| Year |
Citation |
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| 2016 |
Bakken TE, Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Dalley RA, Royall JJ, Lemon T, Shapouri S, Aiona K, Arnold J, Bennett JL, Bertagnolli D, et al. A comprehensive transcriptional map of primate brain development. Nature. PMID 27409810 DOI: 10.1038/Nature18637 |
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| 2016 |
van Andel T, van der Hoorn B, Stech M, Arostegui SB, Miller J. A quantitative assessment of the vegetation types on the island of St. Eustatius, Dutch Caribbean Global Ecology and Conservation. 7: 59-69. DOI: 10.1016/J.Gecco.2016.05.003 |
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| 2015 |
Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, et al. Canonical genetic signatures of the adult human brain. Nature Neuroscience. PMID 26571460 DOI: 10.1038/Nn.4171 |
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| 2015 |
Schilthuizen M, Vairappan CS, Slade EM, Mann DJ, Miller JA. Specimens as primary data: museums and 'open science'. Trends in Ecology & Evolution. 30: 237-8. PMID 25813120 DOI: 10.1016/J.Tree.2015.03.002 |
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| 2015 |
Sorensen SA, Bernard A, Menon V, Royall JJ, Glattfelder KJ, Desta T, Hirokawa K, Mortrud M, Miller JA, Zeng H, Hohmann JG, Jones AR, Lein ES. Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral Cortex (New York, N.Y. : 1991). 25: 433-49. PMID 24014670 DOI: 10.1093/Cercor/Bht243 |
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| 2014 |
Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K, Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre A, Pombero A, Rubenstein JL, Wakeman WB, ... ... Miller J, et al. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 83: 309-23. PMID 24952961 DOI: 10.1016/J.Neuron.2014.05.033 |
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| 2014 |
Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, et al. Transcriptional landscape of the prenatal human brain. Nature. 508: 199-206. PMID 24695229 DOI: 10.1038/Nature13185 |
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| 2014 |
Miller JA, Menon V, Goldy J, Kaykas A, Lee CK, Smith KA, Shen EH, Phillips JW, Lein ES, Hawrylycz MJ. Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq. Bmc Genomics. 15: 154. PMID 24564186 DOI: 10.1186/1471-2164-15-154 |
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| 2014 |
Goyal MS, Hawrylycz M, Miller JA, Snyder AZ, Raichle ME. Aerobic glycolysis in the human brain is associated with development and neotenous gene expression. Cell Metabolism. 19: 49-57. PMID 24411938 DOI: 10.1016/j.cmet.2013.11.020 |
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| 2014 |
Ramírez MJ, Grismado CJ, Labarque FM, Izquierdo MA, Ledford JM, Miller JA, Haddad CR, Griswold CE. The morphology and relationships of the walking mud spiders of the genus Cryptothele (Araneae: Zodariidae) Zoologischer Anzeiger. 253: 382-393. DOI: 10.1016/J.Jcz.2014.03.002 |
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| 2014 |
Yang C, Wang X, Miller JA, De Blécourt M, Ji Y, Harrison RD, Yu DW. Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator Ecological Indicators. 46: 379-389. DOI: 10.1016/J.Ecolind.2014.06.028 |
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| 2013 |
Willsey AJ, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell. 155: 997-1007. PMID 24267886 DOI: 10.1016/J.Cell.2013.10.020 |
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| 2013 |
Miller JA, Nathanson J, Franjic D, Shim S, Dalley RA, Shapouri S, Smith KA, Sunkin SM, Bernard A, Bennett JL, Lee CK, Hawrylycz MJ, Jones AR, Amaral DG, Å estan N, et al. Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development (Cambridge, England). 140: 4633-44. PMID 24154525 DOI: 10.1242/Dev.097212 |
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| 2013 |
Sanz E, Evanoff R, Quintana A, Evans E, Miller JA, Ko C, Amieux PS, Griswold MD, McKnight GS. RiboTag analysis of actively translated mRNAs in Sertoli and Leydig cells in vivo. Plos One. 8: e66179. PMID 23776628 DOI: 10.1371/Journal.Pone.0066179 |
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| 2013 |
Miller JA, Woltjer RL, Goodenbour JM, Horvath S, Geschwind DH. Genes and pathways underlying regional and cell type changes in Alzheimer's disease. Genome Medicine. 5: 48. PMID 23705665 DOI: 10.1186/Gm452 |
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| 2013 |
Levine AJ, Miller JA, Shapshak P, Gelman B, Singer EJ, Hinkin CH, Commins D, Morgello S, Grant I, Horvath S. Systems analysis of human brain gene expression: mechanisms for HIV-associated neurocognitive impairment and common pathways with Alzheimer's disease. Bmc Medical Genomics. 6: 4. PMID 23406646 DOI: 10.1186/1755-8794-6-4 |
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| 2012 |
Miller J, Dikow T, Agosti D, Sautter G, Catapano T, Penev L, Zhang ZQ, Pentcheff D, Pyle R, Blum S, Parr C, Freeland C, Garnett T, Ford LS, Muller B, et al. From taxonomic literature to cybertaxonomic content. Bmc Biology. 10: 87. PMID 23114078 DOI: 10.1186/1741-7007-10-87 |
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| 2012 |
Gelman BB, Chen T, Lisinicchia JG, Soukup VM, Carmical JR, Starkey JM, Masliah E, Commins DL, Brandt D, Grant I, Singer EJ, Levine AJ, Miller J, Winkler JM, Fox HS, et al. The National NeuroAIDS Tissue Consortium brain gene array: two types of HIV-associated neurocognitive impairment. Plos One. 7: e46178. PMID 23049970 DOI: 10.1371/Journal.Pone.0046178 |
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| 2012 |
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, et al. An anatomically comprehensive atlas of the adult human brain transcriptome. Nature. 489: 391-9. PMID 22996553 DOI: 10.1038/Nature11405 |
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| 2012 |
Miller JA, Griswold CE, Scharff N, Rezá? M, Sz?ts T, Marhabaie M. The velvet spiders: an atlas of the Eresidae (Arachnida, Araneae). Zookeys. 1-144. PMID 22679386 DOI: 10.3897/Zookeys.195.2342 |
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| 2011 |
Miller JA, Cai C, Langfelder P, Geschwind DH, Kurian SM, Salomon DR, Horvath S. Strategies for aggregating gene expression data: the collapseRows R function. Bmc Bioinformatics. 12: 322. PMID 21816037 DOI: 10.1186/1471-2105-12-322 |
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| 2010 |
Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith VS, Brake I, Ryrcroft S, Scott B, Johnson NF, Morris RA, Sautter G, Chavan V, et al. Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples. Zookeys. 1-16. PMID 21594113 DOI: 10.3897/Zookeys.50.538 |
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| 2010 |
Miller JA, Carmichael A, Ramírez MJ, Spagna JC, Haddad CR, Rezác M, Johannesen J, Král J, Wang XP, Griswold CE. Phylogeny of entelegyne spiders: affinities of the family Penestomidae (NEW RANK), generic phylogeny of Eresidae, and asymmetric rates of change in spinning organ evolution (Araneae, Araneoidea, Entelegynae). Molecular Phylogenetics and Evolution. 55: 786-804. PMID 20206276 DOI: 10.1016/J.Ympev.2010.02.021 |
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| 2009 |
Coddington JA, Agnarsson I, Miller JA, Kuntner M, Hormiga G. Undersampling bias: the null hypothesis for singleton species in tropical arthropod surveys. The Journal of Animal Ecology. 78: 573-84. PMID 19245379 DOI: 10.1111/J.1365-2656.2009.01525.X |
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| 2007 |
Ramírez MJ, Coddington JA, Maddison WP, Midford PE, Prendini L, Miller J, Griswold CE, Hormiga G, Sierwald P, Scharff N, Benjamin SP, Wheeler WC. Linking of digital images to phylogenetic data matrices using a morphological ontology. Systematic Biology. 56: 283-94. PMID 17464883 DOI: 10.1080/10635150701313848 |
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| 2006 |
Simmons MP, Zhang LB, Webb CT, Reeves A, Miller JA. The relative performance of Bayesian and parsimony approaches when sampling characters evolving under homogeneous and heterogeneous sets of parameters Cladistics. 22: 171-185. DOI: 10.1111/J.1096-0031.2006.00098.X |
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| 2005 |
Miller JA. Cave adaptation in the spider genus Anthrobia (Araneae, Linyphiidae, Erigoninae) Zoologica Scripta. 34: 565-592. DOI: 10.1111/J.1463-6409.2005.00206.X |
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| 2003 |
Miller JA. Assessing progress in systematics with continuous jackknife function analysis. Systematic Biology. 52: 55-65. PMID 12554440 DOI: 10.1080/10635150390132731 |
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| 2000 |
Toti DS, Coyle FA, Miller JA. A structured inventory of Appalachian grass bald and heath bald spider assemblages and a test of species richness estimator performance Journal of Arachnology. 28: 329-345. DOI: 10.1636/0161-8202(2000)028[0329:Asioag]2.0.Co;2 |
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