 12711394  1
2003 Zhang J, Dyer KD, Rosenberg HF. Human RNase 7: a new cationic ribonuclease of the RNase A superfamily. Nucleic Acids Research. 31: 602-7. PMID 12527768 DOI: 10.1093/nar/gkg157  1
2002 Zhang J, Webb DM, Podlaha O. Accelerated protein evolution and origins of human-specific features: Foxp2 as an example. Genetics. 162: 1825-35. PMID 12524352  1
2000 Zhang J, Nei M. Positive selection in the evolution of mammalian interleukin-2 genes. Molecular Biology and Evolution. 17: 1413-6. PMID 10958857  1
2000 Rooney AP, Zhang J, Nei M. An unusual form of purifying selection in a sperm protein. Molecular Biology and Evolution. 17: 278-83. PMID 10677850  1
1998 Nei M, Zhang J. Molecular origin of species. Science (New York, N.Y.). 282: 1428-9. PMID 9867649  1
1998 Zhang J, Rosenberg HF, Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proceedings of the National Academy of Sciences of the United States of America. 95: 3708-13. PMID 9520431 DOI: 10.1073/pnas.95.7.3708  1
1997 Zhang J, Kumar S, Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Molecular Biology and Evolution. 14: 1335-8. PMID 9402743  1
1997 Nei M, Zhang J, Yokoyama S. Color vision of ancestral organisms of higher primates. Molecular Biology and Evolution. 14: 611-8. PMID 9190062  1
1997 Zhang J, Nei M. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. Journal of Molecular Evolution. 44: S139-46. PMID 9071022 DOI: 10.1007/PL00000067  1
1996 Zhang J, Nei M. Evolution of Antennapedia-class homeobox genes. Genetics. 142: 295-303. PMID 8770606  1
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