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Julin Maloof - Publications

Affiliations: 
University of California, Davis, Davis, CA 
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66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Demirer GS, Gibson DJ, Yue X, Pan K, Elishav E, Khandal H, Horev G, Tarkowská D, Cantó-Pastor A, Kong S, Manzano C, Maloof JN, Savaldi-Goldstein S, Brady SM. Phosphate deprivation-induced changes in tomato are mediated by an interaction between brassinosteroid signaling and zinc. The New Phytologist. PMID 37306070 DOI: 10.1111/nph.19007  0.755
2022 Cobo-Simón I, Maloof JN, Li R, Amini H, Méndez-Cea B, García-García I, Gómez-Garrido J, Esteve-Codina A, Dabad M, Alioto T, Wegrzyn JL, Seco J, Linares JC, Gallego FJ. Contrasting transcriptomic patterns reveal a genomic basis for drought resilience in the relict fir Abies pinsapo Boiss. Tree Physiology. PMID 36210755 DOI: 10.1093/treephys/tpac115  0.34
2020 Ta J, Palmer C, Brock M, Rubin M, Weinig C, Maloof J, Runcie D. Multiple Loci Control Variation in Plasticity to Foliar Shade Throughout Development in . G3 (Bethesda, Md.). PMID 32988993 DOI: 10.1534/g3.120.401259  0.463
2020 Li C, Nozue K, Maloof JN. MYCs and PIFs Act Independently in Arabidopsis Growth Regulation. G3 (Bethesda, Md.). PMID 32220954 DOI: 10.1534/g3.120.401188  0.338
2019 Baker RL, Leong WF, Brock MT, Rubin MJ, Markelz RJC, Welch S, Maloof JN, Weinig C. Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development. Plos Genetics. 15: e1008367. PMID 31513571 DOI: 10.1371/Journal.Pgen.1008367  0.41
2018 Li R, Jeong K, Davis JT, Kim S, Lee S, Michelmore RW, Kim S, Maloof JN. Integrated QTL and eQTL Mapping Provides Insights and Candidate Genes for Fatty Acid Composition, Flowering Time, and Growth Traits in a F Population of a Novel Synthetic Allopolyploid . Frontiers in Plant Science. 9: 1632. PMID 30483289 DOI: 10.3389/Fpls.2018.01632  0.426
2018 Schrager-Lavelle A, Gath NN, Devisetty UK, Carrera E, López-Díaz I, Blazquez MA, Maloof JN. The Role of a Class III GA 2-Oxidase in Tomato Internode Elongation. The Plant Journal : For Cell and Molecular Biology. PMID 30394600 DOI: 10.1111/Tpj.14145  0.601
2018 Nozue K, Devisetty UK, Lekkala S, Mueller-Moule P, Bak A, Casteel CL, Maloof JN. Network analysis reveals a role for salicylic acid pathway components in shade avoidance. Plant Physiology. PMID 30348816 DOI: 10.1104/Pp.18.00920  0.305
2017 Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, ... ... Maloof JN, et al. Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Frontiers in Plant Science. 8: 900. PMID 28659934 DOI: 10.3389/Fpls.2017.00900  0.672
2017 Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN. Using RNA-seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population. G3 (Bethesda, Md.). PMID 28546385 DOI: 10.1534/g3.117.043000  0.687
2017 Filiault DL, Seymour DK, Maruthachalam R, Maloof JN. The Generation of Doubled Haploid Lines for QTL Mapping. Methods in Molecular Biology (Clifton, N.J.). 1610: 39-57. PMID 28439856 DOI: 10.1007/978-1-4939-7003-2_4  0.777
2016 Kohnen M, Schmid-Siegert E, Trevisan M, Allenbach Petrolati L, Sénéchal F, Müller-Moulé P, Maloof JN, Xenarios I, Fankhauser C. Neighbor Detection Induces Organ-specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-specific Growth. The Plant Cell. PMID 27923878 DOI: 10.1105/Tpc.16.00463  0.583
2016 Müller-Moulé P, Nozue K, Pytlak ML, Palmer CM, Covington MF, Wallace AD, Harmer SL, Maloof JN. YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance. Peerj. 4: e2574. PMID 27761349 DOI: 10.7717/Peerj.2574  0.69
2016 Schrager-Lavelle A, Herrera LA, Maloof JN. Tomato phyE Is Required for Shade Avoidance in the Absence of phyB1 and phyB2. Frontiers in Plant Science. 7: 1275. PMID 27695458 DOI: 10.3389/fpls.2016.01275  0.319
2016 Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR. A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification. G3 (Bethesda, Md.). PMID 27510891 DOI: 10.1534/G3.116.030536  0.699
2016 Ranjan A, Budke J, Rowland SD, Chitwood DH, Kumar R, Carriedo LG, Ichihashi Y, Zumstein K, Maloof JN, Sinha N. eQTL regulating Transcript Levels Associated with Diverse Biological Processes in Tomato. Plant Physiology. PMID 27418589 DOI: 10.1104/Pp.16.00289  0.411
2016 Corwin JA, Copeland D, Feusier J, Subedy A, Eshbaugh R, Palmer C, Maloof J, Kliebenstein DJ. The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics. Plos Genetics. 12: e1005789. PMID 26866607 DOI: 10.1371/Journal.Pgen.1005789  0.383
2016 Brock MT, Lucas LK, Anderson NA, Rubin MJ, Markelz RJ, Covington MF, Devisetty UK, Chapple C, Maloof JN, Weinig C. Genetic architecture, biochemical underpinnings, and ecological impact of floral UV patterning. Molecular Ecology. PMID 26800256 DOI: 10.1111/Mec.13542  0.687
2016 An N, Palmer CM, Baker RL, Markelz RJC, Ta J, Covington MF, Maloof JN, Welch SM, Weinig C. Plant high-throughput phenotyping using photogrammetry and imaging techniques to measure leaf length and rosette area Computers and Electronics in Agriculture. 127: 376-394. DOI: 10.1016/J.Compag.2016.04.002  0.684
2015 Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM. Domestication selected for deceleration of the circadian clock in cultivated tomato. Nature Genetics. PMID 26569124 DOI: 10.1038/Ng.3447  0.731
2015 Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley B, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha N. Light-induced indeterminacy alters shade avoiding tomato leaf morphology. Plant Physiology. PMID 26381315 DOI: 10.1104/Pp.15.01229  0.358
2015 Rellán-Álvarez R, Lobet G, Lindner H, Pradier PL, Sebastian J, Yee MC, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR. GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems. Elife. 4. PMID 26287479 DOI: 10.7554/Elife.07597  0.664
2015 Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ. Reassess the t Test: Interact with All Your Data via ANOVA. The Plant Cell. 27: 2088-94. PMID 26220933 DOI: 10.1105/Tpc.15.00238  0.614
2015 Baker RL, Leong WF, Brock MT, Markelz RJ, Covington MF, Devisetty UK, Edwards CE, Maloof J, Welch S, Weinig C. Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape. The New Phytologist. PMID 26083847 DOI: 10.1111/Nph.13509  0.739
2015 Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN. Shade avoidance components and pathways in adult plants revealed by phenotypic profiling. Plos Genetics. 11: e1004953. PMID 25874869 DOI: 10.1371/Journal.Pgen.1004953  0.393
2015 Rellán-Álvarez R, Lobet G, Lindner H, Pradier P, Sebastian J, Yee M, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR. Author response: GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems Elife. DOI: 10.7554/Elife.07597.058  0.61
2014 Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR. Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. The Plant Cell. 26: 3616-29. PMID 25271240 DOI: 10.1105/Tpc.114.130112  0.328
2014 Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN. Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. G3 (Bethesda, Md.). 4: 2065-78. PMID 25122667 DOI: 10.1534/g3.114.012526  0.694
2014 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, ... ... Maloof JN, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046  0.789
2014 Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiology. 165: 175-85. PMID 24623850 DOI: 10.1104/Pp.113.233213  0.742
2014 Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, et al. A modern ampelography: a genetic basis for leaf shape and venation patterning in grape. Plant Physiology. 164: 259-72. PMID 24285849 DOI: 10.1104/Pp.113.229708  0.707
2013 Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR. A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. The Plant Cell. 25: 2465-81. PMID 23872539 DOI: 10.1105/Tpc.113.112391  0.698
2013 Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, ... ... Maloof JN, et al. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America. 110: E2655-62. PMID 23803858 DOI: 10.1073/Pnas.1309606110  0.796
2013 Sharlach M, Dahlbeck D, Liu L, Chiu J, Jiménez-Gómez JM, Kimura S, Koenig D, Maloof JN, Sinha N, Minsavage GV, Jones JB, Stall RE, Staskawicz BJ. Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 601-9. PMID 23117718 DOI: 10.1007/S00122-012-2004-6  0.683
2012 Filiault DL, Maloof JN. A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. Plos Genetics. 8: e1002589. PMID 22438834 DOI: 10.1371/Journal.Pgen.1002589  0.783
2012 Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN. Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proceedings of the National Academy of Sciences of the United States of America. 109: 4227-32. PMID 22371599 DOI: 10.1073/Pnas.1117277109  0.789
2012 Chitwood DH, Headland LR, Filiault DL, Kumar R, Jiménez-Gómez JM, Schrager AV, Park DS, Peng J, Sinha NR, Maloof JN. Native environment modulates leaf size and response to simulated foliar shade across wild tomato species. Plos One. 7: e29570. PMID 22253737 DOI: 10.1371/Journal.Pone.0029570  0.788
2011 Jimenez-Gomez JM, Corwin JA, Joseph B, Maloof JN, Kliebenstein DJ. Genomic analysis of QTLs and genes altering natural variation in stochastic noise. Plos Genetics. 7: e1002295. PMID 21980300 DOI: 10.1371/Journal.Pgen.1002295  0.695
2011 Holtan HE, Bandong S, Marion CM, Adam L, Tiwari S, Shen Y, Maloof JN, Maszle DR, Ohto MA, Preuss S, Meister R, Petracek M, Repetti PP, Reuber TL, Ratcliffe OJ, et al. BBX32, an Arabidopsis B-Box protein, functions in light signaling by suppressing HY5-regulated gene expression and interacting with STH2/BBX21. Plant Physiology. 156: 2109-23. PMID 21632973 DOI: 10.1104/Pp.111.177139  0.303
2011 Stewart JL, Maloof JN, Nemhauser JL. PIF genes mediate the effect of sucrose on seedling growth dynamics. Plos One. 6: e19894. PMID 21625438 DOI: 10.1371/journal.pone.0019894  0.657
2011 Arana MV, Marín-de la Rosa N, Maloof JN, Blázquez MA, Alabadí D. Circadian oscillation of gibberellin signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 108: 9292-7. PMID 21576475 DOI: 10.1073/Pnas.1101050108  0.588
2011 Nozue K, Harmer SL, Maloof JN. Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis. Plant Physiology. 156: 357-72. PMID 21430186 DOI: 10.1104/pp.111.172684  0.325
2011 Chang CS, Maloof JN, Wu SH. COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis. Plant Physiology. 156: 228-39. PMID 21427283 DOI: 10.1104/pp.111.175042  0.318
2011 Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ. Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis. The Plant Cell. 23: 471-85. PMID 21343415 DOI: 10.1105/Tpc.110.082065  0.724
2010 Maloof JN. Recent advances in regulation of flowering. F1000 Biology Reports. 2. PMID 20948781 DOI: 10.3410/B2-9  0.33
2010 Jiménez-Gómez JM, Wallace AD, Maloof JN. Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis. Plos Genetics. 6: e1001100. PMID 20838594 DOI: 10.1371/Journal.Pgen.1001100  0.748
2010 Brock MT, Dechaine JM, Iniguez-Luy FL, Maloof JN, Stinchcombe JR, Weinig C. Floral genetic architecture: an examination of QTL architecture underlying floral (co)variation across environments. Genetics. 186: 1451-65. PMID 20837996 DOI: 10.1534/Genetics.110.119982  0.33
2010 Brock MT, Maloof JN, Weinig C. Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana. Molecular Ecology. 19: 1187-99. PMID 20456226 DOI: 10.1111/J.1365-294X.2010.04538.X  0.354
2009 Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 183: 723-32, 1SI-7SI. PMID 19652183 DOI: 10.1534/Genetics.109.104984  0.822
2009 Jiménez-Gómez JM, Maloof JN. Sequence diversity in three tomato species: SNPs, markers, and molecular evolution. Bmc Plant Biology. 9: 85. PMID 19575805 DOI: 10.1186/1471-2229-9-85  0.679
2009 Jiménez-Gómez JM, Maloof JN. Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment. Embo Reports. 10: 568-72. PMID 19465891 DOI: 10.1038/embor.2009.116  0.692
2009 Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. Plos One. 4: e4318. PMID 19183806 DOI: 10.1371/Journal.Pone.0004318  0.768
2008 Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biology. 9: R130. PMID 18710561 DOI: 10.1186/Gb-2008-9-8-R130  0.692
2008 Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proceedings of the National Academy of Sciences of the United States of America. 105: 3157-62. PMID 18287016 DOI: 10.1073/Pnas.0712174105  0.792
2007 Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, Harmer SL, Maloof JN. Rhythmic growth explained by coincidence between internal and external cues. Nature. 448: 358-61. PMID 17589502 DOI: 10.1038/Nature05946  0.745
2006 Nozue K, Maloof JN. Diurnal regulation of plant growth. Plant, Cell & Environment. 29: 396-408. PMID 17080594  0.325
2006 Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics. 38: 711-5. PMID 16732287 DOI: 10.1038/Ng1818  0.82
2004 Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics. 167: 907-17. PMID 15238539 DOI: 10.1534/Genetics.103.024810  0.825
2003 Maloof JN. Genomic approaches to analyzing natural variation in Arabidopsis thaliana. Current Opinion in Genetics & Development. 13: 576-82. PMID 14638317  0.391
2003 Nemhauser JL, Maloof JN, Chory J. Building integrated models of plant growth and development. Plant Physiology. 132: 436-9. PMID 12805576 DOI: 10.1104/Pp.102.017061  0.671
2003 Maloof JN. QTL for plant growth and morphology. Current Opinion in Plant Biology. 6: 85-90. PMID 12495756  0.428
2002 Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth Genetics. 162: 1445-1456. PMID 12454087  0.787
2002 Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics. 160: 683-96. PMID 11861571  0.769
2002 Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/Ng813  0.747
2001 Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J. Natural variation in light sensitivity of Arabidopsis. Nature Genetics. 29: 441-6. PMID 11726931 DOI: 10.1038/Ng777  0.776
2000 Maloof JN, Borevitz JO, Weigel D, Chory J. Natural variation in phytochrome signaling. Seminars in Cell & Developmental Biology. 11: 523-30. PMID 11145882 DOI: 10.1006/Scdb.2000.0198  0.765
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