Peter G. Foster, Ph.D. - Publications

Affiliations: 
Natural History Museum, London 

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Phylogenomics provides robust support for a two-domains tree of life. Nature Ecology & Evolution. PMID 31819234 DOI: 10.1038/s41559-019-1040-x  1
2018 de Sousa F, Foster PG, Donoghue PCJ, Schneider H, Cox CJ. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.). The New Phytologist. PMID 30411803 DOI: 10.1111/nph.15587  1
2017 Williams TA, Szöllősi GJ, Spang A, Foster PG, Heaps SE, Boussau B, Ettema TJG, Embley TM. Integrative modeling of gene and genome evolution roots the archaeal tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 28533395 DOI: 10.1073/pnas.1618463114  0.68
2016 Maddock ST, Briscoe AG, Wilkinson M, Waeschenbach A, San Mauro D, Day JJ, Littlewood DT, Foster PG, Nussbaum RA, Gower DJ. Next-Generation Mitogenomics: A Comparison of Approaches Applied to Caecilian Amphibian Phylogeny. Plos One. 11: e0156757. PMID 27280454 DOI: 10.1371/journal.pone.0156757  1
2015 Demari-Silva B, Foster PG, de Oliveira TM, Bergo ES, Sanabani SS, Pessôa R, Sallum MA. Mitochondrial genomes and comparative analyses of Culex camposi, Culex coronator, Culex usquatus and Culex usquatissimus (Diptera:Culicidae), members of the coronator group. Bmc Genomics. 16: 831. PMID 26489754 DOI: 10.1186/s12864-015-1951-0  1
2015 Akanni WA, Wilkinson M, Creevey CJ, Foster PG, Pisani D. Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics. Royal Society Open Science. 2: 140436. PMID 26361544 DOI: 10.1098/rsos.140436  1
2015 Akanni WA, Siu-Ting K, Creevey CJ, McInerney JO, Wilkinson M, Foster PG, Pisani D. Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140337. PMID 26323767 DOI: 10.1098/rstb.2014.0337  1
2014 Jabbar A, Littlewood DT, Mohandas N, Briscoe AG, Foster PG, Müller F, von Samson-Himmelstjerna G, Jex AR, Gasser RB. The mitochondrial genome of Parascaris univalens--implications for a "forgotten" parasite. Parasites & Vectors. 7: 428. PMID 25190631 DOI: 10.1186/1756-3305-7-428  1
2014 Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins. Molecular Biology and Evolution. 31: 1697-709. PMID 24795089 DOI: 10.1093/molbev/msu105  1
2014 Civaň P, Foster PG, Embley MT, Séneca A, Cox CJ. Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants. Genome Biology and Evolution. 6: 897-911. PMID 24682153 DOI: 10.1093/gbe/evu061  1
2014 Lloyd RE, Streeter SD, Foster PG, Littlewood DT, Huntley J, Beckham GT, Himmel ME, Cragg SM. The complete mitochondrial genome of Limnoria quadripunctata Holthuis (Isopoda: Limnoriidae). Mitochondrial Dna. PMID 24409843 DOI: 10.3109/19401736.2013.855912  1
2014 Cox CJ, Li B, Foster PG, Embley TM, Civán P. Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions. Systematic Biology. 63: 272-9. PMID 24399481 DOI: 10.1093/sysbio/syt109  1
2014 Williams ST, Foster PG, Littlewood DT. The complete mitochondrial genome of a turbinid vetigastropod from MiSeq Illumina sequencing of genomic DNA and steps towards a resolved gastropod phylogeny. Gene. 533: 38-47. PMID 24120625 DOI: 10.1016/j.gene.2013.10.005  1
2014 Lewis CJ, Maddock ST, Day JJ, Nussbaum RA, Morel C, Wilkinson M, Foster PG, Gower DJ. Development of anonymous nuclear markers from Illumina paired-end data for Seychelles caecilian amphibians (Gymnophiona: Indotyphlidae) Conservation Genetics Resources. 6: 289-291. DOI: 10.1007/s12686-013-0127-y  1
2013 Williams TA, Foster PG, Cox CJ, Embley TM. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 504: 231-6. PMID 24336283 DOI: 10.1038/nature12779  1
2013 Nakjang S, Williams TA, Heinz E, Watson AK, Foster PG, Sendra KM, Heaps SE, Hirt RP, Martin Embley T. Reduction and expansion in microsporidian genome evolution: new insights from comparative genomics. Genome Biology and Evolution. 5: 2285-303. PMID 24259309 DOI: 10.1093/gbe/evt184  1
2013 Morgan CC, Foster PG, Webb AE, Pisani D, McInerney JO, O'Connell MJ. Heterogeneous models place the root of the placental mammal phylogeny. Molecular Biology and Evolution. 30: 2145-56. PMID 23813979 DOI: 10.1093/molbev/mst117  1
2013 Baselga A, Fujisawa T, Crampton-Platt A, Bergsten J, Foster PG, Monaghan MT, Vogler AP. Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels. Nature Communications. 4: 1892. PMID 23695686 DOI: 10.1038/ncomms2881  1
2013 Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 68: 218-20. PMID 23567023 DOI: 10.1016/j.ympev.2013.03.030  1
2013 Alsmark C, Foster PG, Sicheritz-Ponten T, Nakjang S, Martin Embley T, Hirt RP. Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. Genome Biology. 14: R19. PMID 23442822 DOI: 10.1186/gb-2013-14-2-r19  1
2013 Foster PG, Bergo ES, Bourke BP, Oliveira TM, Nagaki SS, Sant'Ana DC, Sallum MA. Phylogenetic analysis and DNA-based species confirmation in Anopheles (Nyssorhynchus). Plos One. 8: e54063. PMID 23390494 DOI: 10.1371/journal.pone.0054063  1
2012 Williams TA, Foster PG, Nye TM, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings. Biological Sciences / the Royal Society. 279: 4870-9. PMID 23097517 DOI: 10.1098/rspb.2012.1795  1
2012 Lloyd RE, Foster PG, Guille M, Littlewood DT. Next generation sequencing and comparative analyses of Xenopus mitogenomes. Bmc Genomics. 13: 496. PMID 22992290 DOI: 10.1186/1471-2164-13-496  1
2011 Richards TA, Soanes DM, Jones MD, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ. Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proceedings of the National Academy of Sciences of the United States of America. 108: 15258-63. PMID 21878562 DOI: 10.1073/pnas.1105100108  1
2010 Sallum MA, Foster PG, Dos Santos CL, Flores DC, Motoki MT, Bergo ES. Resurrection of two species from synonymy of Anopheles (Nyssorhynchus) strodei Root, and characterization of a distinct morphological form from the Strodei Complex (Diptera: Culicidae). Journal of Medical Entomology. 47: 504-26. PMID 20695266 DOI: 10.1603/ME09229  1
2010 Bourke BP, Foster PG, Bergo ES, Calado DC, Sallum MA. Phylogenetic relationships among species of Anopheles (Nyssorhynchus) (Diptera, Culicidae) based on nuclear and mitochondrial gene sequences. Acta Tropica. 114: 88-96. PMID 20117069 DOI: 10.1016/j.actatropica.2010.01.009  1
2010 de Souza RP, Foster PG, Sallum MA, Coimbra TL, Maeda AY, Silveira VR, Moreno ES, da Silva FG, Rocco IM, Ferreira IB, Suzuki A, Oshiro FM, Petrella SM, Pereira LE, Katz G, et al. Detection of a new yellow fever virus lineage within the South American genotype I in Brazil. Journal of Medical Virology. 82: 175-85. PMID 19950229 DOI: 10.1002/jmv.21606  1
2009 Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ. Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. The Plant Cell. 21: 1897-911. PMID 19584142 DOI: 10.1105/tpc.109.065805  1
2009 Foster PG, Cox CJ, Embley TM. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2197-207. PMID 19571240 DOI: 10.1098/rstb.2009.0034  1
2009 Alsmark UC, Sicheritz-Ponten T, Foster PG, Hirt RP, Embley TM. Horizontal gene transfer in eukaryotic parasites: a case study of Entamoeba histolytica and Trichomonas vaginalis. Methods in Molecular Biology (Clifton, N.J.). 532: 489-500. PMID 19271203 DOI: 10.1007/978-1-60327-853-9_28  1
2008 Calado DC, Foster PG, Bergo ES, Santos CL, Galardo AK, Sallum MA. Resurrection of Anopheles goeldii from synonymy with Anopheles nuneztovari (Diptera, Culicidae) and a new record for Anopheles dunhami in the Brazilian Amazon. MemóRias Do Instituto Oswaldo Cruz. 103: 791-9. PMID 19148419  1
2008 Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 20356-61. PMID 19073919 DOI: 10.1073/pnas.0810647105  1
2008 Santos CL, Ishida MA, Foster PG, Sallum MA, Benega MA, Borges DB, Corrêa KO, Constantino CR, Afzal MA, Paiva TM. Detection of a new mumps virus genotype during parotitis epidemic of 2006-2007 in the state of São Paulo, Brazil. Journal of Medical Virology. 80: 323-9. PMID 18098149 DOI: 10.1002/jmv.21068  1
2007 Clark CG, Alsmark UC, Tazreiter M, Saito-Nakano Y, Ali V, Marion S, Weber C, Mukherjee C, Bruchhaus I, Tannich E, Leippe M, Sicheritz-Ponten T, Foster PG, Samuelson J, Noël CJ, et al. Structure and content of the Entamoeba histolytica genome. Advances in Parasitology. 65: 51-190. PMID 18063096 DOI: 10.1016/S0065-308X(07)65002-7  1
2007 Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, et al. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 416-23. PMID 17258514 DOI: 10.1016/j.meegid.2006.12.002  1
2007 Wilkinson M, McInerney JO, Hirt RP, Foster PG, Embley TM. Of clades and clans: terms for phylogenetic relationships in unrooted trees. Trends in Ecology & Evolution. 22: 114-5. PMID 17239486 DOI: 10.1016/j.tree.2007.01.002  1
2007 Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/science.1132894  1
2007 Sallum MAM, Foster PG, Li C, Sithiprasasna R, Wilkerson RC. Phylogeny of the Leucosphyrus Group of Anopheles (Cellia) (Diptera: Culcidae) based on mitochondrial gene sequences Annals of the Entomological Society of America. 100: 27-35. DOI: 10.1603/0013-8746(2007)100[27:POTLGO]2.0.CO;2  1
2007 Longhorn SJ, Foster PG, Vogler AP. The nematode-arthropod clade revisited: Phylogenomic analyses from ribosomal protein genes misled by shared evolutionary biases Cladistics. 23: 130-144. DOI: 10.1111/j.1096-0031.2006.00132.x  1
2006 Richards TA, Dacks JB, Campbell SA, Blanchard JL, Foster PG, McLeod R, Roberts CW. Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements. Eukaryotic Cell. 5: 1517-31. PMID 16963634 DOI: 10.1128/EC.00106-06  1
2006 Andersson JO, Hirt RP, Foster PG, Roger AJ. Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. Bmc Evolutionary Biology. 6: 27. PMID 16551352 DOI: 10.1186/1471-2148-6-27  1
2006 Hughes J, Longhorn SJ, Papadopoulou A, Theodorides K, de Riva A, Mejia-Chang M, Foster PG, Vogler AP. Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles). Molecular Biology and Evolution. 23: 268-78. PMID 16237206 DOI: 10.1093/molbev/msj041  1
2005 Wilkerson RC, Foster PG, Li C, Sallum MA. Molecular Phylogeny of Neotropical Anopheles (Nyssorhynchus) Albitarsis Species Complex (Diptera: Culicidae). Annals of the Entomological Society of America. 98: 918-925. PMID 18079976  1
2005 Hampl V, Horner DS, Dyal P, Kulda J, Flegr J, Foster PG, Embley TM. Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata. Molecular Biology and Evolution. 22: 2508-18. PMID 16120804 DOI: 10.1093/molbev/msi245  1
2005 Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, ... ... Foster PG, et al. The genome of the protist parasite Entamoeba histolytica. Nature. 433: 865-8. PMID 15729342 DOI: 10.1038/nature03291  1
2004 Hrdy I, Hirt RP, Dolezal P, Bardonová L, Foster PG, Tachezy J, Embley TM. Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I. Nature. 432: 618-22. PMID 15577909 DOI: 10.1038/nature03149  1
2004 Foster PG. Modeling compositional heterogeneity. Systematic Biology. 53: 485-95. PMID 15503675 DOI: 10.1080/10635150490445779  1
2004 Santos CL, Sallum MA, Foster PG, Rocco IM. Molecular analysis of the dengue virus type 1 and 2 in Brazil based on sequences of the genomic envelope-nonstructural protein 1 junction region. Revista Do Instituto De Medicina Tropical De SãO Paulo. 46: 145-52. PMID 15286818  1
2003 Embley TM, van der Giezen M, Horner DS, Dyal PL, Bell S, Foster PG. Hydrogenosomes, mitochondria and early eukaryotic evolution. Iubmb Life. 55: 387-95. PMID 14584589 DOI: 10.1080/15216540310001592834  1
2003 Embley TM, van der Giezen M, Horner DS, Dyal PL, Foster P. Mitochondria and hydrogenosomes are two forms of the same fundamental organelle. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 191-201; discussion . PMID 12594927 DOI: 10.1098/rstb.2002.1190  1
2003 Walker G, Silberman JD, Karpov SA, Preisfeld A, Foster P, Frolov AO, Novozhilov Y, Sogin ML. An ultrastructural and molecular study of Hyperamoeba dachnaya, n. sp., and its relationship to the mycetozoan slime moulds European Journal of Protistology. 39: 319-336. DOI: 10.1078/0932-4739-00906  1
2002 Theodorides K, De Riva A, Gómez-Zurita J, Foster PG, Vogler AP. Comparison of EST libraries from seven beetle species: towards a framework for phylogenomics of the Coleoptera. Insect Molecular Biology. 11: 467-75. PMID 12230545 DOI: 10.1046/j.1365-2583.2002.00355.x  1
2002 Wilkinson M, Peres-Neto PR, Foster PG, Moncrieff CB. Type 1 error rates of the parsimony permutation tail probability test. Systematic Biology. 51: 524-7. PMID 12079648 DOI: 10.1080/10635150290069931  1
2002 Sallum MAM, Schultz TR, Foster PG, Aronstein K, Wirtz RA, Wilkerson RC. Phylogeny of Anophelinae (Diptera: Culicidae) based on nuclear ribosomal and mitochondrial DNA sequences Systematic Entomology. 27: 361-382. DOI: 10.1046/j.1365-3113.2002.00182.x  1
2001 Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic Biology. 50: 525-39. PMID 12116651  1
2000 Horner DS, Foster PG, Embley TM. Iron hydrogenases and the evolution of anaerobic eukaryotes. Molecular Biology and Evolution. 17: 1695-709. PMID 11070057  1
1999 Foster PG, Hickey DA. Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. Journal of Molecular Evolution. 48: 284-90. PMID 10093217  1
1997 Foster PG, Jermiin LS, Hickey DA. Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria. Journal of Molecular Evolution. 44: 282-8. PMID 9060394 DOI: 10.1007/PL00006145  1
1996 Jermiin LS, Foster PG, Graur D, Lowe RM, Crozier RH. Unbiased estimation of symmetrical directional mutation pressure from protein-coding DNA. Journal of Molecular Evolution. 42: 476-80. PMID 8642618  1
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