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Joanna C. Chiu, Ph.D. - Publications

Affiliations: 
1998-2004 Biology New York University 
 2004-2010 Center for Advanced Biotechnology and Medicine Rutgers University, New Brunswick, New Brunswick, NJ, United States 
 2010- Entomology University of California, Davis, Davis, CA 
Area:
Plant Physiology, Molecular Biology, Genetics, Drosophila Genetics, Neuroscience
Website:
https://www.clocklab.org/
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu X, Cai YD, Chiu JC. Regulation of protein O-GlcNAcylation by circadian, metabolic, and cellular signals. The Journal of Biological Chemistry. 105616. PMID 38159854 DOI: 10.1016/j.jbc.2023.105616  0.602
2023 Wei Q, Feng ZL, Cai YD, He JC, Lai FX, Wan PJ, Wang WX, Yao Q, Chiu JC, Fu Q. Characterization of light-dependent rhythm of courtship vibrational signals in Nilaparvata lugens: Essential involvement of cryptochrome genes. Pest Management Science. PMID 37735824 DOI: 10.1002/ps.7782  0.65
2023 Hidalgo S, Chiu JC. Integration of photoperiodic and temperature cues by the circadian clock to regulate insect seasonal adaptations. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. PMID 37584703 DOI: 10.1007/s00359-023-01667-1  0.306
2023 Philpott JM, Freeberg AM, Park J, Lee K, Ricci CG, Hunt SR, Narasimamurthy R, Segal DH, Robles R, Cai Y, Tripathi S, McCammon JA, Virshup DM, Chiu JC, Lee C, et al. PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period. Molecular Cell. 83: 1677-1692.e8. PMID 37207626 DOI: 10.1016/j.molcel.2023.04.019  0.612
2023 Lewald KM, Song W, Eweis-LaBolle D, Truong C, Godfrey KE, Chiu JC. Probe-based quantitative PCR and RPA-Cas12a molecular diagnostics for detection of the tomato pest Phthorimaea absoluta (Lepidoptera: Gelechiidae). Journal of Economic Entomology. PMID 37177893 DOI: 10.1093/jee/toad079  0.756
2023 Lewald KM, Tabuloc CA, Godfrey KE, Arnó J, Perini CR, Guedes JC, Chiu JC. Genome assembly and population sequencing reveal three populations and signatures of insecticide resistance of Tuta absoluta in Latin America. Genome Biology and Evolution. PMID 37071791 DOI: 10.1093/gbe/evad060  0.762
2023 Pelham JF, Mosier AE, Altshuler SC, Rhodes ML, Kirchhoff CL, Fall WB, Mann C, Baik LS, Chiu JC, Hurley JM. Conformational changes in the negative arm of the circadian clock correlate with dynamic interactomes involved in post-transcriptional regulation. Cell Reports. 42: 112376. PMID 37043358 DOI: 10.1016/j.celrep.2023.112376  0.806
2023 Hidalgo S, Anguiano M, Tabuloc CA, Chiu JC. Seasonal cues act through the circadian clock and pigment-dispersing factor to control EYES ABSENT and downstream physiological changes. Current Biology : Cb. 33: 1006-1008. PMID 36917930 DOI: 10.1016/j.cub.2023.02.028  0.778
2023 Tabuloc CA, Cai YD, Kwok RS, Chan EC, Hidalgo S, Chiu JC. CLOCK and TIMELESS regulate rhythmic occupancy of the BRAHMA chromatin-remodeling protein at clock gene promoters. Plos Genetics. 19: e1010649. PMID 36809369 DOI: 10.1371/journal.pgen.1010649  0.797
2023 Hidalgo S, Anguiano M, Tabuloc CA, Chiu JC. Seasonal cues act through the circadian clock and pigment-dispersing factor to control EYES ABSENT and downstream physiological changes. Current Biology : Cb. PMID 36708710 DOI: 10.1016/j.cub.2023.01.006  0.811
2022 Liu X, Chiu JC. Nutrient-sensitive protein O-GlcNAcylation shapes daily biological rhythms. Open Biology. 12: 220215. PMID 36099933 DOI: 10.1098/rsob.220215  0.703
2022 Joshi R, Cai YD, Xia Y, Chiu JC, Emery P. PERIOD Phosphoclusters Control Temperature Compensation of the Circadian Clock. Frontiers in Physiology. 13: 888262. PMID 35721569 DOI: 10.3389/fphys.2022.888262  0.58
2021 Cai YD, Chiu JC. Timeless in animal circadian clocks and beyond. The Febs Journal. PMID 34699674 DOI: 10.1111/febs.16253  0.67
2021 Lewald KM, Abrieux A, Wilson DA, Lee Y, Conner WR, Andreazza F, Beers EH, Burrack HJ, Daane KM, Diepenbrock L, Drummond FA, Fanning PD, Gaffney MT, Hesler SP, Ioriatti C, ... ... Chiu JC, et al. Population genomics of Drosophila suzukii reveal longitudinal population structure and signals of migrations in and out of the continental United States. G3 (Bethesda, Md.). PMID 34599814 DOI: 10.1093/g3journal/jkab343  0.765
2021 Tait G, Mermer S, Stockton D, Lee J, Avosani S, Abrieux A, Anfora G, Beers E, Biondi A, Burrack H, Cha D, Chiu JC, Choi MY, Cloonan K, Crava CM, et al. Drosophila suzukii (Diptera: Drosophilidae): A Decade of Research Towards a Sustainable Integrated Pest Management Program. Journal of Economic Entomology. PMID 34516634 DOI: 10.1093/jee/toab158  0.771
2021 Liu X, Blaženović I, Contreras AJ, Pham TM, Tabuloc CA, Li YH, Ji J, Fiehn O, Chiu JC. Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. Nature Communications. 12: 4173. PMID 34234137 DOI: 10.1038/s41467-021-24301-7  0.768
2021 Durkin SM, Chakraborty M, Abrieux A, Lewald KM, Gadau A, Svetec N, Peng J, Kopyto M, Langer CB, Chiu JC, Emerson JJ, Zhao L. Behavioral and genomic sensory adaptations underlying the pest activity of Drosophila suzukii. Molecular Biology and Evolution. PMID 33586767 DOI: 10.1093/molbev/msab048  0.77
2020 Cai YD, Xue Y, Truong CC, Del Carmen-Li J, Ochoa C, Vanselow JT, Murphy KA, Li YH, Liu X, Kunimoto BL, Zheng H, Zhao C, Zhang Y, Schlosser A, Chiu JC. CK2 Inhibits TIMELESS Nuclear Export and Modulates CLOCK Transcriptional Activity to Regulate Circadian Rhythms. Current Biology : Cb. PMID 33217322 DOI: 10.1016/j.cub.2020.10.061  0.789
2020 Perini CR, Tabuloc CA, Chiu JC, Zalom FG, Stacke RF, Bernardi O, Nelson DR, Guedes JC. Transcriptome Analysis of Pyrethroid-Resistant Chrysodeixis includens (Lepidoptera: Noctuidae) Reveals Overexpression of Metabolic Detoxification Genes. Journal of Economic Entomology. PMID 33137187 DOI: 10.1093/jee/toaa233  0.772
2020 Abrieux A, Xue Y, Cai Y, Lewald KM, Nguyen HN, Zhang Y, Chiu JC. EYES ABSENT and TIMELESS integrate photoperiodic and temperature cues to regulate seasonal physiology in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32541062 DOI: 10.1073/Pnas.2004262117  0.777
2019 Xue Y, Chiu JC, Zhang Y. SUR-8 interacts with PP1-87B to stabilize PERIOD and regulate circadian rhythms in Drosophila. Plos Genetics. 15: e1008475. PMID 31710605 DOI: 10.1371/Journal.Pgen.1008475  0.406
2019 Liu Z, Tabuloc CA, Xue Y, Cai Y, Mcintire P, Niu Y, Lam VH, Chiu JC, Zhang Y. Splice variants of DOMINO control Drosophila circadian behavior and pacemaker neuron maintenance. Plos Genetics. 15: e1008474. PMID 31658266 DOI: 10.1371/Journal.Pgen.1008474  0.793
2019 Li YH, Liu X, Vanselow JT, Zheng H, Schlosser A, Chiu JC. O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression. Plos Genetics. 15: e1007953. PMID 30703153 DOI: 10.1371/Journal.Pgen.1007953  0.767
2019 Tabuloc CA, Lewald KM, Conner WR, Lee Y, Lee EK, Cain AB, Godfrey KE, Arnó J, Agustí N, Perini CR, Guedes JC, Zalom FG, Chiu JC. Sequencing of Tuta absoluta genome to develop SNP genotyping assays for species identification Journal of Pest Science. 92: 1397-1407. DOI: 10.1007/S10340-019-01116-6  0.754
2018 Lam VH, Li YH, Liu X, Murphy KA, Diehl JS, Kwok RS, Chiu JC. CK1α collaborates with DOUBLETIME to regulate PERIOD function in the circadian clock. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30373768 DOI: 10.1523/Jneurosci.0871-18.2018  0.793
2018 Battenberg K, Potter D, Tabuloc CA, Chiu JC, Berry AM. Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms. Frontiers in Plant Science. 9: 1256. PMID 30349546 DOI: 10.3389/Fpls.2018.01256  0.794
2018 Turelli M, Cooper BS, Richardson KM, Ginsberg PS, Peckenpaugh B, Antelope CX, Kim KJ, May MR, Abrieux A, Wilson DA, Bronski MJ, Moore BR, Gao JJ, Eisen MB, Chiu JC, et al. Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila. Current Biology : Cb. PMID 29526588 DOI: 10.1016/J.Cub.2018.02.015  0.773
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.327
2017 Mishra R, Chiu JC, Hua G, Tawari NR, Adang MJ, Sial AA. High throughput sequencing reveals Drosophila suzukii responses to insecticides. Insect Science. PMID 28636268 DOI: 10.1111/1744-7917.12498  0.346
2017 Freedman MG, Dingle H, Tabuloc CA, Chiu JC, Yang LH, Zalucki MP. Non-migratory monarch butterflies, Danaus plexippus (L.), retain developmental plasticity and a navigational mechanism associated with migration Biological Journal of the Linnean Society. 123: 265-278. DOI: 10.1093/Biolinnean/Blx148  0.79
2016 Abrieux A, Chiu JC. Oral delivery of dsRNA by microbes: Beyond pest control. Communicative & Integrative Biology. 9: e1236163. PMID 28042376 DOI: 10.1080/19420889.2016.1236163  0.779
2016 Fu J, Murphy KA, Zhou M, Li YH, Lam VH, Tabuloc CA, Chiu JC, Liu Y. Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD. Genes & Development. 30: 1761-75. PMID 27542830 DOI: 10.1101/Gad.281030.116  0.798
2016 Wiman NG, Dalton DT, Anfora G, Biondi A, Chiu JC, Daane KM, Gerdeman B, Gottardello A, Hamby KA, Isaacs R, Grassi A, Ioriatti C, Lee JC, Miller B, Stacconi MV, et al. Drosophila suzukii population response to environment and management strategies. Journal of Pest Science. 89: 653-665. PMID 27471438 DOI: 10.1007/S10340-016-0757-4  0.313
2016 Shearer PW, West JD, Walton VM, Brown PH, Svetec N, Chiu JC. Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival. Bmc Ecology. 16: 11. PMID 27001084 DOI: 10.1186/S12898-016-0070-3  0.693
2016 Murphy KA, Tabuloc CA, Cervantes KR, Chiu JC. Ingestion of genetically modified yeast symbiont reduces fitness of an insect pest via RNA interference. Scientific Reports. 6: 22587. PMID 26931800 DOI: 10.1038/Srep22587  0.774
2016 Kwok RS, Lam VH, Chiu JC. Understanding the role of chromatin remodeling in the regulation of circadian transcription in Drosophila. Fly. 0. PMID 26926115 DOI: 10.1080/19336934.2016.1143993  0.802
2016 Maliti DV, Marsden CD, Main BJ, Govella NJ, Yamasaki Y, Collier TC, Kreppel K, Chiu JC, Lanzaro GC, Ferguson HM, Lee Y. Investigating associations between biting time in the malaria vector Anopheles arabiensis Patton and single nucleotide polymorphisms in circadian clock genes: support for sub-structure among An. arabiensis in the Kilombero valley of Tanzania. Parasites & Vectors. 9: 109. PMID 26920563 DOI: 10.1186/S13071-016-1394-8  0.339
2016 Jasper WC, Linksvayer TA, Atallah J, Friedman D, Chiu JC, Johnson BR. Large Scale Coding Sequence Change Underlies the Evolution of Postdevelopmental Novelty in Honey Bees. Molecular Biology and Evolution. PMID 26912809 DOI: 10.1093/Molbev/Msw022  0.342
2016 Hamby KA, E. Bellamy D, Chiu JC, Lee JC, Walton VM, Wiman NG, York RM, Biondi A. Biotic and abiotic factors impacting development, behavior, phenology, and reproductive biology of Drosophila suzukii Journal of Pest Science. 1-15. DOI: 10.1007/S10340-016-0756-5  0.322
2016 Murphy KA, West JD, Kwok RS, Chiu JC. Accelerating research on Spotted Wing Drosophila management using genomic technologies Journal of Pest Science. 1-11. DOI: 10.1007/S10340-016-0741-Z  0.782
2015 Yildirim E, Chiu JC, Edery I. Identification of light-sensitive phosphorylation sites on PERIOD that regulate the pace of circadian rhythms in Drosophila. Molecular and Cellular Biology. PMID 26711257 DOI: 10.1128/Mcb.00682-15  0.699
2015 Borowiec ML, Lee EK, Chiu JC, Plachetzki DC. Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa. Bmc Genomics. 16: 987. PMID 26596625 DOI: 10.1186/S12864-015-2146-4  0.32
2015 Kwok RS, Li YH, Lei AJ, Edery I, Chiu JC. The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila. Plos Genetics. 11: e1005307. PMID 26132408 DOI: 10.1371/Journal.Pgen.1005307  0.812
2015 Svetec N, Zhao L, Saelao P, Chiu JC, Begun DJ. Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. Bmc Evolutionary Biology. 15: 41. PMID 25887180 DOI: 10.1186/S12862-015-0316-2  0.361
2015 Murphy KA, Unruh TR, Zhou LM, Zalom FG, Shearer PW, Beers EH, Walton VM, Miller B, Chiu JC. Using comparative genomics to develop a molecular diagnostic for the identification of an emerging pest Drosophila suzukii. Bulletin of Entomological Research. 105: 364-72. PMID 25804294 DOI: 10.1017/S0007485315000218  0.614
2015 Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Chiu JC, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522  0.622
2013 Chiu JC, Jiang X, Zhao L, Hamm CA, Cridland JM, Saelao P, Hamby KA, Lee EK, Kwok RS, Zhang G, Zalom FG, Walton VM, Begun DJ. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda, Md.). 3: 2257-71. PMID 24142924 DOI: 10.1534/G3.113.008185  0.756
2013 Johnson BR, Borowiec ML, Chiu JC, Lee EK, Atallah J, Ward PS. Phylogenomics resolves evolutionary relationships among ants, bees, and wasps. Current Biology : Cb. 23: 2058-62. PMID 24094856 DOI: 10.1016/J.Cub.2013.11.056  0.306
2013 Hamby KA, Kwok RS, Zalom FG, Chiu JC. Integrating circadian activity and gene expression profiles to predict chronotoxicity of Drosophila suzukii response to insecticides. Plos One. 8: e68472. PMID 23861907 DOI: 10.1371/Journal.Pone.0068472  0.782
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411  0.774
2011 Chiu JC, Ko HW, Edery I. NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed. Cell. 145: 357-70. PMID 21514639 DOI: 10.1016/J.Cell.2011.04.002  0.742
2011 Chiu JC, Ko HW, Edery I. Erratum: NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed (Cell (2011) 145 (357-370)) Cell. 145. DOI: 10.1016/J.Cell.2011.04.023  0.727
2010 Chiu JC, Low KH, Pike DH, Yildirim E, Edery I. Assaying locomotor activity to study circadian rhythms and sleep parameters in Drosophila. Journal of Visualized Experiments : Jove. PMID 20972399 DOI: 10.3791/2157  0.734
2010 Ko HW, Kim EY, Chiu J, Vanselow JT, Kramer A, Edery I. A hierarchical phosphorylation cascade that regulates the timing of PERIOD nuclear entry reveals novel roles for proline-directed kinases and GSK-3beta/SGG in circadian clocks. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12664-75. PMID 20861372 DOI: 10.1523/Jneurosci.1586-10.2010  0.751
2009 Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R. Gene orthology assessment with OrthologID. Methods in Molecular Biology (Clifton, N.J.). 537: 23-38. PMID 19378138 DOI: 10.1007/978-1-59745-251-9_2  0.569
2008 Chiu JC, Vanselow JT, Kramer A, Edery I. The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock. Genes & Development. 22: 1758-72. PMID 18593878 DOI: 10.1101/Gad.1682708  0.66
2006 Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (Oxford, England). 22: 699-707. PMID 16410324 DOI: 10.1093/Bioinformatics/Btk040  0.594
2002 Chiu JC, Brenner ED, DeSalle R, Nitabach MN, Holmes TC, Coruzzi GM. Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana. Molecular Biology and Evolution. 19: 1066-82. PMID 12082126 DOI: 10.1093/Oxfordjournals.Molbev.A004165  0.751
2001 Lacombe B, Becker D, Hedrich R, DeSalle R, Hollmann M, Kwak JM, Schroeder JI, Le Novère N, Nam HG, Spalding EP, Tester M, Turano FJ, Chiu J, Coruzzi G. The identity of plant glutamate receptors. Science (New York, N.Y.). 292: 1486-7. PMID 11379626 DOI: 10.1126/Science.292.5521.1486B  0.593
2001 Oliveira IC, Brenner E, Chiu J, Hsieh MH, Kouranov A, Lam HM, Shin MJ, Coruzzi G. Metabolite and light regulation of metabolism in plants: lessons from the study of a single biochemical pathway. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Mã©Dicas E Biolã³Gicas / Sociedade Brasileira De Biofã­Sica ... [Et Al.]. 34: 567-75. PMID 11323742 DOI: 10.1590/S0100-879X2001000500003  0.774
1999 Chiu J, DeSalle R, Lam HM, Meisel L, Coruzzi G. Molecular evolution of glutamate receptors: A primitive signaling mechanism that existed before plants and animals diverged Molecular Biology and Evolution. 16: 826-838. PMID 10368960 DOI: 10.1093/Oxfordjournals.Molbev.A026167  0.785
1998 Lam HM, Chiu J, Hsieh MH, Meisel L, Oliveira IC, Shin M, Coruzzi G. Glutamate-receptor genes in plants [5] Nature. 396: 125-126. PMID 9823891 DOI: 10.1038/24066  0.761
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